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E

Eugene V. Koonin

national institutes of health

19H-index
35Paper Count
4.4KCitation Count
Published Papers 616
Publication Date
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Large eukaryotic DNA viruses encode ESCRT machinery for membrane remodelling
errNature Microbiology
IF19.4
err2026-08-26
err0
PREAI
errSofia Medvedeva; Ulysse Guyet; Eugene V. Koonin; Tom O. Delmont; Mart Krupovic
errShare
errSave
Diverse bacterial pattern recognition receptors sense the core phage proteome
errNature
IF48.5
err2026-07-29
err0
PREAI
errHyunbin Lee; Sofia Luengo-Woods; Jianxiu Zhang; Kira S. Makarova; Yuri I. Wolf; Collin Chiu; Simone A. Evans; Junyi Chen; Haopeng Xiao; Liang Feng; Eugene V. Koonin; Alex Gao
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errSave
Immune safeguarding as a conserved principle of antiviral defence
errNature Reviews Microbiology
IF103.3
err2026-07-17
err0
PREAI
errDavid Mayo-Muñoz; Eugene V. Koonin; Rafael Pinilla-Redondo; Leise Riber
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errSave
END nucleases are antiphage defence systems targeting multiple phages with modified genomes
errNature Microbiology
IF19.4
err2026-06-26
err0
PREAI
errWearn-Xin Yee; Yan-Jiun Lee; Kira S. Makarova; Timothy A. Klein; Alex Wirganowicz; Andres E. Gabagat; Miaoxi Liu; Bálint Csörgő; Eugene V. Koonin; Peter R. Weigele; Joseph Bondy-Denomy
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errSave
Beyond oncogenesis: the unexplored benefits of viruses in cancer immunity
errNature Reviews Cancer
IF66.8
err2026-06-18
err0
PREAI
errXin Wei Wang; Chi-Ping Day; Eugene V. Koonin
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errSave
YprA-family helicases provide the missing link between diverse prokaryotic immune systems
errCell Host & Microbe
IF18.7
err2026-06-11
err0
errOAAI
errRyan T. Bell; Thomas Gaudin; Yi Wu; Sofya K. Garushyants; Harutyun Sahakyan; Kira S. Makarova; Yuri I. Wolf; Simon A. Jackson; Franklin L. Nobrega; Chase L. Beisel; Eugene V. Koonin
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errSave
Frequent occurrence and predicted functions of tRNAs with 4-base-pair anticodon stems in bacteria: extended superwobble hypothesis
errNucleic Acids Research
IF13.1
err2026-04-20
err0
errOAAI
errFadel Fakih; Satish Nandipati; Ambar Kachale; Jiří Heller; Jakub Žváček; Filip Brázdovič; Nawal Al-Chamy; Pragya Tripathi; Zdeněk Paris; Leoš Shivaya Valášek; Michal H Kolář; Vyacheslav Yurchenko; Marek Eliáš; Eugene V Koonin; Julius Lukeš; Anzhelika Butenko; null
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errSave
Identification of hot spring Obelisk-like RNA replicons and expanded diversity of the Obelisk superfamily
errNature Communications
IF15.7
err2026-04-01
err0
PREAI
errUrayama, Syun-ichi; Fukudome, Akihito; Mutz, Pascal; Matsushita, Yosuke; Takaki, Yoshihiro; Nishimura, Yosuke; Medvedeva, Sofia; Krupovic, Mart; Koonin, Eugene V.; Nunoura, Takuro
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errSave
Animal-associated jumbo phages as widespread and active modulators of gut microbiome ecology and metabolism
errScience Advances
IF12.5
err2026-02-06
err0
errOAAI
errLinXing Chen; Antonio Pedro Camargo; Yiting Qin; Eugene V. Koonin; Haoyu Wang; Yuanqiang Zou; Yi Duan; Hao Li
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errSave
The paradox of immune systems conservation between prokaryotes and eukaryotes
errNature Reviews Microbiology
IF103.3
err2026-02-05
err0
PREAI
errEugene V. Koonin; Aude Bernheim
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errSave
Structural visualization of the molecular evolution of CRISPR–Cas9
errNature Structural & Molecular Biology
IF10.1
err2026-01-30
err0
PREAI
errNaoto Nagahata; Kazuki Kato; Sota Yamada; Soumya Kannan; Sae Okazaki; Yukari Isayama; Masahiro Hiraizumi; Keitaro Yamashita; Eugene V. Koonin; Feng Zhang; Hiroshi Nishimasu
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errSave
Dominant contribution of Asgard archaea to eukaryogenesis
errNature
IF48.5
err2026-01-14
err0
errOAAI
errVictor Tobiasson; Jacob Luo; Yuri I. Wolf; Eugene V. Koonin
errShare
errSave
Ecological determinants of altruism in prokaryote antivirus defense
errBiology Direct
IF4.9
err2025-12-20
err0
errOAAI
errDmitry A. Biba; Kira S. Makarova; Yuri I. Wolf; Levi Waldron; Eugene V. Koonin; Nash D. Rochman
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errSave
De novo origin of numerous microproteins in enterobacteria
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-11
err0
errOAAI
errFesenko, Igor; Shabalina, Svetlana A.; Storz, Gisela; Koonin, Eugene, V
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errSave
Spatial-temporal genome analysis and its application for the prediction of functional systems in bacteria and archaea
errmBio
IF4.7
err2025-12-01
err0
PREAI
errKaramycheva, Svetlana; Wolf, Yuri I.; Koonin, Eugene V.; Makarova, Kira S.
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errSave
Widespread and intron-rich mirusviruses are predicted to reproduce in nuclei of unicellular eukaryotes
errNature Microbiology
IF19.4
err2025-11-28
err0
errOAAI
errSofia Medvedeva; Ulysse Guyet; Eric Pelletier; Hans-Joachim Ruscheweyh; Shinichi Sunagawa; Hiroyuki Ogata; Frank O. Aylward; Morgan Gaïa; Natalya Yutin; Eugene V. Koonin; Mart Krupovic; Tom O. Delmont
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errSave
KlebPhaCol: a community-driven resource for Klebsiella research identified a novel phage family
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-26
err0
PREAI
errRothschild-Rodriguez, Daniela; Lambon, Kai S.; Kushwaha, Simran Krishnakant; Garushyants, Sofya K.; Ertelt, Moritz; Latka, Agnieszka; Costa, Ana Rita; Mantzouratou, Anna; King, Claire; Boeckaerts, Dimitri; Sheridan, Elizabeth; Koonin, Eugene, V; Merrick, Francesca; Drobniewski, Francis; De angelis, Ilaria; Saeed, Kordo; Martin, Macy; Sutton, J. Mark; Wand, Matthew E.; Andrew, Michael; Hedges, Morgen; Brouns, Stan J. J.; Haas, Pieter-Jan; Lawson, Sophie T.; Fordham, Stephen M. E.; Lee, Yan-Jiun; Wu, Yi; Briers, Yves; Braun, Peter; Weigele, Peter R.; Nobrega, Franklin L.
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An updated evolutionary classification of CRISPR–Cas systems including rare variants
errNature Microbiology
IF19.4
err2025-11-06
err0
errOAAI
errKira S. Makarova; Sergey A. Shmakov; Yuri I. Wolf; Pascal Mutz; Han Altae-Tran; Chase L. Beisel; Stan J. J. Brouns; Emmanuelle Charpentier; David Cheng; Jennifer Doudna; Daniel H. Haft; Philippe Horvath; Sylvain Moineau; Francisco J. M. Mojica; Patrick Pausch; Rafael Pinilla-Redondo; Shiraz A. Shah; Virginijus Siksnys; Michael P. Terns; Jesse Tordoff; Česlovas Venclovas; Malcolm F. White; Alexander F. Yakunin; Feng Zhang; Roger A. Garrett; Rolf Backofen; John van der Oost; Rodolphe Barrangou; Eugene V. Koonin
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errSave
Evolution of antivirus defense in prokaryotes, depending on the environmental virus prevalence and virome dynamics
errMBIO
IF4.7
err2025-09-01
err0
errOAAI
errBabajanyan, Sanasar G.; Garushyants, Sofya K.; Wolf, Yuri I.; Koonin, Eugene V.
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errSave
Anti-restriction functions of injected phage proteins revealed by peeling back layers of bacterial immunity
errNature Communications
IF15.7
err2025-08-22
err0
errOAAI
errSukrit Silas; Héloïse Carion; Kira S. Makarova; David Sanchez Godinez; Surabhi Haniyur; Lucy Volino; Wearn-Xin Yee; Andrea Fossati; Danielle Swaney; Michael Bocek; Eugene V. Koonin; Joseph Bondy-Denomy
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Research Directions

No research directions
Co-authors
Cooperation Journals
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H-index: 233 · Papers: 948
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B
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