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Sven Dorkenwald
Allen Institute for Brain Science
32H-index
88Paper Count
4.6KCitation Count
Published Papers 20
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Distributed control circuits across a brain-and-cord connectome.png)
Nature.png)
2026-06-08
0
Alexander S. Bates; Jasper S. Phelps; Minsu Kim; Helen H. Yang; Arie Matsliah; Zaki Ajabi; Eric Perlman; Kevin M. Delgado; Mohammed Abdal Monium Osman; Christopher K. Salmon; Jay Gager; Benjamin Silverman; Sophia Renauld; Farzaan Salman; Janki Patel; Matthew F. Collie; Jingxuan Fan; Diego A. Pacheco; Yunzhi Zhao; Wenyi Zhang; Laia Serratosa Capdevila; Ruairí J. V. Roberts; Eva J. Munnelly; Nina Griggs; Helen Langley; Borja Moya-Llamas; Zuoyu Zhang; Ryan T. Maloney; Szi-chieh Yu; Amy R. Sterling; Marissa Sorek; Krzysztof Kruk; Nikitas Serafetinidis; Serene Dhawan; Finja Klemm; Paul Brooks; Ellen Lesser; Jessica M. Jones; Sara E. Pierce-Lundgren; Su-Yee Lee; Yichen Luo; Andrew P. Cook; Theresa H. McKim; Dimitrios Stasi Giakoumas; Benjamin Gorko; Justin Ellis-Joyce; Jiayi Zhang; Emily C. Kophs; Tjalda Falt; Alexa M. Negron-Morales; Austin Burke; James Hebditch; Kyle P. Willie; Ryan Willie; Sergiy Popovych; Nico Kemnitz; Dodam Ih; Kisuk Lee; Ran Lu; Akhilesh Halageri; J. Alexander Bae; Ben Jourdan; Gregory Schwartzman; Damian D. Demarest; Emily Behnke; Doug Bland; Anne Kristiansen; Jaime Skelton; Tom Stocks; Dustin Garner; Anthony Hernandez; Sandeep Kumar; Kevin C. Daly; Sven Dorkenwald; Forrest Collman; Marie P. Suver; Lisa M. Fenk; Michael J. Pankratz; Zepeng Yao; Fei Wang; Stephen J. Huston; Tomke Stürner; Gregory S. X. E. Jefferis; Katharina Eichler; Andrew M. Seeds; Stefanie Hampel; Sweta Agrawal; Tatsuo S. Okubo; Meet Zandawala; Thomas Macrina; Diane-Yayra Adjavon; Jan Funke; John C. Tuthill; Anthony Azevedo; H. Sebastian Seung; Benjamin L. de Bivort; Mala Murthy; Jan Drugowitsch; Rachel I. Wilson; Wei-Chung Allen Lee
NatureIF48.5
2026-06-080PREAI
Alexander S. Bates; Jasper S. Phelps; Minsu Kim; Helen H. Yang; Arie Matsliah; Zaki Ajabi; Eric Perlman; Kevin M. Delgado; Mohammed Abdal Monium Osman; Christopher K. Salmon; Jay Gager; Benjamin Silverman; Sophia Renauld; Farzaan Salman; Janki Patel; Matthew F. Collie; Jingxuan Fan; Diego A. Pacheco; Yunzhi Zhao; Wenyi Zhang; Laia Serratosa Capdevila; Ruairí J. V. Roberts; Eva J. Munnelly; Nina Griggs; Helen Langley; Borja Moya-Llamas; Zuoyu Zhang; Ryan T. Maloney; Szi-chieh Yu; Amy R. Sterling; Marissa Sorek; Krzysztof Kruk; Nikitas Serafetinidis; Serene Dhawan; Finja Klemm; Paul Brooks; Ellen Lesser; Jessica M. Jones; Sara E. Pierce-Lundgren; Su-Yee Lee; Yichen Luo; Andrew P. Cook; Theresa H. McKim; Dimitrios Stasi Giakoumas; Benjamin Gorko; Justin Ellis-Joyce; Jiayi Zhang; Emily C. Kophs; Tjalda Falt; Alexa M. Negron-Morales; Austin Burke; James Hebditch; Kyle P. Willie; Ryan Willie; Sergiy Popovych; Nico Kemnitz; Dodam Ih; Kisuk Lee; Ran Lu; Akhilesh Halageri; J. Alexander Bae; Ben Jourdan; Gregory Schwartzman; Damian D. Demarest; Emily Behnke; Doug Bland; Anne Kristiansen; Jaime Skelton; Tom Stocks; Dustin Garner; Anthony Hernandez; Sandeep Kumar; Kevin C. Daly; Sven Dorkenwald; Forrest Collman; Marie P. Suver; Lisa M. Fenk; Michael J. Pankratz; Zepeng Yao; Fei Wang; Stephen J. Huston; Tomke Stürner; Gregory S. X. E. Jefferis; Katharina Eichler; Andrew M. Seeds; Stefanie Hampel; Sweta Agrawal; Tatsuo S. Okubo; Meet Zandawala; Thomas Macrina; Diane-Yayra Adjavon; Jan Funke; John C. Tuthill; Anthony Azevedo; H. Sebastian Seung; Benjamin L. de Bivort; Mala Murthy; Jan Drugowitsch; Rachel I. Wilson; Wei-Chung Allen Lee.png){kind=icon}
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SaveThe synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex2025-07-280
OAAIAgnes L. Bodor; Casey M. Schneider-Mizell; Chi Zhang; Leila Elabbady; Alex Mallen; Andi Bergeson; Derrick Brittain; JoAnn Buchanan; Daniel J. Bumbarger; Rachel Dalley; Clare Gamlin; Emily Joyce; Daniel Kapner; Sam Kinn; Gayathri Mahalingam; Sharmishtaa Seshamani; Shelby Suckow; Marc Takeno; Russel Torres; Wenjing Yin; J. Alexander Bae; Manuel A. Castro; Sven Dorkenwald; Akhilesh Halageri; Zhen Jia; Chris Jordan; Nico Kemnitz; Kisuk Lee; Kai Li; Ran Lu; Thomas Macrina; Eric Mitchell; Shanka Subhra Mondal; Shang Mu; Barak Nehoran; Sergiy Popovych; William Silversmith; Nicholas L. Turner; Szi-chieh Yu; William Wong; Jingpeng Wu; Brendan Celii; Luke Campagnola; Stephanie C. Seeman; Tim Jarsky; Naixin Ren; Anton Arkhipov; Jacob Reimer; H. Sebastian Seung; R. Clay Reid; Forrest Collman; Nuno Maçarico da Costa
2025-07-280OAAIAgnes L. Bodor; Casey M. Schneider-Mizell; Chi Zhang; Leila Elabbady; Alex Mallen; Andi Bergeson; Derrick Brittain; JoAnn Buchanan; Daniel J. Bumbarger; Rachel Dalley; Clare Gamlin; Emily Joyce; Daniel Kapner; Sam Kinn; Gayathri Mahalingam; Sharmishtaa Seshamani; Shelby Suckow; Marc Takeno; Russel Torres; Wenjing Yin; J. Alexander Bae; Manuel A. Castro; Sven Dorkenwald; Akhilesh Halageri; Zhen Jia; Chris Jordan; Nico Kemnitz; Kisuk Lee; Kai Li; Ran Lu; Thomas Macrina; Eric Mitchell; Shanka Subhra Mondal; Shang Mu; Barak Nehoran; Sergiy Popovych; William Silversmith; Nicholas L. Turner; Szi-chieh Yu; William Wong; Jingpeng Wu; Brendan Celii; Luke Campagnola; Stephanie C. Seeman; Tim Jarsky; Naixin Ren; Anton Arkhipov; Jacob Reimer; H. Sebastian Seung; R. Clay Reid; Forrest Collman; Nuno Maçarico da CostaShareSaveInhibitory specificity from a connectomic census of mouse visual cortex (vol 640, pg 448, 2025)NATURE2025-05-190OAAISchneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico
NATUREIF48.5
2025-05-190OAAISchneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno MacaricoShareSaveComparative connectomics of Drosophila descending and ascending neuronsNATURE2025-04-300OAAISturner, Tomke; Brooks, Paul; Serratosa Capdevila, Laia; Morris, Billy J.; Javier, Alexandre; Fang, Siqi; Gkantia, Marina; Cachero, Sebastian; Beckett, Isabella R.; Marin, Elizabeth C.; Schlegel, Philipp; Champion, Andrew S.; Moitra, Ilina; Richards, Alana; Klemm, Finja; Kugel, Leonie; Namiki, Shigehiro; Cheong, Han S. J.; Kovalyak, Julie; Tenshaw, Emily; Parekh, Ruchi; Phelps, Jasper S.; Mark, Brandon; Dorkenwald, Sven; Bates, Alexander S.; Matsliah, Arie; Yu, Szi-chieh; Mckellar, Claire E.; Sterling, Amy; Seung, H. Sebastian; Murthy, Mala; Tuthill, John C.; Lee, Wei-Chung Allen; Card, Gwyneth M.; Costa, Marta; Jefferis, Gregory S. X. E.; Eichler, Katharina
NATUREIF48.5
2025-04-300OAAISturner, Tomke; Brooks, Paul; Serratosa Capdevila, Laia; Morris, Billy J.; Javier, Alexandre; Fang, Siqi; Gkantia, Marina; Cachero, Sebastian; Beckett, Isabella R.; Marin, Elizabeth C.; Schlegel, Philipp; Champion, Andrew S.; Moitra, Ilina; Richards, Alana; Klemm, Finja; Kugel, Leonie; Namiki, Shigehiro; Cheong, Han S. J.; Kovalyak, Julie; Tenshaw, Emily; Parekh, Ruchi; Phelps, Jasper S.; Mark, Brandon; Dorkenwald, Sven; Bates, Alexander S.; Matsliah, Arie; Yu, Szi-chieh; Mckellar, Claire E.; Sterling, Amy; Seung, H. Sebastian; Murthy, Mala; Tuthill, John C.; Lee, Wei-Chung Allen; Card, Gwyneth M.; Costa, Marta; Jefferis, Gregory S. X. E.; Eichler, KatharinaShareSavePerisomatic ultrastructure efficiently classifies cells in mouse cortexNATURE2025-04-097OAAIElabbady, Leila; Seshamani, Sharmishtaa; Mu, Shang; Mahalingam, Gayathri; Schneider-Mizell, Casey M.; Bodor, Agnes L.; Bae, J. Alexander; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Dorkenwald, Sven; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Seung, H. Sebastian; Reid, R. Clay; da Costa, Nuno Macarico
NATUREIF48.5
2025-04-097OAAIElabbady, Leila; Seshamani, Sharmishtaa; Mu, Shang; Mahalingam, Gayathri; Schneider-Mizell, Casey M.; Bodor, Agnes L.; Bae, J. Alexander; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Dorkenwald, Sven; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Seung, H. Sebastian; Reid, R. Clay; da Costa, Nuno MacaricoShareSaveConnectomics of predicted Sst transcriptomic types in mouse visual cortexNATURE2025-04-095OAAIGamlin, Clare R.; Schneider-Mizell, Casey M.; Mallory, Matthew; Elabbady, Leila; Gouwens, Nathan; Williams, Grace; Mukora, Alice; Dalley, Rachel; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Joyce, Emily; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Takeno, Marc; Torres, Russel; Yin, Wenjing; Nicovich, Philip R.; Bae, J. Alexander; Castro, Manuel A.; Dorkenwald, Sven; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Berg, Jim; Jarsky, Tim; Lee, Brian; Seung, H. Sebastian; Zeng, Hongkui; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico
NATUREIF48.5
2025-04-095OAAIGamlin, Clare R.; Schneider-Mizell, Casey M.; Mallory, Matthew; Elabbady, Leila; Gouwens, Nathan; Williams, Grace; Mukora, Alice; Dalley, Rachel; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Joyce, Emily; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Takeno, Marc; Torres, Russel; Yin, Wenjing; Nicovich, Philip R.; Bae, J. Alexander; Castro, Manuel A.; Dorkenwald, Sven; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Berg, Jim; Jarsky, Tim; Lee, Brian; Seung, H. Sebastian; Zeng, Hongkui; Reid, R. Clay; Collman, Forrest; da Costa, Nuno MacaricoShareSaveFunctional connectomics reveals general wiring rule in mouse visual cortexNATURE2025-04-094OAAIDing, Zhuokun; Fahey, Paul G.; Papadopoulos, Stelios; Wang, Eric Y.; Celii, Brendan; Papadopoulos, Christos; Chang, Andersen; Kunin, Alexander B.; Tran, Dat; Fu, Jiakun; Ding, Zhiwei; Patel, Saumil; Ntanavara, Lydia; Froebe, Rachel; Ponder, Kayla; Muhammad, Taliah; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Yatsenko, Dimitri; Froudarakis, Emmanouil; Sinz, Fabian; Josic, Kresimir; Rosenbaum, Robert; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Walker, Edgar Y.; Pitkow, Xaq; Reimer, Jacob
NATUREIF48.5
2025-04-094OAAIDing, Zhuokun; Fahey, Paul G.; Papadopoulos, Stelios; Wang, Eric Y.; Celii, Brendan; Papadopoulos, Christos; Chang, Andersen; Kunin, Alexander B.; Tran, Dat; Fu, Jiakun; Ding, Zhiwei; Patel, Saumil; Ntanavara, Lydia; Froebe, Rachel; Ponder, Kayla; Muhammad, Taliah; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Yatsenko, Dimitri; Froudarakis, Emmanouil; Sinz, Fabian; Josic, Kresimir; Rosenbaum, Robert; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Walker, Edgar Y.; Pitkow, Xaq; Reimer, JacobShareSaveNEURD offers automated proofreading and feature extraction for connectomicsNATURE2025-04-095OAAICelii, Brendan; Papadopoulos, Stelios; Ding, Zhuokun; Fahey, Paul G.; Wang, Eric; Papadopoulos, Christos; Kunin, Alexander B.; Patel, Saumil; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Yin, Wenjing; Xenes, Daniel; Kitchell, Lindsey M.; Rivlin, Patricia K.; Rose, Victoria A.; Bishop, Caitlyn A.; Wester, Brock; Froudarakis, Emmanouil; Walker, Edgar Y.; Sinz, Fabian; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Pitkow, Xaq; Tolias, Andreas S.; Reimer, Jacob
NATUREIF48.5
2025-04-095OAAICelii, Brendan; Papadopoulos, Stelios; Ding, Zhuokun; Fahey, Paul G.; Wang, Eric; Papadopoulos, Christos; Kunin, Alexander B.; Patel, Saumil; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Yin, Wenjing; Xenes, Daniel; Kitchell, Lindsey M.; Rivlin, Patricia K.; Rose, Victoria A.; Bishop, Caitlyn A.; Wester, Brock; Froudarakis, Emmanouil; Walker, Edgar Y.; Sinz, Fabian; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Pitkow, Xaq; Tolias, Andreas S.; Reimer, JacobShareSaveAn unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortexNATURE COMMUNICATIONS2025-04-090OAAIWeis, Marissa A.; Papadopoulos, Stelios; Hansel, Laura; Lueddecke, Timo; Celii, Brendan; Fahey, Paul G.; Wang, Eric Y.; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Castro, Manuel A.; Collman, Forrest; da Costa, Nuno Macarico; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Reid, R. Clay; Schneider-Mizell, Casey M.; Seung, H. Sebastian; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reimer, Jacob; Berens, Philipp; Tolias, Andreas S.
NATURE COMMUNICATIONSIF15.7
2025-04-090OAAIWeis, Marissa A.; Papadopoulos, Stelios; Hansel, Laura; Lueddecke, Timo; Celii, Brendan; Fahey, Paul G.; Wang, Eric Y.; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Castro, Manuel A.; Collman, Forrest; da Costa, Nuno Macarico; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Reid, R. Clay; Schneider-Mizell, Casey M.; Seung, H. Sebastian; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reimer, Jacob; Berens, Philipp; Tolias, Andreas S.ShareSaveCAVE: Connectome Annotation Versioning EngineNATURE METHODS2025-04-092OAAIDorkenwald, Sven; Schneider-Mizell, Casey M.; Brittain, Derrick; Halageri, Akhilesh; Jordan, Chris; Kemnitz, Nico; Castro, Manual A.; Silversmith, William; Maitin-Shephard, Jeremy; Troidl, Jakob; Pfister, Hanspeter; Gillet, Valentin; Xenes, Daniel; Bae, J. Alexander; Bodor, Agnes L.; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Jia, Zhen; Kapner, Daniel; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reid, R. Clay; da Costa, Nuno Macarico; Seung, H. Sebastian
NATURE METHODSIF32.1
2025-04-092OAAIDorkenwald, Sven; Schneider-Mizell, Casey M.; Brittain, Derrick; Halageri, Akhilesh; Jordan, Chris; Kemnitz, Nico; Castro, Manual A.; Silversmith, William; Maitin-Shephard, Jeremy; Troidl, Jakob; Pfister, Hanspeter; Gillet, Valentin; Xenes, Daniel; Bae, J. Alexander; Bodor, Agnes L.; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Jia, Zhen; Kapner, Daniel; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reid, R. Clay; da Costa, Nuno Macarico; Seung, H. SebastianShareSaveInhibitory specificity from a connectomic census of mouse visual cortexNATURE2025-04-096OAAISchneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico
NATUREIF48.5
2025-04-096OAAISchneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno MacaricoShareSaveMulti-layered maps of neuropil with segmentation-guided contrastive learningNATURE METHODS2023-11-207
OAAIDorkenwald, Sven; Li, Peter H.; Januszewski, Michal; Berger, Daniel R.; Maitin-Shepard, Jeremy; Bodor, Agnes L.; Collman, Forrest; Schneider-Mizell, Casey M.; da Costa, Nuno Macarico; Lichtman, Jeff W.; Jain, Viren
NATURE METHODSIF32.1
2023-11-207OAAIDorkenwald, Sven; Li, Peter H.; Januszewski, Michal; Berger, Daniel R.; Maitin-Shepard, Jeremy; Bodor, Agnes L.; Collman, Forrest; Schneider-Mizell, Casey M.; da Costa, Nuno Macarico; Lichtman, Jeff W.; Jain, VirenShareSaveOligodendrocyte precursor cells ingest axons in the mouse neocortex2022-11-2365OAAIBuchanan, JoAnn; Elabbady, Leila; Collman, Forrest; Jorstad, Nikolas L.; Bakken, Trygve E.; Ott, Carolyn; Glatzer, Jenna; Bleckert, Adam A.; Bodor, Agnes L.; Brittain, Derrick; Bumbarger, Daniel J.; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Schneider-Mizell, Casey; Takeno, Marc M.; Torres, Russel; Yin, Wenjing; Hodge, Rebecca D.; Castro, Manuel; Dorkenwald, Sven; Ih, Dodam; Jordan, Chris S.; Kemnitz, Nico; Lee, Kisuk; Lu, Ran; Macrina, Thomas; Mu, Shang; Popovych, Sergiy; Silversmith, William M.; Tartavull, Ignacio; Turner, Nicholas L.; Wilson, Alyssa M.; Wong, William; Wu, Jingpeng; Zlateski, Aleksandar; Zung, Jonathan; Lippincott-Schwartz, Jennifer; Lein, Ed S.; Seung, H. Sebastian; Bergles, Dwight E.; Reid, R. Clay; da Costa, Nuno Macarico
2022-11-2365OAAIBuchanan, JoAnn; Elabbady, Leila; Collman, Forrest; Jorstad, Nikolas L.; Bakken, Trygve E.; Ott, Carolyn; Glatzer, Jenna; Bleckert, Adam A.; Bodor, Agnes L.; Brittain, Derrick; Bumbarger, Daniel J.; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Schneider-Mizell, Casey; Takeno, Marc M.; Torres, Russel; Yin, Wenjing; Hodge, Rebecca D.; Castro, Manuel; Dorkenwald, Sven; Ih, Dodam; Jordan, Chris S.; Kemnitz, Nico; Lee, Kisuk; Lu, Ran; Macrina, Thomas; Mu, Shang; Popovych, Sergiy; Silversmith, William M.; Tartavull, Ignacio; Turner, Nicholas L.; Wilson, Alyssa M.; Wong, William; Wu, Jingpeng; Zlateski, Aleksandar; Zung, Jonathan; Lippincott-Schwartz, Jennifer; Lein, Ed S.; Seung, H. Sebastian; Bergles, Dwight E.; Reid, R. Clay; da Costa, Nuno MacaricoShareSaveBinary and analog variation of synapses between cortical pyramidal neuronsELIFE2022-11-1624OAAIDorkenwald, Sven; Turner, Nicholas L.; Macrina, Thomas; Lee, Kisuk; Lu, Ran; Wu, Jingpeng; Bodor, Agnes L.; Bleckert, Adam A.; Brittain, Derrick; Kemnitz, Nico; Silversmith, William M.; Ih, Dodam; Zung, Jonathan; Zlateski, Aleksandar; Tartavull, Ignacio; Yu, Szi-Chieh; Popovych, Sergiy; Wong, William; Castro, Manuel; Jordan, Chris S.; Wilson, Alyssa M.; Froudarakis, Emmanouil; Buchanan, JoAnn; Takeno, Marc M.; Torres, Russel; Mahalingam, Gayathri; Collman, Forrest; Schneider-Mizell, Casey M.; Bumbarger, Daniel J.; Li, Yang; Becker, Lynne; Suckow, Shelby; Reimer, Jacob; Tolias, Andreas S.; Macarico da Costa, Nuno; Reid, R. Clay; Seung, H. Sebastian
ELIFEIF0
2022-11-1624OAAIDorkenwald, Sven; Turner, Nicholas L.; Macrina, Thomas; Lee, Kisuk; Lu, Ran; Wu, Jingpeng; Bodor, Agnes L.; Bleckert, Adam A.; Brittain, Derrick; Kemnitz, Nico; Silversmith, William M.; Ih, Dodam; Zung, Jonathan; Zlateski, Aleksandar; Tartavull, Ignacio; Yu, Szi-Chieh; Popovych, Sergiy; Wong, William; Castro, Manuel; Jordan, Chris S.; Wilson, Alyssa M.; Froudarakis, Emmanouil; Buchanan, JoAnn; Takeno, Marc M.; Torres, Russel; Mahalingam, Gayathri; Collman, Forrest; Schneider-Mizell, Casey M.; Bumbarger, Daniel J.; Li, Yang; Becker, Lynne; Suckow, Shelby; Reimer, Jacob; Tolias, Andreas S.; Macarico da Costa, Nuno; Reid, R. Clay; Seung, H. SebastianShareSaveSyConn2: dense synaptic connectivity inference for volume electron microscopyNATURE METHODS2022-10-248OAAISchubert, Philipp J.; Dorkenwald, Sven; Januszewski, Michal; Klimesch, Jonathan; Svara, Fabian; Mancu, Andrei; Ahmad, Hashir; Fee, Michale S.; Jain, Viren; Kornfeld, Joergen
NATURE METHODSIF32.1
2022-10-248OAAISchubert, Philipp J.; Dorkenwald, Sven; Januszewski, Michal; Klimesch, Jonathan; Svara, Fabian; Mancu, Andrei; Ahmad, Hashir; Fee, Michale S.; Jain, Viren; Kornfeld, JoergenShareSaveNeural network organization for courtship-song feature detection in DrosophilaCURRENT BIOLOGY2022-08-0116OAAIBaker, Christa A.; McKellar, Claire; Pang, Rich; Nern, Aljoscha; Dorkenwald, Sven; Pacheco, Diego A.; Eckstein, Nils; Funke, Jan; Dickson, Barry J.; Murthy, Mala
CURRENT BIOLOGYIF7.5
2022-08-0116OAAIBaker, Christa A.; McKellar, Claire; Pang, Rich; Nern, Aljoscha; Dorkenwald, Sven; Pacheco, Diego A.; Eckstein, Nils; Funke, Jan; Dickson, Barry J.; Murthy, MalaShareSaveFlyWire: online community for whole-brain connectomicsNATURE METHODS2021-12-2392OAAIDorkenwald, Sven; McKellar, Claire E.; Macrina, Thomas; Kemnitz, Nico; Lee, Kisuk; Lu, Ran; Wu, Jingpeng; Popovych, Sergiy; Mitchell, Eric; Nehoran, Barak; Jia, Zhen; Bae, J. Alexander; Mu, Shang; Ih, Dodam; Castro, Manuel; Ogedengbe, Oluwaseun; Halageri, Akhilesh; Kuehner, Kai; Sterling, Amy R.; Ashwood, Zoe; Zung, Jonathan; Brittain, Derrick; Collman, Forrest; Schneider-Mizell, Casey; Jordan, Chris; Silversmith, William; Baker, Christa; Deutsch, David; Encarnacion-Rivera, Lucas; Kumar, Sandeep; Burke, Austin; Bland, Doug; Gager, Jay; Hebditch, James; Koolman, Selden; Moore, Merlin; Morejohn, Sarah; Silverman, Ben; Willie, Kyle; Willie, Ryan; Yu, Szi-chieh; Murthy, Mala; Seung, H. Sebastian
NATURE METHODSIF32.1
2021-12-2392OAAIDorkenwald, Sven; McKellar, Claire E.; Macrina, Thomas; Kemnitz, Nico; Lee, Kisuk; Lu, Ran; Wu, Jingpeng; Popovych, Sergiy; Mitchell, Eric; Nehoran, Barak; Jia, Zhen; Bae, J. Alexander; Mu, Shang; Ih, Dodam; Castro, Manuel; Ogedengbe, Oluwaseun; Halageri, Akhilesh; Kuehner, Kai; Sterling, Amy R.; Ashwood, Zoe; Zung, Jonathan; Brittain, Derrick; Collman, Forrest; Schneider-Mizell, Casey; Jordan, Chris; Silversmith, William; Baker, Christa; Deutsch, David; Encarnacion-Rivera, Lucas; Kumar, Sandeep; Burke, Austin; Bland, Doug; Gager, Jay; Hebditch, James; Koolman, Selden; Moore, Merlin; Morejohn, Sarah; Silverman, Ben; Willie, Kyle; Willie, Ryan; Yu, Szi-chieh; Murthy, Mala; Seung, H. SebastianShareSaveThe neural basis for a persistent internal state in Drosophila femalesELIFE2020-11-2353OAAIDeutsch, David; Pacheco, Diego; Encarnacion-Rivera, Lucas; Pereira, Talmo; Fathy, Ramie; Clemens, Jan; Girardin, Cyrille; Calhoun, Adam; Ireland, Elise; Burke, Austin; Dorkenwald, Sven; McKellar, Claire; Macrina, Thomas; Lu, Ran; Lee, Kisuk; Kemnitz, Nico; Ih, Dodham; Castro, Manuel; Halageri, Akhilesh; Jordan, Chris; Silversmith, William; Wu, Jingpeng; Seung, H. Sebastian; Murthy, Mala
ELIFEIF0
2020-11-2353OAAIDeutsch, David; Pacheco, Diego; Encarnacion-Rivera, Lucas; Pereira, Talmo; Fathy, Ramie; Clemens, Jan; Girardin, Cyrille; Calhoun, Adam; Ireland, Elise; Burke, Austin; Dorkenwald, Sven; McKellar, Claire; Macrina, Thomas; Lu, Ran; Lee, Kisuk; Kemnitz, Nico; Ih, Dodham; Castro, Manuel; Halageri, Akhilesh; Jordan, Chris; Silversmith, William; Wu, Jingpeng; Seung, H. Sebastian; Murthy, MalaShareSaveLearning cellular morphology with neural networksNATURE COMMUNICATIONS2019-06-2152OAAISchubert, Philipp J.; Dorkenwald, Sven; Januszewski, Michal; Jain, Viren; Kornfeld, Joergen
NATURE COMMUNICATIONSIF15.7
2019-06-2152OAAISchubert, Philipp J.; Dorkenwald, Sven; Januszewski, Michal; Jain, Viren; Kornfeld, JoergenShareSaveAutomated synaptic connectivity inference for volume electron microscopyNATURE METHODS2017-02-2792Dorkenwald, Sven; Schubert, Philipp J.; Killinger, Marius F.; Urban, Gregor; Mikula, Shawn; Svara, Fabian; Kornfeld, Joergen
NATURE METHODSIF32.1
2017-02-2792PREAI
Dorkenwald, Sven; Schubert, Philipp J.; Killinger, Marius F.; Urban, Gregor; Mikula, Shawn; Svara, Fabian; Kornfeld, JoergenShareSaveResearch Directions
No research directions