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Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches Niarakis, Anna; Ostaszewski, Marek; Mazein, Alexander; Kuperstein, Inna; Kutmon, Martina; Gillespie, Marc E.; Funahashi, Akira; Acencio, Marcio Luis; Hemedan, Ahmed; Aichem, Michael; Klein, Karsten; Czauderna, Tobias; Burtscher, Felicia; Yamada, Takahiro G.; Hiki, Yusuke; Hiroi, Noriko F.; Hu, Finterly; Pham, Nhung; Ehrhart, Friederike; Willighagen, Egon L.; Valdeolivas, Alberto; Dugourd, Aurelien; Messina, Francesco; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Soliman, Sylvain; Aghamiri, Sara Sadat; Puniya, Bhanwar Lal; Naldi, Aurelien; Helikar, Tomas; Singh, Vidisha; Fernandez, Marco Farinas; Bermudez, Viviam; Tsirvouli, Eirini; Montagud, Arnau; Noel, Vincent; Ponce-de-Leon, Miguel; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Luna, Augustin; Pinero, Janet; Furlong, Laura I.; Balaur, Irina; Rougny, Adrien; Jarosz, Yohan; Overall, Rupert W.; Phair, Robert; Perfetto, Livia; Matthews, Lisa; Rex, Devasahayam Arokia Balaya; Orlic-Milacic, Marija; Gomez, Luis Cristobal Monraz; De Meulder, Bertrand; Ravel, Jean Marie; Jassal, Bijay; Satagopam, Venkata; Wu, Guanming; Golebiewski, Martin; Gawron, Piotr; Calzone, Laurence; Beckmann, Jacques S.; Evelo, Chris T.; D'Eustachio, Peter; Schreiber, Falk; Saez-Rodriguez, Julio; Dopazo, Joaquin; Kuiper, Martin; Valencia, Alfonso; Wolkenhauer, Olaf; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
The Evolution, Assembly, and Dynamics of Marine Holobionts Gonzalez-Pech, Raul A.; Li, Vivian Y.; Garcia, Vanessa; Boville, Elizabeth; Mammone, Marta; Kitano, Hiroaki; Ritchie, Kim B.; Medina, Monica Share Save
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Human immune and gut microbial parameters associated with inter-individual variations in COVID-19 mRNA vaccine-induced immunity Hirota, Masato; Tamai, Miho; Yukawa, Sachie; Taira, Naoyuki; Matthews, Melissa M.; Toma, Takeshi; Seto, Yu; Yoshida, Makiko; Toguchi, Sakura; Miyagi, Mio; Mori, Tomoari; Tomori, Hiroaki; Tamai, Osamu; Kina, Mitsuo; Sakihara, Eishin; Yamashiro, Chiaki; Miyagi, Masatake; Tamaki, Kentaro; Wolf, Matthias; Collins, Mary K.; Kitano, Hiroaki; Ishikawa, Hiroki Share Save
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COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
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Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer's disease Tsuji, Shingo; Hase, Takeshi; Yachie-Kinoshita, Ayako; Nishino, Taiko; Ghosh, Samik; Kikuchi, Masataka; Shimokawa, Kazuro; Aburatani, Hiroyuki; Kitano, Hiroaki; Tanaka, Hiroshi Share Save
LimeMap: a comprehensive map of lipid mediator metabolic pathways (vol 7, 6, 2021) Nishi, Akinori; Ohbuchi, Katsuya; Kaifuchi, Noriko; Shimobori, Chika; Kushida, Hirotaka; Yamamoto, Masahiro; Kita, Yoshihiro; Tokuoka, Suzumi M.; Yachie, Ayako; Matsuoka, Yukiko; Kitano, Hiroaki Share Save
Effects of maoto (ma-huang-tang) on host lipid mediator and transcriptome signature in influenza virus infection Nishi, Akinori; Kaifuchi, Noriko; Shimobori, Chika; Ohbuchi, Katsuya; Iizuka, Seiichi; Sugiyama, Aiko; Ogura, Keisuke; Yamamoto, Masahiro; Kuroki, Haruo; Nabeshima, Shigeki; Yachie, Ayako; Matsuoka, Yukiko; Kitano, Hiroaki Share Save
LimeMap: a comprehensive map of lipid mediator metabolic pathways Nishi, Akinori; Ohbuchi, Katsuya; Kaifuchi, Noriko; Shimobori, Chika; Kushida, Hirotaka; Yamamoto, Masahiro; Kita, Yoshihiro; Tokuoka, Suzumi M.; Yachie, Ayako; Matsuoka, Yukiko; Kitano, Hiroaki Share Save
SBML Level 3: an extensible format for the exchange and reuse of biological models Keating, Sarah M.; Waltemath, Dagmar; Koenig, Matthias; Zhang, Fengkai; Draeger, Andreas; Chaouiya, Claudine; Bergmann, Frank T.; Finney, Andrew; Gillespie, Colin S.; Helikar, Tomas; Hoops, Stefan; Malik-Sheriff, Rahuman S.; Moodie, Stuart L.; Moraru, Ion I.; Myers, Chris J.; Naldi, Aurelien; Olivier, Brett G.; Sahle, Sven; Schaff, James C.; Smith, Lucian P.; Swat, Maciej J.; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J.; Blinov, Michael L.; Begley, Kimberly; Faeder, James R.; Gomez, Harold F.; Hamm, Thomas M.; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L.; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J.; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A.; Shapiro, Bruce E.; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M.; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C.; Hucka, Michael Share Save
A prospective compound screening contest identified broader inhibitors for Sirtuin 1 Chiba, Shuntaro; Ohue, Masahito; Gryniukova, Anastasiia; Borysko, Petro; Zozulya, Sergey; Yasuo, Nobuaki; Yoshino, Ryunosuke; Ikeda, Kazuyoshi; Shin, Woong-Hee; Kihara, Daisuke; Iwadate, Mitsuo; Umeyama, Hideaki; Ichikawa, Takaaki; Teramoto, Reiji; Hsin, Kun-Yi; Gupta, Vipul; Kitano, Hiroaki; Sakamoto, Mika; Higuchi, Akiko; Miura, Nobuaki; Yura, Kei; Mochizuki, Masahiro; Ramakrishnan, Chandrasekaran; Thangakani, A. Mary; Velmurugan, D.; Gromiha, M. Michael; Nakane, Itsuo; Uchida, Nanako; Hakariya, Hayase; Tan, Modong; Nakamura, Hironori K.; Suzuki, Shogo D.; Ito, Tomoki; Kawatani, Masahiro; Kudoh, Kentaroh; Takashina, Sakurako; Yamamoto, Kazuki Z.; Moriwaki, Yoshitaka; Oda, Keita; Kobayashi, Daisuke; Okuno, Tatsuya; Minami, Shintaro; Chikenji, George; Prathipati, Philip; Nagao, Chioko; Mohsen, Attayeb; Ito, Mari; Mizuguchi, Kenji; Honma, Teruki; Ishida, Takashi; Hirokawa, Takatsugu; Akiyama, Yutaka; Sekijima, Masakazu Share Save
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