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Martin Hofmann‐Apitius

department of bioinformatics

62H-index
415Paper Count
1.7WCitation Count
Published Papers 105
Publication Date
Converging pathomechanisms link SARS-CoV-2 infection with major neurodegenerative diseases
err2026-08-10
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errOAAI
errFeng Q. HeFeng; Andrea Martí-Sarrias; Heval Atas Guvenilir; Renata Baptista Vieira de Sá; Adithya Sridhar; Undine Haferkamp; Fatima El Kach-Marso; Sarah Bauermeister; Anett Hudák; Aristeidis Roubanis; Jochen Ohnmacht; Priya Sethumadhavan; Markus Ollert; Martin Hofmann-Apitius; Arcadi Navarro; Alpha Tom Kodamullil; Ole Pless; Tamas Letoha; Sandra Acosta; Rejko Krüger
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Unraveling the co-morbidity between COVID-19 and neurodegenerative diseases through multi-scale graph analysis: A systematic investigation of biological databases and text mining
err2025-12-01
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errOAAI
errBabaiha, Negin Sadat; Geissler, Stefan; Nibart, Vincent; Guevenilir, Heval Atas; Bharadhwaj, Vinay Srinivas; Kodamullil, Alpha Tom; Klein, Juergen; Jacobs, Marc; Hofmann-Apitius, Martin
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Three-layered semantic framework for public health intelligence
err2025-09-15
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errOAAI
errGuru Rao, Sathvik; Rokkam, Pranitha; Zhang, Bide; Sargsyan, Astghik; Kaladharan, Abish; Sethumadhavan, Priya; Jacobs, Marc; Hofmann-Apitius, Martin; Tom Kodamullil, Alpha
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Knowledge graph-driven curation of heme-TLR4 interactions in inflammatory pathways
err2025-08-21
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PREAI
errDhruv C. Rathod; Negin Sadat Babaiha; Elena Kullmann; Martin Hofmann-Apitius; Diana Imhof
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Artificial Intelligence-Supported Development of Health Guideline Questions
err2024-11-01
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PREAI
errSousa-Pinto, Bernardo; Vieira, Rafael Jose; Marques-Cruz, Manuel; Bognanni, Antonio; Gil-Mata, Sara; Jankin, Slava; Amaro, Joana; Pinheiro, Liliane; Mota, Marta; Giovannini, Mattia; de las Vecillas, Leticia; Pereira, Ana Margarida; Litynska, Justyna; Samolinski, Boleslaw; Bernstein, Jonathan; Dykewicz, Mark; Hofmann-Apitius, Martin; Jacobs, Marc; Papadopoulos, Nikolaos; Williams, Sian; Zuberbier, Torsten; Fonseca, Joao A.; Cruz-Correia, Ricardo; Bousquet, Jean; Schuenemann, Holger J.
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Concepts for the Development of Person-Centered, Digitally Enabled, Artificial Intelligence-Assisted ARIA Care Pathways (ARIA 2024)
err2024-10-01
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errOAAI
errBousquet, Jean; Schuenemann, Holger J.; Sousa-Pinto, Bernardo; Zuberbier, Torsten; Togias, Alkis; Samolinski, Boleslaw; Bedbrook, Anna; Czarlewski, Wienczyslawa; Hofmann-Apitius, Martin; Litynska, Justyna; Vieira, Rafael Jose; Anto, Josep M.; Fonseca, Joao A.; Brozek, Jan; Bognanni, Antonio; Brussino, Luisa; Canonica, G. Walter; Cherrez-Ojeda, Ivan; Cruz, Alvaro A.; de las Vecillas, Leticia; Dykewicz, Mark; Gemicioglu, Bilun; Giovannini, Mattia; Haahtela, Tari; Jacobs, Marc; Jacomelli, Cristina; Klimek, Ludger; Kvedariene, Violeta; Larenas-Linnemann, Desiree E.; Louis, Gilles; Lourenco, Olga; Leemann, Lucas; Morais-Almeida, Mario; Neves, Ana Luisa; Nadeau, Kari C.; Nowak, Artur; Palamarchuk, Yuliia; Palkonen, Susanna; Papadopoulos, Nikolaos G.; Parmelli, Elena; Pereira, Ana Margarida; Pfaar, Oliver; Regateiro, Frederico S.; Savoure, Marine; Taborda-Barata, Luis; Toppila-Salmi, Sanna K.; Torres, Maria J.; Valiulis, Arunas; Ventura, Maria Teresa; Williams, Sian; Yepes-Nunez, Juan J.; Yorgancioglu, Arzu; Zhang, Luo; Zuberbier, Jaron; Latiff, Amir Hamzah Abdul; Abdullah, Baharudin; Agache, Ioana; Al-Ahmad, Mona; Al-Nesf, Maryam Ali; Al Shaikh, Nada A.; Amaral, Rita; Ansotegui, Ignacio J.; Asllani, Julijana; Balotro-Torres, Maria Cristina; Bergman, Karl-Christian; Bernstein, Jonathan A.; Bindslev-Jensen, Carsten; Blaiss, Michael S.; Bonaglia, Cristina; Bonini, Matteo; Bosse, Isabelle; Braido, Fulvio; Caballero-Fonseca, Fernan; Camargos, Paulo; Carreiro-Martins, Pedro; Casale, Thomas; Castillo-Vizuete, Jose-Antonio; Cecchi, Lorenzo; Teixeira, Maria do Ceu; Chang, Yoon-Seok; Loureiro, Claudia Chaves; Christoff, George; Ciprandi, Giorgio; Cirule, Ieva; Correia-de-Sousa, Jaime; Costa, Elisio M.; Cvetkovski, Biljana; de Vries, Govert; Del Giacco, Stefano; Devillier, Philippe; Dokic, Dejan; Douagui, Habib; Durham, Stephen R.; Enecilla, Maria Lourdes; Fiocchi, Alessandro; Fokkens, Wytske J.; Fontaine, Jean-Francois; Gawlik, Radoslaw; Gereda, Jose E.; Gil-Mata, Sara; Giuliano, Antonio F. M.; Gotua, Maia; Gradauskiene, Brigita; Guzman, Maria Antonieta; Hossny, Elham; Hrubisko, Martin; Iinuma, Tomohisa; Irani, Carla; Ispayeva, Zhanat; Ivancevich, Juan Carlos; Jartti, Tuomas; Jesenak, Milo S.; Julge, Kaja; Jutel, Marek; Kaidashev, Igor; Bennoor, Kazi S.; Khaltaev, Nicolai; Kirenga, Bruce; Kraxner, Helga; Kull, Inger; Kulus, Marek; Kuna, Piotr; Kupczyk, Maciej; Kurchenko, Andriy; La Grutta, Stefania; Lane, Stephen; Miculinic, Neven; Lee, Sang Min; Lan Le Thi Tuyet; Lkhagvaa, Battur; Louis, Renaud; Mahboub, Bassam; Makela, Mika; Makris, Michael; Maurer, Marcus; Melen, Eric; Milenkovic, Branislava; Mohammad, Yousser; Moniuszko, Marcin; Montefort, Stephen; Moreira, Andre; Moreno, Pablo; Mullol, Joaquim; Nadif, Rachel; Nakonechna, Alla; Navarro-Locsin, Cecilia Gretchen; Neffen, Hugo E.; Nekam, Kristof; Niedoszytko, Marek; Nunes, Elizabete; Nyembue, Dieudonne; O'Hehir, Robyn; Ollert, Markus; Ohta, Ken; Okamoto, Yoshitaka; Okubo, Kimihiro; Olze, Heidi; Padukudru, Mahesh Anand; Palomares, Oscar; Pali-Scholl, Isabella; Panzner, Petr; Palosuo, Kati; Park, Hae S.; Passalacqua, Giovanni; Patella, Vincenzo; Pawankar, Ruby; Petre, Benoit; Pitsios, Constantinos; Plavec, Davor; Popov, Todor A.; Puggioni, Francesca; Quirce, Santiago; Raciborski, Filip; Ramonaite, Agne; Recto, Marysia; Repka-Ramirez, Susana; Roberts, Graham; Robles-Velasco, Karla; Roche, Nicolas; Rodriguez-Gonzalez, Monica; Romualdez, Joel A.; Rottem, Menachem; Rouadi, Philip W.; Salapatas, Marianella; Sastre, Joaquin; Serpa, Faradiba S.; Sayah, Zineb; Scichilone, Nicola; Senna, Gianenrico; Sisul, Juan Carlos; Sole, Dirceu; Soto-Martinez, Manuel E.; Sova, Milan; Sozinova, Olga; Stevanovic, Katarina; Ulrik, Charlotte Suppli; Szylling, Anna; Tan, Frances M.; Tantilipikorn, Pongsakorn; Todo-Bom, Ana; Tomic-Spiric, Vesna; Tsaryk, Vladyslav; Tsiligianni, Ioanna; Urrutia-Pereira, Marilyn; Rostan, Marylin Valentin; Sofiev, Mikhail; Valovirta, Erkka; Van Eerd, Michiel; Van Ganse, Eric; Vasankari, Tuula; Vichyanond, Pakit; Viegi, Giovanni; Wallace, Dana; Wang, De Yun; Waserman, Susan; Wong, Gary; Worm, Margitta; Yusuf, Osman M.; Zaitoun, Fares; Zidarn, Mihaela
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Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks
err2024-08-05
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errOAAI
errMadan, Sumit; Kuehnel, Lisa; Froehlich, Holger; Hofmann-Apitius, Martin; Fluck, Juliane
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Transformer models in biomedicine
err2024-07-29
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errOAAI
errMadan, Sumit; Lentzen, Manuel; Brandt, Johannes; Rueckert, Daniel; Hofmann-Apitius, Martin; Froehlich, Holger
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MAATrica: a measure for assessing consistency and methods in medicinal and nutraceutical chemistry papers
err2024-07-01
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errOAAI
errPanzarella, Giulia; Gallo, Alessandro; Coecke, Sandra; Querci, Maddalena; Ortuso, Francesco; Hofmann-Apitius, Martin; Veltri, Pierangelo; Bajorath, Juergen; Alcaro, Stefano
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Semantic Harmonization of Alzheimer's Disease Datasets Using AD-Mapper
err2024-05-15
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errOAAI
errWegner, Philipp; Balabin, Helena; Ay, Mehmet Can; Bauermeister, Sarah; Killin, Lewis; Gallacher, John; Hofmann-Apitius, Martin; Salimi, Yasamin
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Data-Driven Thresholding Statistically Biases ATN Profiling across Cohort Datasets
err2024-01-01
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errOAAI
errSalimi, Y.; Domingo-Fernandez, D.; Hofmann-Apitius, M.; Birkenbihl, C.
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Design of the formalized and integrated Alzheimer's Disease Ontology and its application in retrieving textual data via text mining
err2023-12-02
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errOAAI
errZhang, Bide; Lage-Rupprecht, Vanessa; Wegner, Philipp; Sargsyan, Astghik; Gebel, Stephan; Jacobs, Marc; Klein, Juergen; Hofmann-Apitius, Martin; Kodamullil, Alpha Tom
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The Epilepsy Ontology: a community-based ontology tailored for semantic interoperability and text mining
err2023-03-23
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errOAAI
errSargsyan, Astghik; Wegner, Philipp; Gebel, Stephan; Kaladharan, Abish; Sethumadhavan, Priya; Lage-Rupprecht, Vanessa; Darms, Johannes; Schultz, Bruce; Klein, Juergen; Jacobs, Marc; Madan, Sumit; Hofmann-Apitius, Martin; Kodamullil, Alpha Tom
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Integrative analysis to identify shared mechanisms between schizophrenia and bipolar disorder and their comorbidities
err2023-03-01
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errBharadhwaj, Vinay Srinivas; Mubeen, Sarah; Sargsyan, Astghik; Jose, Geena Mariya; Geissler, Stefan; Hofmann-Apitius, Martin; Domingo-Fernandez, Daniel; Kodamullil, Alpha Tom
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Forecasting individual progression trajectories in Alzheimer's disease
err2023-02-10
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errOAAI
errMaheux, Etienne; Koval, Igor; Ortholand, Juliette; Birkenbihl, Colin; Archetti, Damiano; Bouteloup, Vincent; Epelbaum, Stephane; Dufouil, Carole; Hofmann-Apitius, Martin; Durrleman, Stanley
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Exploring the Complex Network of Heme-Triggered Effects on the Blood Coagulation System
err2022-10-10
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errOAAI
errMubeen, Sarah; Domingo-Fernandez, Daniel; Diaz del Ser, Sara; Solanki, Dhwani M.; Kodamullil, Alpha T.; Hofmann-Apitius, Martin; Hopp, Marie-T; Imhof, Diana
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