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Sébastien Gagneux

Swiss Tropical and Public Health Institute

83H-index
368Paper Count
2.7WCitation Count
Published Papers 152
Publication Date
Long-term spatiotemporal evolution of drug-resistant Mycobacterium tuberculosis in China
err2026-05-27
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errYiwang Chen; Jialei Liang; Dongxin Liu; Peng Xu; Qi Jiang; Tingting Yang; Qingyun Liu; Howard E. Takiff; Sebastien Gagneux; Qian Gao
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LysG-driven transcriptional network rewiring underlies lineage-specific phenotypes in Mycobacterium tuberculosis
err2026-03-23
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errAmir Banaei-Esfahani; Sonia Borrell; Andrej Trauner; Sebastian M. Gygli; Tige R. Rustad; Julia Feldmann; Ludovic C. Gillet; Olga T. Schubert; Christian Beisel; David R. Sherman; Ruedi Aebersold; Sebastien Gagneux; Ben C. Collins
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Large-scale testing of antimicrobial lethality at single-cell resolution predicts mycobacterial infection outcomes
err2026-01-09
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errAlexander Jovanovic; Frederick K. Bright; Ahmad Sadeghi; Basil Wicki; Santiago E. Caño Muñiz; Greta C. Giannini; Sara Toprak; Loïc Sauteur; Anna Rodoni; Andreas Wüst; Andréanne Lupien; Sonia Borrell; Dorothy M. Grogono; Nicole E. Wheeler; Philippe Dehio; Johannes Nemeth; Hans Pargger; Rachel Thomson; Scott C. Bell; Sebastien Gagneux; Josephine M. Bryant; Tingying Peng; Andreas H. Diacon; R. Andres Floto; Michael Abanto; Lucas Boeck
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Clinical and bacterial determinants of unfavorable tuberculosis treatment outcomes: an observational study in Georgia
err2025-11-17
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errGalo A. Goig; Chloé Loiseau; Nino Maghradze; Kakha Mchedlishvili; Teona Avaliani; Ana Tsutsunava; Daniela Brites; Sevda Kalkan; Sonia Borrell; Rusudan Aspindzelashvili; Zaza Avaliani; Maia Kipiani; Nestani Tukvadze; Levan Jugheli; Sebastien Gagneux
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Mycobacterium tuberculosis complex Lineage 1: A neglected cause of tuberculosis
err2025-10-01
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PREAI
errRojas, Venus Marie R.; Zwyer, Michaela; Bouaouina, Selim; Brites, Daniela; Borrell, Sonia; Gagneux, Sebastien
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Granulysin Antimicrobial Activity Promotes Dormancy in Mycobacterium tuberculosis
err2025-08-07
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errSarah Schmidiger; Erin F. McCaffrey; Jan M. Schmidt; Owais Abdul Hameed; Max Mpina; Anneth Tumbo; Elirehema Mfinanga; Frederick Haraka; Hellen Hiza; Mohamed Sasamalo; Jerry Hella; Michael Walch; Jacques Fellay; Sébastien Gagneux; Klaus Reither; José M. Carballido; Ainhoa Arbués; Damien Portevin
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Onset of infectiousness explains differences in transmissibility across Mycobacterium tuberculosis lineages
err2025-06-01
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errWindels, Etthel M.; Agui, Cecilia Valenzuela; de Jong, Bouke C.; Meehan, Conor J.; Loiseau, Chloe; Goig, Galo A.; Zwyer, Michaela; Borrell, Sonia; Brites, Daniela; Gagneux, Sebastien; Stadler, Tanja
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Mycobacteria beyond disease
err2025-04-28
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errTerence K. Tutumlu; Cédric Dollé; Katharina Kusejko; Sébastien Gagneux; Silvio D. Brugger; Huldrych F. Günthard; Johannes Nemeth
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Drug-induced differential culturability in diverse strains of Mycobacterium tuberculosis
err2025-01-28
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errMarch, Valerie F. A.; Maghradze, Nino; Mchedlishvili, Kakha; Avaliani, Teona; Aspindzelashvili, Rusudan; Avaliani, Zaza; Kipiani, Maia; Tukvadze, Nestani; Jugheli, Levan; Bouaouina, Selim; Doetsch, Anna; Goig, Galo A.; Gagneux, Sebastien; Borrell, Sonia
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A Genome-Focused Investigation Reveals the Emergence of a Mycobacterium tuberculosis Strain Related to Multidrug-Resistant Tuberculosis in the Amazon Region of Brazil
err2024-09-02
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errConceicao, Emilyn Costa; Loubser, Johannes; Guimaraes, Arthur Emil dos Santos; Sharma, Abhinav; Rutaihwa, Liliana Kokusanilwa; Dippenaar, Anzaan; Salvato, Richard Steiner; Souza e Guimaraes, Ricardo Jose de Paula; Lourenco, Maria Cristina da Silva; Barros, Wandyra Araujo; Cardoso, Ninarosa Calzavara; Warren, Robin Mark; Gagneux, Sebastien; Grinsztejn, Beatriz Gilda Jegerhorn; Suffys, Philip Noel; Lima, Karla Valeria Batista
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Diagnostic accuracy of a sequence-specific Mtb-DNA hybridization assay in urine: a case-control study including subclinical TB cases
err2024-06-04
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errTschan, Yves; Sasamalo, Mohamed; Hiza, Hellen; Fellay, Jacques; Gagneux, Sebastien; Reither, Klaus; Hella, Jerry; Portevin, Damien
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Genetic Characterization and Population Structure of Drug-Resistant Mycobacterium tuberculosis Isolated from Brazilian Patients Using Whole-Genome Sequencing
err2024-05-28
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errEsteves, Leonardo Souza; Gomes, Lia Lima; Brites, Daniela; Fandinho, Fatima Cristina Onofre; Bhering, Marcela; Pereira, Marcia Aparecida da Silva; Conceicao, Emilyn Costa; Salvato, Richard; da Costa, Bianca Porphirio; Medeiros, Reginalda Ferreira de Melo; Caldas, Paulo Cesar de Souza; Redner, Paulo; Dalcolmo, Margareth Pretti; Eldholm, Vegard; Gagneux, Sebastien; Rossetti, Maria Lucia; Kritski, Afranio Lineu; Suffys, Philip Noel
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HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa
err2024-05-02
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errWindels, Etthel M.; Wampande, Eddie M.; Joloba, Moses L.; Boom, W. Henry; Goig, Galo A.; Cox, Helen; Hella, Jerry; Borrell, Sonia; Gagneux, Sebastien; Brites, Daniela; Stadler, Tanja
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Bacterial diversity dominates variable macrophage responses of tuberculosis patients in Tanzania
err2024-04-23
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errHiza, Hellen; Zwyer, Michaela; Hella, Jerry; Arbues, Ainhoa; Sasamalo, Mohamed; Borrell, Sonia; Xu, Zhi Ming; Ross, Amanda; Brites, Daniela; Fellay, Jacques; Reither, Klaus; Gagneux, Sebastien; Portevin, Damien
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Lack of methoxy- mycolates characterizes the geographically restricted lineage 7 of Mycobacterium tuberculosis complex (May, 10.1099/mgen.0.001011, 2023)
err2024-03-28
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errHailu, Elena; Cantillon, Daire; Madrazo, Carlos; Rose, Graham; Wheeler, Paul R.; Golby, Paul; Adnew, Bethlehem; Gagneux, Sebastien; Aseffa, Abraham; Gordon, Stephen, V; Comas, Inaki; Young, Douglas B.; Waddell, Simon J.; Larrouy-Maumus, Gerald; Berg, Stefan
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Lack of methoxy- mycolates characterizes the geographically restricted lineage 7 of Mycobacterium tuberculosis complex
err2023-05-12
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errHailu, Elena; Cantillon, Daire; Madrazo, Carlos; Rose, Graham; Wheeler, Paul R.; Golby, Paul; Adnew, Bethlehem; Gagneux, Sebastien; Aseffa, Abraham; V. Gordon, Stephen; Comas, Inaki; Young, Douglas B.; Waddell, Simon J.; Larrouy-Maumus, Gerald; Berg, Stefan
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The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot
err2023-04-08
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errLoiseau, Chloe; Windels, Etthel M.; Gygli, Sebastian M.; Jugheli, Levan; Maghradze, Nino; Brites, Daniela; Ross, Amanda; Goig, Galo; Reinhard, Miriam; Borrell, Sonia; Trauner, Andrej; Dotsch, Anna; Aspindzelashvili, Rusudan; Denes, Rebecca; Reither, Klaus; Beisel, Christian; Tukvadze, Nestani; Avaliani, Zaza; Stadler, Tanja; Gagneux, Sebastien
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Back-to-Africa introductions of Mycobacterium tuberculosis as the main cause of tuberculosis in Dar es Salaam, Tanzania
err2023-04-04
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errZwyer, Michaela; Rutaihwa, Liliana; Windels, Etthel; Hella, Jerry; Menardo, Fabrizio; Sasamalo, Mohamed; Sommer, Gregor; Schmulling, Lena; Borrell, Sonia; Reinhard, Miriam C.; Dotsch, Anna; Hiza, Hellen; Stritt, Christoph D.; Sikalengo, George; Fenner, Lukas; De Jong, Bouke; Kato-Maeda, Midori; Jugheli, Levan; Ernst, Joel; Niemann, Stefan; Jeljeli, Leila; Ballif, Marie; Egger, Matthias; Rakotosamimanana, Niaina J.; Yeboah-Manu, Dorothy; Asare, Prince; Malla, Bijaya; Dou, Horng Yunn; Zetola, Nicolas; Wilkinson, Robert; Cox, Helen; Carter, E. Jane; Gnokoro, Joachim; Yotebieng, Marcel; Gotuzzo, Eduardo; Abimiku, Alash'le; Avihingsanon, Anchalee; Xu, Zhi Ming; Fellay, Jacques; Portevin, Damien; Reither, Klaus; Stadler, Tanja; Gagneux, Sebastien; Brites, Daniela
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Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement
err2023-04-01
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PREAI
errDominguez, Jose; Boeree, Martin J.; Cambau, Emmanuelle; Chesov, Dumitru; Conradie, Francesca; Cox, Vivian; Dheda, Keertan; Dudnyk, Andrii; Farhat, Maha R.; Gagneux, Sebastien; Grobusch, Martin P.; Groeschel, Matthias, I; Guglielmetti, Lorenzo; Kontsevaya, Irina; Lange, Berit; van Leth, Frank; Lienhardt, Christian; Mandalakas, Anna M.; Maurer, Florian P.; Merker, Matthias; Miotto, Paolo; Molina-Moya, Barbara; Morel, Florence; Niemann, Stefan; Veziris, Nicolas; Whitelaw, Andrew; Horsburgh Jr, Charles R.; Lange, Christoph
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Analysis of drug resistance among difficult-to-treat tuberculosis patients in Ghana identifies several pre-XDR TB cases
err2023-01-12
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errOtchere, Isaac Darko; Morgan, Portia Abena; Asare, Prince; Osei-Wusu, Stephen; Aboagye, Samuel Yaw; Yirenkyi, Stephen Ofori; Musah, Abdul Basit; Danso, Emelia Konadu; Tetteh-Ocloo, Georgina; Afum, Theophilus; Asante-Poku, Adwoa; Laryea, Clement; Poku, Yaw Adusi; Bonsu, Frank; Gagneux, Sebastien; Yeboah-Manu, Dorothy
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