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Hugo Ceulemans

Johnson & Johnson

36H-index
101Paper Count
6.5KCitation Count
Published Papers 44
Publication Date
MolAgent: Biomolecular Property Estimation in the Agentic Era
err2025-10-01
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PREAI
errGomez-Tamayo, Jose Carlos; Tavernier, Joris; Aerts, Roy; Dyubankova, Natalia; Van Rompaey, Dries; Menon, Sairam; Steijaert, Marvin; Wegner, Jorg Kurt; Ceulemans, Hugo; Tresadern, Gary; De Winter, Hans; Ahmad, Mazen
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Improving route development using convergent retrosynthesis planning
err2025-02-27
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errOAAI
errTorren-Peraire, Paula; Verhoeven, Jonas; Herman, Dorota; Ceulemans, Hugo; Tetko, Igor V.; Wegner, Joerg K.
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Toward Dose Prediction at Point of Design
err2024-12-12
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PREAI
errVan Rompaey, Dries; Chaudhuri, Siladitya Ray; Ahmad, Mazen; Cisar, Justin; van den Bergh, An; Ash, Jeremy; Wu, Zhe; Bryan, Marian C.; Edwards, James P.; Desjarlais, Renee; Wegner, Jorg Kurt; Ceulemans, Hugo; Mitra, Kaushik; Polidori, David
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Low concentration cell painting images enable the identification of highly potent compounds
err2024-10-17
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errOAAI
errHa, Son V.; Jaensch, Steffen; Freitas, Lorena G. A.; Herman, Dorota; Czodrowski, Paul; Ceulemans, Hugo
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MELLODDY: Cross-pharma Federated Learning at Unprecedented Scale Unlocks Benefits in QSAR without Compromising Proprietary Information
err2023-08-29
err34
errOAAI
errHeyndrickx, Wouter; Mervin, Lewis; Morawietz, Tobias; Sturm, Noe; Friedrich, Lukas; Zalewski, Adam; Pentina, Anastasia; Humbeck, Lina; Oldenhof, Martijn; Niwayama, Ritsuya; Schmidtke, Peter; Fechner, Nikolas; Simm, Jaak; Arany, Adam; Drizard, Nicolas; Jabal, Rama; Afanasyeva, Arina; Loeb, Regis; Verma, Shlok; Harnqvist, Simon; Holmes, Matthew; Pejo, Balazs; Telenczuk, Maria; Holway, Nicholas; Dieckmann, Arne; Rieke, Nicola; Zumsande, Friederike; Clevert, Djork-Arne; Krug, Michael; Luscombe, Christopher; Green, Darren; Ertl, Peter; Antal, Peter; Marcus, David; Do Huu, Nicolas; Fuji, Hideyoshi; Pickett, Stephen; Acs, Gergely; Boniface, Eric; Beck, Bernd; Sun, Yax; Gohier, Arnaud; Rippmann, Friedrich; Engkvist, Ola; Goeller, Andreas H.; Moreau, Yves; Galtier, Mathieu N.; Schuffenhauer, Ansgar; Ceulemans, Hugo
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Chemistry-Based Modeling on Phenotype-Based Drug-Induced Liver Injury Annotation: From Public to Proprietary Data
err2023-08-09
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errOAAI
errMoein, Mohammad; Heinonen, Markus; Mesens, Natalie; Chamanza, Ronnie; Amuzie, Chidozie; Will, Yvonne; Ceulemans, Hugo; Kaski, Samuel; Herman, Dorota
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Leveraging Cell Painting Images to Expand the Applicability Domain and Actively Improve Deep Learning Quantitative Structure-Activity Relationship Models
err2023-06-16
err9
errOAAI
errHerman, Dorota; Kandula, Maciej M. M.; Freitas, Lorena G. A.; van Dongen, Caressa; Van, Thanh Le; Mesens, Natalie; Jaensch, Steffen; Gustin, Emmanuel; Micholt, Liesbeth; Lardeau, Charles-Hugues; Varsakelis, Christos; Reumers, Joke; Zoffmann, Sannah; Will, Yvonne; Peeters, Pieter J. J.; Ceulemans, Hugo
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A yeast exosome cofactor, Mpp6, functions in RNA surveillance and in the degradation of noncoding RNA transcripts
err2023-03-27
err86
errOAAI
errMilligan, Laura; Decourty, Laurence; Saveanu, Cosmin; Rappsilber, Juri; Ceulemans, Hugo; Jacquier, Alain; Tollervey, David
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Human UBN1 Is an Ortholog of Yeast Hpc2p and Has an Essential Role in the HIRA/ASF1a Chromatin-Remodeling Pathway in Senescent Cells
err2023-03-21
err121
errOAAI
errBanumathy, Gowrishankar; Somaiah, Neeta; Zhang, Rugang; Tang, Yong; Hoffmann, Jason; Andrake, Mark; Ceulemans, Hugo; Schultz, David; Marmorstein, Ronen; Adams, Peter D.
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Development and implementation of an enterprise-wide predictive model for early absorption, distribution, metabolism and excretion properties
err2021-09-16
err15
errOAAI
errKumar, Kiran; Chupakhin, Vladimir; Vos, Ann; Morrison, Denise; Rassokhin, Dmitrii; Dellwo, Martin J.; McCormick, Keith; Paternoster, Eric; Ceulemans, Hugo; DesJarlais, Renee L.
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Image-based profiling for drug discovery: due for a machine-learning upgrade?
err2020-12-22
err193
errOAAI
errChandrasekaran, Srinivas Niranj; Ceulemans, Hugo; Boyd, Justin D.; Carpenter, Anne E.
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Tales of 1,008 small molecules: phenomic profiling through live-cell imaging in a panel of reporter cell lines
err2020-08-06
err35
errOAAI
errCox, Michael J.; Jaensch, Steffen; Vande Waeter, Jelle; Cougnaud, Laure; Seynaeve, Daan; Benalla, Soulaiman; Koo, Seong Joo; VanDen Wyngaert, Ilse; Neefs, Jean-Marc; Malkov, Dmitry; Bittremieux, Mart; Steemans, Margino; Peeters, Pieter J.; Wegner, Jorg Kurt; Ceulemans, Hugo; Gustin, Emmanuel; Chong, Yolanda T.; Goehlmann, Hinrich W. H.
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Deep immune profiling of patients treated with lenalidomide and dexamethasone with or without daratumumab
errLEUKEMIA
IF13.4
err2020-05-26
err78
errOAAI
errCasneuf, Tineke; Adams, Homer C., III; van de Donk, Niels W. C. J.; Abraham, Yann; Bald, Jaime; Vanhoof, Greet; Van der Borght, Koen; Smets, Tina; Foulk, Brad; Nielsen, Karl C.; Rusbuldt, Joshua; Axel, Amy; Lysaght, Andrew; Ceulemans, Hugo; Stevenaert, Frederik; Usmani, Saad Z.; Plesner, Torben; Avet-Loiseau, Herve; Nijhof, Inger; Mutis, Tuna; Schecter, Jordan M.; Chiu, Christopher; Bahlis, Nizar J.
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Industry-scale application and evaluation of deep learning for drug target prediction
err2020-04-19
err26
errOAAI
errSturm, Noe; Mayr, Andreas; Thanh Le Van; Chupakhin, Vladimir; Ceulemans, Hugo; Wegner, Joerg; Golib-Dzib, Jose-Felipe; Jeliazkova, Nina; Vandriessche, Yves; Bohm, Stanislav; Cima, Vojtech; Martinovic, Jan; Greene, Nigel; Vander Aa, Tom; Ashby, Thomas J.; Hochreiter, Sepp; Engkvist, Ola; Klambauer, Guenter; Chen, Hongming
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Fast semi-supervised discriminant analysis for binary classification of large data sets
err2019-07-01
err10
errOAAI
errTavernier, Joris; Simm, Jaak; Meerbergen, Karl; Wegner, Joerg Kurt; Ceuleman, Hugo; Moreau, Yves
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Repurposing High-Throughput Image Assays Enables Biological Activity Prediction for Drug Discovery
err2018-05-01
err148
errOAAI
errSimm, Jaak; Klambauer, Guenter; Arany, Adam; Steijaert, Marvin; Wegner, Jorg Kurt; Gustin, Emmanuel; Chupakhin, Vladimir; Chong, Yolanda T.; Vialard, Jorge; Buijnsters, Peter; Velter, Ingrid; Vapirev, Alexander; Singh, Shantanu; Carpenter, Anne E.; Wuyts, Roel; Hochreiter, Sepp; Moreau, Yves; Ceulemans, Hugo
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Large-scale comparison of machine learning methods for drug target prediction on ChEMBL
err2018-01-01
err330
errOAAI
errMayr, Andreas; Klambauer, Guenter; Unterthiner, Thomas; Steijaert, Marvin; Wegner, Jorg K.; Ceulemans, Hugo; Clevert, Djork-Arne; Hochreiter, Sepp
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BIGL: Biochemically Intuitive Generalized Loewe null model for prediction of the expected combined effect compatible with partial agonism and antagonism
err2017-12-20
err27
errOAAI
errVan der Borght, Koen; Tourny, Annelies; Bagdziunas, Rytis; Thas, Olivier; Nazarov, Maxim; Turner, Heather; Verbist, Bie; Ceulemans, Hugo
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Erratum to: ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics (vol 9, pg 1, 2017)
err2017-06-14
err3
errOAAI
errSun, Jiangming; Jeliazkova, Nina; Chupakhin, Vladimir; Golib-Dzib, Jose-Felipe; Engkvist, Ola; Carlsson, Lars; Wegner, Jorg; Ceulemans, Hugo; Georgiev, Ivan; Jeliazkov, Vedrin; Kochev, Nikolay; Ashby, Thomas J.; Chen, Hongming
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ExCAPE-DB: an integrated large scale dataset facilitating Big Data analysis in chemogenomics
err2017-03-07
err136
errOAAI
errSun, Jiangming; Jeliazkova, Nina; Chupakin, Vladimir; Golib-Dzib, Jose-Felipe; Engkvist, Ola; Carlsson, Lars; Wegner, Jorg; Ceulemans, Hugo; Georgiev, Ivan; Jeliazkov, Vedrin; Kochev, Nikolay; Ashby, Thomas J.; Chen, Hongming
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