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Stephen Baker

agency for science, technology and research

91H-index
762Paper Count
5.9WCitation Count
Published Papers 297
Publication Date
Modular RNA:DNA Nanostructures Enable Nanopore Profiling of rRNA Processing and rRNA Variants
err2026-05-13
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errFilip Boskovic; Sarah Sandler; Simon Brauburger; Yuan Shui; Bhavik Kumar; Joana Pereira Dias; Plamena Naydenova; Jinbo Zhu; Stephen Baker; Ulrich F. Keyser
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DNA Nanoarray for Multiplexed RNA Detection With Single-Molecule Readout
err2026-04-28
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errYunxuan Li; Yesheng Wang; Chunmiao Yu; Siyu Hou; Elli Mylona; Plamena Naydenova; Jingyuan Zhao; Hong Yuan; Jingsong Duan; Hendrik F. P. Runge; Stephen Baker; Jinbo Zhu; Ulrich F. Keyser
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FluoEcoli-Instance: A High-Content Fluorescence Microscopy Dataset and CBAM-Enhanced Hybrid Task Cascade for <italic>E. Coli</italic> Instance Segmentation
err2025-12-24
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PREAI
errSon T. Huynh; Hai X. Nguyen; Dat Q. Duong; Tien K. Nguyen; Nhi K. P. Nguyen; Hoang Tran Le Nguyen; Phuong N. Vu; Nghi P. G. Nguyen; Khoi D. Vu; Hoa Q. N. Ho; Tuan-Anh Tran; Stephen Baker; Binh T. Nguyen
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Comparison of sagittal and coronal views in point-of-care ultrasound assessment of gastric distention: A prospective cohort study
err2025-11-24
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PREAI
errNicolette Meka; Kaitlin Krauss; Katie Rong; Timothy Herbst; Caroline Berberian; James Galske; Michael Kosover; Delaney Kehoe; Stephen Baker; Evan Masley; Regina Lopez-Merrill; Regina Kostyun; Meghan Kelly Herbst
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High abundance of antimicrobial resistance genes in chicken flocks receiving antimicrobial treatment in Vietnamese poultry production
err2025-08-01
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errDutta, Avijit; Kiet, Bach Tuan; Nhung, Nguyen Thi; Higginson, Ellen; Kermack, Leanne; Thi Phuong Yen, Nguyen; Phu, Doan Hoang; Choisy, Marc; Carrique-Mas, Juan; Baker, Stephen
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Nanopore detection of single-nucleotide RNA mutations and modifications with programmable nanolatches
err2025-06-27
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errYunxuan Li; Siong Chen Meng; Yesheng Wang; Casey M. Platnich; Max K. Earle; Elli Mylona; Plamena Naydenova; Stephen Baker; Jinbo Zhu; Ulrich F. Keyser
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Detection and Antimicrobial Susceptibility of Carbapenem-Resistant Organisms Isolated in the Center of Care and Protection of Orphan Children, Vietnam
err2025-01-01
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errKim, Nguyen Van; Thang, Tran Dang; Long, Cao Thang; Ivanovitch, Katiya; Baker, Stephen; Noisumdaeng, Pirom
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Shigella sonnei: epidemiology, evolution, pathogenesis, resistance and host interactions
err2024-11-27
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PREAI
errScott, Timothy A.; Baker, Kate S.; Trotter, Caroline; Jenkins, Claire; Mostowy, Serge; Hawkey, Jane; Schmidt, Hayden; Holt, Kathryn E.; Thomson, Nicholas R.; Baker, Stephen
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Limited Evidence of Spillover of Antimicrobial-Resistant Klebsiella pneumoniae from Animal/Environmental Reservoirs to Humans in Vellore, India
err2024-11-12
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errJacob, Jobin John; Aravind, V.; Beresford-Jones, Benjamin S.; Lal, Y. Binesh; Shankar, Chaitra; Yesudoss, M.; Abdullah, Fiza; Priya, T. Monisha; Kulkarni, Sanika; Baker, Stephen; Veeraraghavan, Balaji; Walia, Kamini
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Diversity, functional classification and genotyping of SHV /3-lactamases in Klebsiella pneumoniae
err2024-10-21
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errTsang, Kara K.; Lam, Margaret M. C.; Wick, Ryan R.; Wyres, Kelly L.; Bachman, Michael; Baker, Stephen; Barry, Katherine; Brisse, Sylvain; Campino, Susana; Chiaverini, Alexandra; Cirillo, Daniela Maria; Clark, Taane; Corander, Jukka; Corbella, Marta; Cornacchia, Alessandra; Cuenod, Aline; D'Alterio, Nicola; Di Marco, Federico; Donado-Godoy, Pilar; Egli, Adrian; Farzana, Refath; Feil, Edward J.; Fostervold, Aasmund; Gorrie, Claire L.; Hassan, Brekhna; Hetland, Marit Andrea Klokkhammer; Hoa, Le Nguyen Minh; Hoi, Le Thi; Howden, Benjamin; Ikhimiukor, Odion O.; Jenney, Adam W. J.; Kaspersen, Hakon; Khokhar, Fahad; Leangapichart, Thongpan; Ligowska-Marzeta, Malgorzata; Lohr, Iren Hoyland; Long, Scott W.; Mathers, Amy J.; Mcarthur, Andrew G.; Nagaraj, Geetha; Oaikhena, Anderson O.; Okeke, Iruka N.; Perdigao, Joao; Parikh, Hardik; Pham, My H.; Pomilio, Francesco; Raffelsberger, Niclas; Rakotondrasoa, Andriniaina; Kumar, K. L. Ravi; Roberts, Leah W.; Rodrigues, Carla; Samuelsen, Orjan; Sands, Kirsty; Sassera, Davide; Seth-Smith, Helena; Shamanna, Varun; Sherry, Norelle L.; Sia, Sonia; Spadar, Anton; Stoesser, Nicole; Sunde, Marianne; Sundsfjord, Arnfinn; Thach, Pham Ngoc; Thomson, Nicholas R.; Thorpe, Harry A.; Torok, M. Estee; Trang, Van Dinh; Trung, Nguyen Vu; Vornhagen, Jay; Walsh, Timothy; Warne, Ben; Wilson, Hayley; Wright, Gerard D.; Holt, Kathryn E.
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The origins of haplotype 58 (H58) Salmonella enterica serovar Typhi
err2024-06-28
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errCarey, Megan E.; Thi Nguyen, To Nguyen; Tran, Do Hoang Nhu; Dyson, Zoe A.; Keane, Jacqueline A.; Thanh, Duy Pham; Mylona, Elli; Nair, Satheesh; Chattaway, Marie; Baker, Stephen
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A retrospective investigation of the population structure and geospatial distribution of Salmonella Paratyphi A in Kathmandu, Nepal
err2024-06-18
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errMylona, Elli; Thanh, Duy Pham; Keane, Jacqueline A.; Dongol, Sabina; Basnyat, Buddha; Dolecek, Christiane; Vinh, Phat Voong; Thieu, Nga Tran Vu; Nguyen, To Nguyen Thi; Karkey, Abhilasha; Baker, Stephen
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The frequency and associated factors of typhoid carriage in patients undergoing cholecystectomy for gallbladder disease in Pakistan: A cross-sectional study
err2024-06-12
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errQureshi, Sonia; Maria, Noshi; Chawla, Tabish; Iqbal, Junaid; Kazi, Abdul Momin; Adnan, Mehreen; Hotwani, Aneeta; Rahman, Najeeb; Sadiq, Muhammed Wahhaab; Charles, Richelle; Baker, Stephen; Qamar, Farah Naz
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Genomic insights unveil the plasmid transfer mechanism and epidemiology of hypervirulent Klebsiella pneumoniae in Vietnam
err2024-05-17
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errNguyen, Quynh; Nguyen, Yen Thi Phuong; Ha, Tuyen Thanh; Tran, Dung Thi Ngoc; Voong, Phat Vinh; Chau, Vinh; Nguyen, Phuong Luong Nha; Le, Ngan Thi Quynh; Nguyen, Lan Phu Huong; Nguyen, To Thi Nguyen; Trinh, Tan Van; Carrique-Mas, Juan J.; Baker, Stephen; Thwaites, Guy; Rabaa, Maia A.; Choisy, Marc; Chung, Hao The; Pham, Duy Thanh
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Incidence of typhoid fever in Burkina Faso, Democratic Republic of the Congo, Ethiopia, Ghana, Madagascar, and Nigeria (the Severe Typhoid in Africa programme): a population-based study
err2024-04-01
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errMarks, Florian; Im, Justin; Park, Se Eun; Pak, Gi Deok; Jeon, Hyon Jin; Nana, Lady Rosny Wandji; Phoba, Marie-France; Mbuyi-Kalonji, Lisette; Mogeni, Ondari D.; Yeshitela, Biruk; Panzner, Ursula; Espinoza, Ligia Maria Cruz; Beyene, Tigist; Owusu-Ansah, Michael; Twumasi-Ankrah, Sampson; Yeshambaw, Melese; Alemu, Ashenafi; Adewusi, Oluwafemi J.; Adekanmbi, Olukemi; Higginson, Ellen; Adepoju, Akinlolu; Agbi, Sarah; Cakpo, Enoch G.; Ogunleye, Veronica O.; Tunda, Gaelle Nkoji; Ikhimiukor, Odion O.; Mbuyamba, Jules; Toy, Trevor; Agyapong, Francis Opoku; Osei, Isaac; Amuasi, John; Razafindrabe, Tsiriniaina Jean Luco; Raminosoa, Tiana Mirana; Nyirenda, Gabriel; Randriamampionona, Njariharinjakampionona; Seo, Hyeong Won; Seo, Hyejin; Siribie, Mohamadou; Carey, Megan E.; Owusu, Michael; Meyer, Christian G.; Rakotozandrindrainy, Ndrainaharimira; Sarpong, Nimarko; Razafindrakalia, Mathilde; Razafimanantsoa, Ravomialisoa; Ouedraogo, Moussa; Kim, Yeonseon J.; Lee, Jooah; Zellweger, Raphael M.; Kang, Sophie S. Y.; Park, Ju Yeon; Crump, John A.; Hardy, Liselotte; Jacobs, Jan; Garrett, Denise O.; Andrews, Jason R.; Poudyal, Nimesh; Kim, Deok Ryun; Clemens, John D.; Baker, Stephen G.; Kim, Jerome H.; Dougan, Gordon; Sugimoto, Jonathan D.; Van Puyvelde, Sandra; Kehinde, Aderemi; Popoola, Oluwafemi A.; Mogasale, Vittal; Breiman, Robert F.; MacWright, William R.; Aseffa, Abraham; Tadesse, Birkneh Tilahun; Haselbeck, Andrea; Adu-Sarkodie, Yaw; Teferi, Mekonnen; Bassiahi, Abdramane Soura; Okeke, Iruka N.; Lunguya-Metila, Octavie; Owusu-Dabo, Ellis; Rakotozandrindrainy, Raphael
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A metagenomic prospective cohort study on gut microbiome composition and clinical infection in small bowel transplantation
err2024-03-04
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errMadhav, Archana; Bousfield, Rachel; Pereira-Dias, Joana; Cormie, Claire; Forrest, Sally; Keane, Jacqueline; Kermack, Leanne; Higginson, Ellen; Dougan, Gordon; Spiers, Harry; Massey, Dunecan; Sharkey, Lisa; Rutter, Charlotte; Woodward, Jeremy; Russell, Neil; Amin, Irum; Butler, Andrew; Atkinson, Kayleigh; Dymond, Tom; Scott, Josefin Bartholdson; Baker, Stephen; Gkrania-Klotsas, Effrossyni
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Impact of penicillin allergy labels on surgical site infections in a large UK cohort of gastrointestinal surgery patients
err2024-02-16
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errJones, Nick K.; Tom, Brian; Simillis, Constantinos; Bennet, John; Gourgiotis, Stavros; Griffin, Jo; Blaza, Helen; Nasser, Shuaib; Baker, Stephen; Gouliouris, Theodore
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Rapid Detection of Antimicrobial Resistance Genes in Critically Ill Children Using a Custom TaqMan Array Card
err2023-12-05
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errClark, John A.; Curran, Martin D.; Gouliouris, Theodore; Morris, Andrew Conway; Bousfield, Rachel; Navapurkar, Vilas; Kean, Iain R. L.; Daubney, Esther; White, Deborah; Baker, Stephen; Pathan, Nazima
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Estimating disease burden of rotavirus in floodwater through traffic in the urban areas: A case study of Can Tho city, Vietnam
err2023-11-29
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errHuynh, Thi Thao Nguyen; Hofstra, Nynke; Nguyen, Hong Quan; Baker, Stephen; Pathirana, Assela; Perez, Gerald A. Corzo; Zevenbergen, Chris
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An integrated nationwide genomics study reveals transmission modes of typhoid fever in China
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IF4.7
err2023-10-31
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errFeng, Ye; Pan, Hang; Zheng, Beiwen; Li, Fang; Teng, Lin; Jiang, Zhijie; Feng, Mengyao; Zhou, Xiao; Peng, Xianqi; Xu, Xuebin; Wang, Haoqiu; Wu, Beibei; Xiao, Yonghong; Baker, Stephen; Zhao, Guoping; Yue, Min
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