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Paul A. Khavari

State University System of Florida

82H-index
264Paper Count
2.9WCitation Count
Published Papers 134
Publication Date
Characterizations of G-Quadruplex RNA-Protein Interactions in Living Cells
err2026-04-01
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PREAI
errTang, Feng; Liang, Xiaochen; Porter, Douglas F.; Miao, Weili; Maehlmann, Kevin; Yuan, Jun; Khavari, Paul A.; Wang, Yinsheng
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Bridging technical innovation and computational advances in studies of RNA–protein assemblies
err2026-02-16
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PREAI
errLuca Ducoli; Suhas Srinivasan; Eimon Amjadi; Paul A. Khavari
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Regulation of RNA-binding proteins by small biomolecules
err2025-11-06
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PREAI
errWeili Miao; Douglas F. Porter; Vanessa Lopez-Pajares; Paul A. Khavari
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Iron-sensitive RNA regulation by poly C-binding proteins
err2025-10-14
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PREAI
errGoda, Grant A.; Forbes, Kwame; Sullivan, Michael E.; Eramo, Grace A.; Breen, Conner; Porter, Douglas F.; Khavari, Paul A.; Dominguez, Daniel; Aleman, Maria M.
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In Vivo CRISPR Interference Screen Reveals Long Noncoding RNA Portfolio Crucial for Cutaneous Squamous Cell Carcinoma Tumor Growth
err2025-05-27
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errOAAI
errGyuhyeon Kim; Zurab Siprashvili; Xue Yang; Jordan M. Meyers; Andrew Ji; Paul A. Khavari; Luca Ducoli
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Glucose modulates IRF6 transcription factor dimerization to enable epidermal differentiation
err2025-05-01
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errOAAI
errLopez-Pajares, Vanessa; Bhaduri, Aparna; Zhao, Yang; Gowrishankar, Gayatri; Donohue, Laura K. H.; Guo, Margaret G.; Siprashvili, Zurab; Miao, Weili; Nguyen, Duy T.; Yang, Xue; Li, Albert M.; Tung, Alan Sheng-Hwa; Shanderson, Ronald L.; Winge, Marten C. G.; Meservey, Lindsey M.; Srinivasan, Suhas; Meyers, Robin M.; Guerrero, Angela; Ji, Andrew L.; Garcia, Omar S.; Tao, Shiying; Gambhir, Sanjiv S.; Long, Jonathan Z.; Ye, Jiangbin; Khavari, Paul A.
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irCLIP-RNP and Re-CLIP reveal patterns of dynamic protein assemblies on RNA (Mar, 10.1038/s41586-025-08787-5, 2025)
errNATURE
IF48.5
err2025-04-28
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PREAI
errDucoli, Luca; Zarnegar, Brian J.; Porter, Douglas F.; Meyers, Robin M.; Miao, Weili; Riley, Nicholas M.; Srinivasan, Suhas; Jackrazi, Leandra V.; Yang, Yen-Yu; Li, Zhouxian; Wang, Yinsheng; Bertozzi, Carolyn R.; Flynn, Ryan A.; Khavari, Paul A.
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Repurposing an epithelial sodium channel inhibitor as a therapy for murine and human skin inflammation
err2024-12-11
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PREAI
errWinge, Marten C. G.; Nasrallah, Mazen; Jackrazi, Leandra V.; Guo, Konnie Q.; Fuhriman, Jessica M.; Szafran, Rebecca; Ramanathan, Muthukumar; Gurevich, Irina; Nguyen, Ngon T.; Siprashvili, Zurab; Inayathullah, Mohammed; Rajadas, Jayakumar; Porter, Douglas F.; Khavari, Paul A.; Butte, Atul J.; Marinkovich, M. Peter
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Glucose binds and activates NSUN2 to promote translation and epidermal differentiation
err2024-11-20
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errOAAI
errMiao, Weili; Porter, Douglas F.; Li, Ya; Meservey, Lindsey M.; Yang, Yen-Yu; Ma, Chengjie; Ferguson, Ian D.; Tien, Vivian B.; Jack, Timothy M.; Ducoli, Luca; Lopez-Pajares, Vanessa; Tao, Shiying; Savage, Paul B.; Wang, Yinsheng; Khavari, Paul A.
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Integrative analyses highlight functional regulatory variants associated with neuropsychiatric diseases
err2023-10-19
err5
PREAI
errGuo, Margaret G.; Reynolds, David L.; Ang, Cheen E.; Liu, Yingfei; Zhao, Yang; Donohue, Laura K. H.; Siprashvili, Zurab; Yang, Xue; Yoo, Yongjin; Mondal, Smarajit; Hong, Audrey; Kain, Jessica; Meservey, Lindsey; Fabo, Tania; Elfaki, Ibtihal; Kellman, Laura N.; Abell, Nathan S.; Pershad, Yash; Bayat, Vafa; Etminani, Payam; Holodniy, Mark; Geschwind, Daniel H.; Montgomery, Stephen B.; Duncan, Laramie E.; Urban, Alexander E.; Altman, Russ B.; Wernig, Marius; Khavari, Paul A.
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Advances in cutaneous squamous cell carcinoma
err2023-06-07
err38
PREAI
errWinge, Marten C. G.; Kellman, Laura N.; Guo, Konnie; Tang, Jean Y.; Swetter, Susan M.; Aasi, Sumaira Z.; Sarin, Kavita Y.; Chang, Anne Lynn S.; Khavari, Paul A.
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The spatial landscape of clonal somatic copy number alterations in benign and malignant prostate epithelia
err2023-06-02
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PREAI
errErickson, Andrew; He, Mengxiao; Berglund, Emelie; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Ludvig; Bergenstrahle, Joseph; Larsson, Ludvig; Galicia, Leire Alonso; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Doultsinos, Dimitrios; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.; Lundeberg, Joakim
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A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation
err2022-11-01
err10
errOAAI
errDonohue, Laura K. H.; Guo, Margaret G.; Zhao, Yang; Jung, Namyoung; Bussat, Rose T.; Kim, Daniel S.; Neela, Poornima H.; Kellman, Laura N.; Garcia, Omar S.; Meyers, Robin M.; Altman, Russ B.; Khavari, Paul A.
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PROBER identifies proteins associated with programmable sequence-specific DNA in living cells
err2022-08-04
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errOAAI
errMondal, Smarajit; Ramanathan, Muthukumar; Miao, Weili; Meyers, Robin M.; Rao, Deepti; Lopez-Pajares, Vanessa; Siprashvili, Zurab; Reynolds, David L.; Porter, Douglas F.; Ferguson, Ian; Neela, Poornima; Zhao, Yang; Meservey, Lindsey M.; Guo, Margaret; Yang, Yen-Yu; Li, Lin; Wang, Yinsheng; Khavari, Paul A.
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Targeted Proteomic Approaches for Proteome-Wide Characterizations of the AMP-Binding Capacities of Kinases
err2022-07-12
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errOAAI
errMiao, Weili; Yin, Jiekai; Porter, Douglas F.; Jiang, Xiaogang; Khavari, Paul A.; Wang, Yinsheng
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The spatial landscape of clonal somatic mutations in benign and malignant tissue
err2022-05-15
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PREAI
errErickson, Andrew; Berglund, Emelie; He, Mengxiao; Marklund, Maja; Mirzazadeh, Reza; Schultz, Niklas; Bergenstrahle, Ludvig; Kvastad, Linda; Andersson, Alma; Bergenstrahle, Joseph; Larsson, Ludvig; Shamikh, Alia; Basmaci, Elisa; De Stahl, Teresita Diaz; Rajakumar, Timothy; Thrane, Kim; Ji, Andrew L.; Khavari, Paul A.; Tarish, Firaz; Tanoglidi, Anna; Maaskola, Jonas; Colling, Richard; Mirtti, Tuomas; Hamdy, Freddie C.; Woodcock, Dan J.; Helleday, Thomas; Mills, Ian G.; Lamb, Alastair D.
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Super-resolved spatial transcriptomics by deep data fusion
err2021-11-29
err66
errOAAI
errBergenstrahle, Ludvig; He, Bryan; Bergenstrahle, Joseph; Abalo, Xesus; Mirzazadeh, Reza; Thrane, Kim; Ji, Andrew L.; Andersson, Alma; Larsson, Ludvig; Stakenborg, Nathalie; Boeckxstaens, Guy; Khavari, Paul; Zou, James; Lundeberg, Joakim; Maaskola, Jonas
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The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
err2021-10-14
err39
errOAAI
errKim, Daniel S.; Risca, Viviana I.; Reynolds, David L.; Chappell, James; Rubin, Adam J.; Jung, Namyoung; Donohue, Laura K. H.; Lopez-Pajares, Vanessa; Kathiria, Arwa; Shi, Minyi; Zhao, Zhixin; Deep, Harsh; Sharmin, Mahfuza; Rao, Deepti; Lin, Shin; Chang, Howard Y.; Snyder, Michael P.; Greenleaf, William J.; Kundaje, Anshul; Khavari, Paul A.
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