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S

Shankar Subramaniam

university of california, san diego

76H-index
363Paper Count
2.8WCitation Count
Published Papers 134
Publication Date
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LIPID MAPS: Powering discovery in lipidomics
errScience Signaling
IF6.6
err2026-05-05
err0
PREAI
errLauren Cockayne; Matthew J. Conroy; Chetin Baloglu; Eoin Fahy; Gerhard Hagn; Oswald Quehenberger; Aaron M. Armando; Gabriele Lombardi Bendoula; Jean-Marie Galano; Ángel Sánchez-Illana; Thierry Durand; Nadja Kampschulte; Paul D. Kennedy; Miguel Gijón; Hiroshi Tsugawa; Makoto Arita; Kirk Maxey; Meghan Truskowski; Ondrej Kuda; Shazia Khan; Natalie Z. M. Homer; Yuki Matsuzawa; Rosario Domingues; Peter J. Meikle; Corey Giles; Kevin Huynh; Robert C. Murphy; Zidan Wang; Yu Xia; Xue Li Guan; Kim Ekroos; Gerhard Liebisch; Alfred H. Merrill; Andrea F. Lopez-Clavijo; Dominic Campopiano; Craig E. Wheelock; Shankar Subramaniam; Robert Andrews; Laura Goracci; Zhixu Ni; Maria Fedorova; Simon Andrews; William Griffiths; Ruth Andrew; Edward A. Dennis; Valerie B. O’Donnell
errShare
errSave
Immunogenomic diversity of triple-negative breast cancers in obese and non-obese black and white women
errNPJ BREAST CANCER
IF7.6
err2025-11-12
err0
errOAAI
errHossain, Fokhrul; Danos, Denise; Zabaleta, Jovanny; Wu, Xiao-Cheng; Del Valle, Luis; Hicks, Chindo; Wu, Jiande; Tomsic, Jerneja; Neuhausen, Susan; Ding, Yuan Chun; Mukund, Kavitha; Mesrizadeh, Zahra; Subramaniam, Shankar; Ochoa, Augusto; Seewaldt, Victoria; Miele, Lucio
errShare
errSave
Author Correction: A universal language for finding mass spectrometry data patterns
errNature Methods
IF32.1
err2025-08-08
err0
errOAAI
errTito Damiani; Alan K. Jarmusch; Allegra T. Aron; Daniel Petras; Vanessa V. Phelan; Haoqi Nina Zhao; Wout Bittremieux; Deepa D. Acharya; Mohammed M. A. Ahmed; Anelize Bauermeister; Matthew J. Bertin; Paul D. Boudreau; Ricardo M. Borges; Benjamin P. Bowen; Christopher J. Brown; Fernanda O. Chagas; Kenneth D. Clevenger; Mario S. P. Correia; William J. Crandall; Max Crüsemann; Eoin Fahy; Oliver Fiehn; Neha Garg; William H. Gerwick; Jeffrey R. Gilbert; Daniel Globisch; Paulo Wender P. Gomes; Steffen Heuckeroth; C. Andrew James; Scott A. Jarmusch; Sarvar A. Kakhkhorov; Kyo Bin Kang; Nikolas Kessler; Roland D. Kersten; Hyunwoo Kim; Riley D. Kirk; Oliver Kohlbacher; Eftychia E. Kontou; Ken Liu; Itzel Lizama-Chamu; Gordon T. Luu; Tal Luzzatto Knaan; Helena Mannochio-Russo; Michael T. Marty; Yuki Matsuzawa; Andrew C. McAvoy; Laura-Isobel McCall; Osama G. Mohamed; Omri Nahor; Heiko Neuweger; Timo H. J. Niedermeyer; Kozo Nishida; Trent R. Northen; Kirsten E. Overdahl; Johannes Rainer; Raphael Reher; Elys Rodriguez; Timo T. Sachsenberg; Laura M. Sanchez; Robin Schmid; Cole Stevens; Shankar Subramaniam; Zhenyu Tian; Ashootosh Tripathi; Hiroshi Tsugawa; Justin J. J. van der Hooft; Andrea Vicini; Axel Walter; Tilmann Weber; Quanbo Xiong; Tao Xu; Tomáš Pluskal; Pieter C. Dorrestein; Mingxun Wang
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errSave
Computational models for the prediction of yields in the autothermal pyrolysis of biomass
errCHEMICAL ENGINEERING SCIENCE
IF4.3
err2025-06-01
err0
PREAI
errNagawkar, Barlev R.; Subramaniam, Shankar; Brown, Robert C.; Passalacqua, Alberto
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errSave
Topological Data Analysis Reveals a Subgroup of Luminal B Breast Cancer
errIEEE Open Journal of Engineering in Medicine and Biology
IF2.9
err2025-01-01
err0
errOAAI
errZahra Rostami; David Fooshee; Gunnar Carlsson; Shankar Subramaniam
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errSave
Modeling enzyme competition in eicosanoid metabolism in macrophage cells using a cybernetic framework
errJOURNAL OF LIPID RESEARCH
IF4.1
err2024-12-01
err0
PREAI
errKhanum, Sana; Gupta, Shakti; Maurya, Mano R.; Raja, Rubesh; Aboulmouna, Lina; Subramaniam, Shankar; Ramkrishna, Doraiswami
errShare
errSave
Publisher Correction: Generation of 'semi-guided' cortical organoids with complex neural oscillations (Vol 19, 2712, 2024)
errNATURE PROTOCOLS
IF16
err2024-10-15
err0
errOAAI
errFitzgerald, Michael Q.; Chu, Tiffany; Puppo, Francesca; Blanch, Rebeca; Chillon, Miguel; Subramaniam, Shankar; Muotri, Alysson R.
errShare
errSave
Impact of genetic ancestry in triple-negative breast cancer subtypes
errCANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
IF3.4
err2024-09-21
err1
PREAI
errMesrizadeh, Zahra; Mukund, Kavitha; Hossain, Fokrul; Zabaleta, Jovanny; Danos, Denise; De Valle, Luis; Wu, Xiao-Cheng; Hicks, Chindo; Ochoa, Augusto; Miele, Lucio; Seewaldt, Victoria L.; Subramaniam, Shankar
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errSave
A study on the scale dependence of mixing indices for Eulerian multiphase models
errAICHE JOURNAL
IF4
err2024-08-22
err2
errOAAI
errNagawkar, Barlev R.; Passalacqua, Alberto; Subramaniam, Shankar
errShare
errSave
Generation of 'semi-guided' cortical organoids with complex neural oscillations
errNATURE PROTOCOLS
IF16
err2024-05-03
err2
errOAAI
errFitzgerald, Michael Q.; Chu, Tiffany; Puppo, Francesca; Blanch, Rebeca; Chillon, Miguel; Subramaniam, Shankar; Muotri, Alysson R.
errShare
errSave
The molecular landscape of injury-induced mammary epithelial cell fate switching
errCANCER RESEARCH
IF16.6
err2024-04-05
err0
PREAI
errMartin, Queralt Vallmajo; Lytle, Nikki K.; Murali, Divya; Srinivasan, Sumana; Ma, Zhibo; Mukund, Kavitha; Dravis, Christopher; Zamora, Liliana; Peterson, Ana; Khramtsova, Galina; Olopade, Funmi; Subramaniam, Shankar; Wahl, Geoffrey M.
errShare
errSave
Cell marker-based classification of TNBC subtypes and patient outcomes
errCANCER RESEARCH
IF16.6
err2024-04-05
err0
PREAI
errMesrizadeh, Zahra; Mukund, Kavitha; Hossain, Fokrul; Zabaleta, Jovanny; Danos, Denise; Del Valle, Luis; Wu, Xiao-Cheng; Hicks, Chindo; Ding, Yuan Chun; Ochoa, Augusto; Miele, Lucio; Seewaldt, Victoria L.; Subramaniam, Shankar
errShare
errSave
The molecular landscape of injury-induced mammary epithelial cell fate switching
errCANCER RESEARCH
IF16.6
err2024-02-01
err0
PREAI
errVallmajo-Martin, Queralt; Lytle, Nikki K.; Murali, Divya; Srinivasan, Sumana; Ma, Zhibo; Mukund, Kavitha; Dravis, Christopher; Zamora, Liliana; Peterson, Ana; Khramtsova, Galina; Olopade, Funmi; Subramaniam, Shankar; Wahl, Geoffrey M.
errShare
errSave
Single- cell RNA sequencing unveils unique transcriptomic signatures of endothelial cells and role of ENO1 in response to disturbed flow
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-01-23
err12
errOAAI
errChen, Li- Jing; Li, Julie Yi- Shuan; Nguyen, Phu; He, Ming; Chen, Zhen Bouman; Subramaniam, Shankar; Shyy, John Y. - J.; Chien, Shu
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errSave
Modeling transcriptional regulation of the cell cycle using a novel cybernetic-inspired approach
errBIOPHYSICAL JOURNAL
IF3.1
err2024-01-01
err1
errOAAI
errRaja, Rubesh; Khanum, Sana; Aboulmouna, Lina; Maurya, Mano R.; Gupta, Shakti; Subramaniam, Shankar; Ramkrishna, Doraiswami
errShare
errSave
Biliary atresia is associated with polygenic susceptibility in ciliogenesis and planar polarity effector genes
errJOURNAL OF HEPATOLOGY
IF33
err2023-12-01
err10
errOAAI
errGlessner, Joseph T.; Ningappa, Mylarappa B.; Ngo, Kim A.; Zahid, Maliha; So, Juhoon; Higgs, Brandon W.; Sleiman, Patrick M. A.; Narayanan, Tejaswini; Ranganathan, Sarangarajan; March, Michael; Prasadan, Krishna; Vaccaro, Courtney; Reyes-Mugica, Miguel; Velazquez, Jeremy; Salgado, Claudia M.; Ebrahimkhani, Mo R.; Schmitt, Lori; Rajasundaram, Dhivyaa; Paul, Morgan; Pellegrino, Renata; Gittes, George K.; Li, Dong; Wang, Xiang; Billings, Jonathan; Squires, Robert; Ashokkumar, Chethan; Sharif, Khalid; Kelly, Deirdre; Dhawan, Anil; Horslen, Simon; Lo, Cecilia W.; Shin, Donghun; Subramaniam, Shankar; Hakonarson, Hakon; Sindhi, Rakesh
errShare
errSave
MetGENE: gene-centric metabolomics information retrieval tool
errGIGASCIENCE
IF3.9
err2023-11-20
err0
errOAAI
errSrinivasan, Sumana; Maurya, Mano R.; Ramachandran, Srinivasan; Fahy, Eoin; Subramaniam, Shankar
errShare
errSave
Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease
errMOLECULAR BRAIN
IF2.9
err2023-11-03
err0
errOAAI
errValdes, Phoebe; Henry, Kenneth W.; Fitzgerald, Michael Q.; Muralidharan, Koushik; Caldwell, Andrew B.; Ramachandran, Srinivasan; Goldstein, Lawrence S. B.; Mobley, William C.; Galasko, Douglas R.; Subramaniam, Shankar
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errSave
LIPID MAPS: update to databases and tools for the lipidomics community
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-10-19
err47
errOAAI
errConroy, Matthew J.; Andrews, Robert M.; Andrews, Simon; Cockayne, Lauren; Dennis, Edward A.; Fahy, Eoin; Gaud, Caroline; Griffiths, William J.; Jukes, Geoff; Kolchin, Maksim; Mendivelso, Karla; Lopez-Clavijo, Andrea F.; Ready, Caroline; Subramaniam, Shankar; O'Donnell, Valerie B.
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errSave
The Janus face of proliferating plasmablasts in dengue and COVID-19 infections
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2023-08-11
err0
errOAAI
errNayak, Priya; Mukund, Kavitha; Subramaniam, Shankar
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
F
Frank J. Gonzalez
H-index: 191 · Papers: 1.7K
H
Håkon Håkonarson
H-index: 177 · Papers: 1.5K
T
Tony Hunter
H-index: 173 · Papers: 652
C
Christopher K. Glass
H-index: 170 · Papers: 569
M
Michael G. Rosenfeld
H-index: 169 · Papers: 491
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