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Aris Katzourakis

university of oxford

45H-index
147Paper Count
8.4KCitation Count
Published Papers 62
Publication Date
HI-FEVER: a Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements
err2025-12-01
err0
errOAAI
errMunoz-Baena, Laura; Harding, Emma F.; Nino Barreat, Jose Gabriel; Kinsella, Cormac M.; Katzourakis, Aris
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Endogenous viral elements in termite genomes reveal extensive diversity of deltaviruses and provide insights into their origins
err2025-09-08
err0
errOAAI
errJose Gabriel Nino Barreat; Emma F. Harding; Anselmo Jiro Kamada; Aris Katzourakis
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Independent SAGE as an example of effective public dialogue on scientific research
err2024-12-12
err0
PREAI
errGreenhalgh, Trisha; Costello, Anthony; Cruickshank, Sheena; Griffin, Stephen; Katzourakis, Aris; Lee, Lennard; Mckee, Martin; Michie, Susan; Pagel, Christina; Reicher, Stephen; Roberts, Alice; Robertson, Duncan; Salisbury, Helen; Yates, Kit; Independent SAGE
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Revisiting the origins of the Sobemovirus genus: A case for ancient origins of plant viruses
err2024-01-11
err1
errOAAI
errGhafari, Mahan; Somera, Merike; Sarmiento, Cecilia; Niehl, Annette; Hebrard, Eugenie; Tsoleridis, Theocharis; Ball, Jonathan; Moury, Benoit; Lemey, Philippe; Katzourakis, Aris; Fargette, Denis
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Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance
err2023-09-22
err1
errOAAI
errFrancisco, Ngiambudulu M.; van Wyk, Stephanie; Moir, Monika; San, James Emmanuel; Sebastiao, Cruz S.; Tegally, Houriiyah; Xavier, Joicymara; Maharaj, Akhil; Neto, Zoraima; Afonso, Pedro; Jandondo, Domingos; Paixao, Joana; Miranda, Julio; David, Kumbelembe; Ingles, Luzia; Pereira, Amilton; Paulo, Agostinho; Carralero, Raisa Rivas; Freitas, Helga Reis; Mufinda, Franco; Lutucuta, Silvia; Ghafari, Mahan; Giovanetti, Marta; Giandhari, Jennifer; Pillay, Sureshnee; Naidoo, Yeshnee; Singh, Lavanya; Tshiabuila, Derek; Martin, Darren Patrick; Chabuka, Lucious; Choga, Wonderful; Wanjohi, Dorcas; Mwangi, Sarah; Pillay, Yusasha; Kebede, Yenew; Shumba, Edwin; Ondoa, Pascale; Baxter, Cheryl; Wilkinson, Eduan; Tessema, Sofonias Kifle; Katzourakis, Aris; Lessells, Richard; de Oliveira, Tulio; Morais, Joana
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A billion years arms-race between viruses, virophages, and eukaryotes
err2023-06-26
err8
errOAAI
errBarreat, Jose Gabriel Nino; Katzourakis, Aris
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The evolution of SARS-CoV-2
err2023-04-05
err427
errOAAI
errMarkov, Peter V.; Ghafari, Mahan; Beer, Martin; Lythgoe, Katrina; Simmonds, Peter; Stilianakis, Nikolaos I.; Katzourakis, Aris
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A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data
err2022-05-31
err6
errOAAI
errGhafari, Mahan; Watson, Oliver J.; Karlinsky, Ariel; Ferretti, Luca; Katzourakis, Aris
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Antigenic evolution will lead to new SARS-CoV-2 variants with unpredictable severity
err2022-03-14
err86
errOAAI
errMarkov, Peter, V; Katzourakis, Aris; Stilianakis, Nikolaos, I
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Paleovirology of the DNA viruses of eukaryotes
err2022-03-01
err18
errOAAI
errBarreat, Jose Gabriel Nino; Katzourakis, Aris
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COVID-19: endemic doesn't mean harmless
errNATURE
IF48.5
err2022-01-24
err83
PREAI
errKatzourakis, Aris
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Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza
err2022-01-17
err34
errOAAI
errGhafari, Mahan; du Plessis, Louis; Raghwani, Jayna; Bhatt, Samir; Xu, Bo; Pybus, Oliver G.; Katzourakis, Aris
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Vaccinating adolescents against SARS-CoV-2 in England: a risk-benefit analysis
err2021-11-01
err30
errOAAI
errGurdasani, Deepti; Bhatt, Samir; Costello, Anthony; Denaxas, Spiros; Flaxman, Seth; Greenhalgh, Trisha; Griffin, Stephen; Hyde, Zoe; Katzourakis, Aris; McKee, Martin; Michie, Susan; Ratmann, Oliver; Reicher, Stephen; Scally, Gabriel; Tomlinson, Christopher; Yates, Christian; Ziauddeen, Hisham; Pagel, Christina
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A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses
err2021-11-01
err25
errOAAI
errGhafari, Mahan; Simmonds, Peter; Pybus, Oliver G.; Katzourakis, Aris
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Upregulation of Human Endogenous Retroviruses in Bronchoalveolar Lavage Fluid of COVID-19 Patients
err2021-10-31
err30
errOAAI
errKitsou, Konstantina; Kotanidou, Anastasia; Paraskevis, Dimitrios; Karamitros, Timokratis; Katzourakis, Aris; Tedder, Richard; Hurst, Tara; Sapounas, Spyros; Kotsinas, Athanassios; Gorgoulis, Vassilis; Spoulou, Vana; Tsiodras, Sotirios; Lagiou, Pagona; Magiorkinis, Gkikas
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Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran
err2021-09-01
err17
errOAAI
errGhafari, Mahan; Hejazi, Bardia; Karshenas, Arman; Dascalu, Stefan; Kadvidar, Alireza; Khosravi, Mohammad A.; Abbasalipour, Maryam; Heydari, Majid; Zeinali, Sirous; Ferretti, Luca; Ledda, Alice; Katzourakis, Aris
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Mass infection is not an option: we must do more to protect our young
errLANCET
IF88.5
err2021-07-01
err17
errOAAI
errGurdasani, Deepti; Drury, John; Greenhalgh, Trisha; Griffin, Stephen; Haque, Zubaida; Hyde, Zoe; Katzourakis, Aris; Mckee, Martin; Michie, Susan; Pagel, Christina; Reicher, Stephen; Roberts, Alice; West, Robert; Yates, Christian; Ziauddeen, Hisham
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