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Targeted and whole-genome sequencing for drug resistance and genetic relatedness inference of rifampicin-resistant Mycobacterium tuberculosis: an in-depth comparison Fuertes, Miguel de Diego; Conceicao, Emilyn Costa; Wells, Felicia; Rennie, Vincent; Heupink, Tim; Churchyard, Gavin; Ndebele, Felix; Van Dijk, Anneke Van der Spoel; Fanampe, Boitumelo; Charalombous, Salome; Ogunbayo, Emmanuel Ayodeji; Rojas, Wilma Quispe; Warren, Rob M.; Van Rie, Annelies; Dippenaar, Anzaan Share Save
70% ethanol preserves mycobacterial RNA from cultures more efficiently than GTC-TCEP Krausser, Lena; Van Dyck-Lippens, Magalie; Balde, Ramata; Reenaers, Rabab; Al Mubarak, Reem; Rigouts, Leen; Walter, Nicholas D.; Voskuil, Martin I.; Van Rie, Annelies; de Jong, Bouke C.; Braet, Sofie M. Share Save
Phenotypic and genotypic resistance to bedaquiline in patients with multi-drug-resistant tuberculosis-experiences from Armenia Ardizzoni, E.; Mulders, W.; Fuertes, M. De Diego; Hayrapetyan, A.; Mirzoyan, A.; Faqirzai, J.; Khachatryan, N.; Oganezova, I.; Varaine, F.; Bastard, M.; Graulus, P.; Meehan, C. J.; Rigouts, L.; de Jong, B. C.; Decroo, T.; Hewison, C.; Van Rie, A. Share Save
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Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach Barilar, Ivan; Battaglia, Simone; Borroni, Emanuele; Brandao, Angela Pires; Brankin, Alice; Cabibbe, Andrea Maurizio; Carter, Joshua; Chetty, Darren; Cirillo, Daniela Maria; Claxton, Pauline; Clifton, David A.; Cohen, Ted; Coronel, Jorge; Crook, Derrick W.; Dreyer, Viola; Earle, Sarah G.; Escuyer, Vincent; Ferrazoli, Lucilaine; Fowler, Philip W.; Gao, George Fu; Gardy, Jennifer; Gharbia, Saheer; Ghisi, Kelen Teixeira; Ghodousi, Arash; Gibertoni Cruz, Ana Luiza; Grandjean, Louis; Grazian, Clara; Groenheit, Ramona; Guthrie, Jennifer L.; He, Wencong; Hoffmann, Harald; Hoosdally, Sarah J.; Hunt, Martin; Iqbal, Zamin; Ismail, Nazir Ahmed; Jarrett, Lisa; Joseph, Lavania; Jou, Ruwen; Kambli, Priti; Khot, Rukhsar; Knaggs, Jeff; Koch, Anastasia; Kohlerschmidt, Donna; Kouchaki, Samaneh; Lachapelle, Alexander S.; Lalvani, Ajit; Lapierre, Simon Grandjean; Laurenson, Ian F.; Letcher, Brice; Lin, Wan-Hsuan; Liu, Chunfa; Liu, Dongxin; Malone, Kerri M.; Mandal, Ayan; Mansjoe, Mikael; Calisto Matias, Daniela Vicente Lucena; Meintjes, Graeme; de Freitas Mendes, Flavia; Merker, Matthias; Mihalic, Marina; Millard, James; Miotto, Paolo; Mistry, Nerges; Moore, David; Musser, Kimberlee A.; Ngcamu, Dumisani; Nhung, Hoang Ngoc; Niemann, Stefan; Nilgiriwala, Kayzad Soli; Nimmo, Camus; O'Donnell, Max; Okozi, Nana; Oliveira, Rosangela Siqueira; Omar, Shaheed Vally; Paton, Nicholas; Peto, Timothy E. A.; Pinhata, Juliana Maira Watanabe; Plesnik, Sara; Puyen, Zully M.; Rabodoarivelo, Marie Sylvianne; Rakotosamimanana, Niaina; Rancoita, Paola M. V.; Rathod, Priti; Robinson, Esther Rhiannon; Rodger, Gillian; Rodrigues, Camilla; Rodwell, Timothy C.; Roohi, Aysha; Santos-Lazaro, David; Shah, Sanchi; Smith, Grace; Kohl, Thomas Andreas; Solano, Walter; Spitaleri, Andrea; Steyn, Adrie J. C.; Supply, Philip; Surve, Utkarsha; Tahseen, Sabira; Thuong, Nguyen Thuy Thuong; Thwaites, Guy; Todt, Katharina; Trovato, Alberto; Utpatel, Christian; Van Rie, Annelies; Vijay, Srinivasan; Walker, A. Sarah; Walker, Timothy M.; Warren, Robin; Werngren, Jim; Wijkander, Maria; Wilkinson, Robert J.; Wilson, Daniel J.; Wintringer, Penelope; Xiao, Yu-Xin; Yang, Yang; Yanlin, Zhao; Yao, Shen-Yuan; Zhu, Baoli Share Save
Integrating Molecular Diagnostics and GIS Mapping: A Multidisciplinary Approach to Understanding Tuberculosis Disease Dynamics in South Africa Using Xpert MTB/RIF Scott, Lesley Erica; Shapiro, Anne Nicole; Da Silva, Manuel Pedro; Tsoka, Jonathan; Jacobson, Karen Rita; Emch, Michael; Moultrie, Harry; Jenkins, Helen Elizabeth; Moore, David; Van Rie, Annelies; Stevens, Wendy Susan Share Save
Microfluidic Capture of Mycobacterium tuberculosis from Clinical Samples for Culture-Free Whole-Genome Sequencing Ismail, Nabila; Dippenaar, Anzaan; Morgan, George; Grobbelaar, Melanie; Wells, Felicia; Caffry, Jessica; Morais, Cristiana; Gizynski, Krzysztof; McGurk, David; Boada, Eduardo; Murton, Heather; Warren, Robin M.; Van Rie, Annelies Share Save
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Balancing access to BPaLM regimens and risk of resistance Van Rie, Annelies; Walker, Timothy; de Jong, Bouke; Rupasinghe, Praharshinie; Riviere, Emmanuel; Dartois, Veronique; Sonnenkalb, Lindsay; Machado, Diana; Gagneux, Sebastien; Supply, Philip; Dreyer, Viola; Niemann, Stefan; Goig, Galo; Meehan, Conor; Tagliani, Elisa; Cirillo, Daniela Maria Share Save
Variants in Bedaquiline-Candidate-Resistance Genes: Prevalence in Bedaquiline-Naive Patients, Effect on MIC, and Association with Mycobacterium tuberculosis Lineage Riviere, Emmanuel; Verboven, Lennert; Dippenaar, Anzaan; Goossens, Sander; De Vos, Elise; Streicher, Elizabeth; Cuypers, Bart; Laukens, Kris; Ben-Rached, Fathia; Rodwell, Timothy C.; Pain, Arnab; Warren, Robin M.; Heupink, Tim H.; Van Rie, Annelies Share Save
Transmission, distribution and drug resistance-conferring mutations of extensively drug-resistant tuberculosis in the Western Cape Province, South Africa Oostvogels, Selien; Ley, Serej D.; Heupink, Tim H.; Dippenaar, Anzaan; Streicher, Elizabeth M.; De Vos, Elise; Meehan, Conor J.; Dheda, Keertan; Warren, Rob; Van Rie, Annelies Share Save
Updating the approaches to define susceptibility and resistance to anti-tuberculosis agents: implications for diagnosis and treatment Georghiou, Sophia B.; Rodwell, Timothy C.; Korobitsyn, Alexei; Abbadi, Said H.; Ajbani, Kanchan; Alffenaar, Jan-Willem; Alland, David; Alvarez, Nataly; Andres, Sonke; Ardizzoni, Elisa; Aubry, Alexandra; Baldan, Rossella; Ballif, Marie; Barilar, Ivan; Bottger, Erik C.; Chakravorty, Soumitesh; Claxton, Pauline M.; Cirillo, Daniela M.; Comas, Inaki; Coulter, Chris; Denkinger, Claudia M.; Derendinger, Brigitta; Desmond, Edward P.; de Steenwinkel, Jurriaan E. M.; Dheda, Keertan; Diacon, Andreas H.; Dolinger, David L.; Dooley, Kelly E.; Egger, Matthias; Farhat, Maha R.; Fattorini, Lanfranco; Finci, Iris; Le Ray, Laure Fournier; Furio, Victoria; Groenheit, Ramona; Gumbo, Tawanda; Heysell, Scott K.; Hillemann, Doris; Hoffmann, Harald; Hsueh, Po-Ren; Hu, Yi; Huang, Hairong; Hussain, Alamdar; Ismail, Farzana; Izumi, Kiyohiko; Jagielski, Tomasz; Johnson, John L.; Kambli, Priti; Kaniga, Kone; Karunaratne, G. H. R. Eranga; Sharma, Meenu Kaushal; Keller, Peter M.; Kelly, Ellis C.; Kholina, Margarita; Kohli, Mikashmi; Kranzer, Katharina; Laurenson, Ian F.; Limberis, Jason; Lin, S-Y Grace; Liu, Yongge; Lopez-Gavin, Alexandre; Lyander, Anna; Machado, Diana; Martinez, Elena; Masood, Faisal; Mitarai, Satoshi; Mvelase, Nomonde R.; Niemann, Stefan; Nikolayevskyy, Vladyslav; Maurer, Florian P.; Merker, Matthias; Miotto, Paolo; Omar, Shaheed, V; Otto-Knapp, Ralf; Palaci, Moises; Palacios Gutierrez, Juan Jose; Peacock, Sharon J.; Peloquin, Charles A.; Perera, Jennifer; Pierre-Audigier, Catherine; Pholwat, Suporn; Posey, James E.; Prammananan, Therdsak; Rigouts, Leen; Robledo, Jaime; Rockwood, Neesha; Rodrigues, Camilla; Salfinger, Max; Schechter, Marcos C.; Seifert, Marva; Sengstake, Sarah; Shinnick, Thomas; Shubladze, Natalia; Sintchenko, Vitali; Sirgel, Frederick; Somasundaram, Sulochana; Sterling, Timothy R.; Spitaleri, Andrea; Streicher, Elizabeth; Supply, Philip; Svensson, Erik; Tagliani, Elisa; Tahseen, Sabira; Takaki, Akiko; Theron, Grant; Torrea, Gabriela; Van Deun, Armand; Van Rie, Annelies; van Soolingen, Dick; Vargas, Roger, Jr.; Venter, Amour; Veziris, Nicolas; Villellas, Cristina; Viveiros, Miguel; Warren, Robin; Wen, Shu'an; Werngren, Jim; Wilkinson, Robert J.; Yang, Caie; Zhang, Tingting; Zimenkov, Danila; Ismail, Nazir; Schon, Thomas; Koser, Claudio U.; Ehsani, Soudeh; van Ingen, Jakko; Yilmaz, F. Ferda Share Save
A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis Verboven, Lennert; Calders, Toon; Callens, Steven; Black, John; Maartens, Gary; Dooley, Kelly E.; Potgieter, Samantha; Warren, Robin M.; Laukens, Kris; Van Rie, Annelies Share Save
Nanopore Sequencing for Mycobacterium tuberculosis: a Critical Review of the Literature, New Developments, and Future Opportunities Dippenaar, Anzaan; Goossens, Sander N.; Grobbelaar, Melanie; Oostvogels, Selien; Cuypers, Bart; Laukens, Kris; Meehan, Conor J.; Warren, Robin M.; van Rie, Annelies Share Save
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