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Marcus J. Claesson

university college cork

54H-index
148Paper Count
1.9WCitation Count
Published Papers 72
Publication Date
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Functional impact of dietary chitin upon Listeria monocytogenes pathogenesis
errFood Microbiology
IF4.6
err2026-04-10
err0
errOAAI
errMonica Cazzaniga; Peiyao Shen; Darja Flegar; Kardokh Kaka Bra; Miguel Villoria Recio; Mohammed Bahey-El-Din; Cara Hueston; Marcus J. Claesson; Silvia Melgar; Cormac G.M. Gahan
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The gut microbiome associated with LGI1-antibody encephalitis
errEpilepsia
IF6.6
err2025-08-06
err0
errOAAI
errEdmund Gilbert; Sophie Binks; Valentina Damato; Christopher Uy; Paula Colmenero; Mark Kelly; Mohamed Ibrahim Khalil; Marcus O'Brien; Marcus J Claesson; John F. Cryan; Norman Delanty; Sarosh R. Irani; Gianpiero L. Cavalleri
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errSave
Combining mucosal microbiome and host multi-omics data shows prognostic potential in paediatric ulcerative colitis
errNature Communications
IF15.7
err2025-08-04
err0
errOAAI
errMaria Kulecka; Jill O’Sullivan; Rachel Fitzgerald; Ana Velikonja; Chloe E. Huseyin; Emilio J. Laserna-Mendieta; Patricia Ruiz-Limón; Julia Eckenberger; Miriam Vidal-Marín; Bastian-Alexander Truppel; Raminder Singh; Sandhia Naik; Nicholas M. Croft; Andriy Temko; Aldert Zomer; John MacSharry; Silvia Melgar; Protima Deb; Ian R. Sanderson; Marcus J. Claesson
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errSave
Gut microbiota development across the lifespan: Disease links and health-promoting interventions
errJOURNAL OF INTERNAL MEDICINE
IF9.2
err2025-04-24
err0
errOAAI
errSchoultz, Ida; Claesson, Marcus J.; Dominguez-Bello, Maria Gloria; Hallenius, Frida Fak; Konturek, Peter; Korpela, Katri; Laursen, Martin Frederik; Penders, John; Roager, H.; Ohman, Lena
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errSave
Comparing Campylobacter jejuni to three other enteric pathogens in OligoMM12 mice reveals pathogen-specific host and microbiota responses
errGUT MICROBES
IF11
err2025-01-21
err0
errOAAI
errMathias K.-M. Herzog; Audrey Peters; Nizar Shayya; Monica Cazzaniga; Kardokh Kaka Bra; Trisha Arora; Manja Barthel; Ersin Gül; Luca Maurer; Patrick Kiefer; Philipp Christen; Katharina Endhardt; Julia A. Vorholt; Gad Frankel; Markus M. Heimesaat; Stefan Bereswill; Cormac G. M. Gahan; Marcus J. Claesson; Xavier Domingo-Almenara; Wolf-Dietrich Hardt
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errSave
Host-microbe multi-omics and succinotype profiling have prognostic value for future relapse in patients with inflammatory bowel disease
errGUT MICROBES
IF11
err2025-01-15
err0
errOAAI
errJill O’Sullivan; Shriram Patel; Gabriel E. Leventhal; Rachel S. Fitzgerald; Emilio J. Laserna-Mendieta; Chloe E. Huseyin; Nina Konstantinidou; Erica Rutherford; Aonghus Lavelle; Karim Dabbagh; Todd Z. DeSantis; Fergus Shanahan; Andriy Temko; Shoko Iwai; Marcus J. Claesson
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Examining the healthy human microbiome concept
errNATURE REVIEWS MICROBIOLOGY
IF103.3
err2024-10-23
err1
PREAI
errJoos, Raphaela; Boucher, Katy; Lavelle, Aonghus; Arumugam, Manimozhiyan; Blaser, Martin J.; Claesson, Marcus J.; Clarke, Gerard; Cotter, Paul D.; De Sordi, Luisa; Dominguez-Bello, Maria G.; Dutilh, Bas E.; Ehrlich, Stanislav D.; Ghosh, Tarini Shankar; Hill, Colin; Junot, Christophe; Lahti, Leo; Lawley, Trevor D.; Licht, Tine R.; Maguin, Emmanuelle; Makhalanyane, Thulani P.; Marchesi, Julian R.; Matthijnssens, Jelle; Raes, Jeroen; Ravel, Jacques; Salonen, Anne; Scanlan, Pauline D.; Shkoporov, Andrey; Stanton, Catherine; Thiele, Ines; Tolstoy, Igor; Walter, Jens; Yang, Bo; Yutin, Natalia; Zhernakova, Alexandra; Zwart, Hub; Dore, Joel D.; Ross, R. Paul
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The developing pig respiratory microbiome harbors strains antagonistic to common respiratory pathogens
errMSYSTEMS
IF4.6
err2024-10-22
err0
errOAAI
errVlasblom, Abel A.; Duim, Birgitta; Patel, Shriram; Luiken, Roosmarijn E. C.; Crespo-Piazuelo, Daniel; Eckenberger, Julia; Huseyin, Chloe E.; Lawlor, Peadar G.; Elend, Christian; Wagenaar, Jaap A.; Claesson, Marcus J.; Zomer, Aldert L.
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Editorial: Microbiome and machine learning, volume II
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2024-10-15
err0
errOAAI
errD'Elia, Domenica; Zomer, Aldert; Indias, Isabel Moreno; Bongcam-Rudloff, Erik; Bertelsen, Randi Jacobsen; Claesson, Marcus Joakim
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errSave
A toolbox of machine learning software to support microbiome analysis
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-11-22
err3
errOAAI
errMarcos-Zambrano, Laura Judith; Lopez-Molina, Victor Manuel; Bakir-Gungor, Burcu; Frohme, Marcus; Karaduzovic-Hadziabdic, Kanita; Klammsteiner, Thomas; Ibrahimi, Eliana; Lahti, Leo; Loncar-Turukalo, Tatjana; Dhamo, Xhilda; Simeon, Andrea; Nechyporenko, Alina; Pio, Gianvito; Przymus, Piotr; Sampri, Alexia; Trajkovik, Vladimir; Lacruz-Pleguezuelos, Blanca; Aasmets, Oliver; Araujo, Ricardo; Anagnostopoulos, Ioannis; Aydemir, Onder; Berland, Magali; Calle, M. Luz; Ceci, Michelangelo; Duman, Hatice; Gundogdu, Aycan; Havulinna, Aki S.; Kaka Bra, Kardokh Hama Najib; Kalluci, Eglantina; Karav, Sercan; Lode, Daniel; Lopes, Marta B.; May, Patrick; Nap, Bram; Nedyalkova, Miroslava; Paciencia, Ines; Pasic, Lejla; Pujolassos, Meritxell; Shigdel, Rajesh; Susin, Antonio; Thiele, Ines; Truica, Ciprian-Octavian; Wilmes, Paul; Yilmaz, Ercument; Yousef, Malik; Claesson, Marcus Joakim; Truu, Jaak; Carrillo de Santa Pau, Enrique
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Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-09-25
err13
errOAAI
errD'Elia, Domenica; Truu, Jaak; Lahti, Leo; Berland, Magali; Papoutsoglou, Georgios; Ceci, Michelangelo; Zomer, Aldert; Lopes, Marta B.; Ibrahimi, Eliana; Gruca, Aleksandra; Nechyporenko, Alina; Frohme, Marcus; Klammsteiner, Thomas; Pau, Enrique Carrillo-de Santa; Marcos-Zambrano, Laura Judith; Hron, Karel; Pio, Gianvito; Simeon, Andrea; Suharoschi, Ramona; Moreno-Indias, Isabel; Temko, Andriy; Nedyalkova, Miroslava; Apostol, Elena-Simona; Truica, Ciprian-Octavian; Shigdel, Rajesh; Telalovic, Jasminka Hasic; Bongcam-Rudloff, Erik; Przymus, Piotr; Jordamovic, Naida Babic; Falquet, Laurent; Tarazona, Sonia; Sampri, Alexia; Isola, Gaetano; Perez-Serrano, David; Trajkovik, Vladimir; Klucar, Lubos; Loncar-Turukalo, Tatjana; Havulinna, Aki S.; Jansen, Christian; Bertelsen, Randi J.; Claesson, Marcus Joakim
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Machine learning approaches in microbiome research: challenges and best practices
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-09-22
err30
errOAAI
errPapoutsoglou, Georgios; Tarazona, Sonia; Lopes, Marta B.; Klammsteiner, Thomas; Ibrahimi, Eliana; Eckenberger, Julia; Novielli, Pierfrancesco; Tonda, Alberto; Simeon, Andrea; Shigdel, Rajesh; Bereux, Stephane; Vitali, Giacomo; Tangaro, Sabina; Lahti, Leo; Temko, Andriy; Claesson, Marcus J.; Berland, Magali
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Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolome
errNPJ SCIENCE OF FOOD
IF7.8
err2023-08-16
err4
errOAAI
errWalsh, Liam H.; Walsh, Aaron M.; Garcia-Perez, Isabel; Crispie, Fiona; Costabile, Adele; Ellis, Richard; Finlayson, Jim; Finnegan, Laura A.; Claesson, Marcus J.; Holmes, Elaine; Cotter, Paul D.
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Microbial bile salt hydrolase activity influences gene expression profiles and gastrointestinal maturation in infant mice
errGUT MICROBES
IF11
err2022-11-24
err6
errOAAI
errNunez-Sanchez, Maria A.; Herisson, Florence M.; Keane, Jonathan M.; Garcia-Gonzalez, Natalia; Rossini, Valerio; Pinhiero, Jorge; Daly, Jack; Bustamante-Garrido, Milan; Hueston, Cara M.; Patel, Shriram; Canela, Nuria; Herrero, Pol; Claesson, Marcus J.; Melgar, Silvia; Nally, Ken; Caplice, Noel M.; Gahan, Cormac G. M.
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errSave
The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review
errSPORTS MEDICINE
IF9.4
err2022-11-18
err26
errOAAI
errO'Brien, Marcus T.; O'Sullivan, Orla; Claesson, Marcus J.; Cotter, Paul D.
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Biopsy bacterial signature can predict patient tissue malignancy (vol 11, 18535, 2021)
errSCIENTIFIC REPORTS
IF3.9
err2022-11-15
err0
errOAAI
errHogan, Glenn; Eckenberger, Julia; Narayanen, Neegam; Walker, Sidney P.; Claesson, Marcus J.; Corrigan, Mark; O'Hanlon, Deirdre; Tangney, Mark
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errSave
Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2022-10-14
err4
errOAAI
errRavichandar, Jayamary Divya; Rutherford, Erica; Chow, Cheryl-Emiliane T.; Han, Andrew; Yamamoto, Mitsuko Lynn; Narayan, Nicole; Kaplan, Gilaad G.; Beck, Paul L.; Claesson, Marcus J.; Dabbagh, Karim; Iwai, Shoko; DeSantis, Todd Z.
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Interactions between Medications and the Gut Microbiome in Inflammatory Bowel Disease
errMICROORGANISMS
IF4.2
err2022-10-04
err5
errOAAI
errEckenberger, Julia; Butler, James C.; Bernstein, Charles N.; Shanahan, Fergus; Claesson, Marcus J.
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Improved gut microbiome recovery following drug therapy is linked to abundance and replication of probiotic strains
errGUT MICROBES
IF11
err2022-08-02
err15
errOAAI
errFitzGerald, Jamie; Patel, Shriram; Eckenberger, Julia; Guillemard, Eric; Veiga, Patrick; Schafer, Florent; Walter, Jens; Claesson, Marcus J.; Derrien, Muriel
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Editorial: Microbiome and Machine Learning
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2022-07-05
err1
errOAAI
errMoreno-Indias, Isabel; Zomer, Aldert L.; Gomez-Cabrero, David; Claesson, Marcus J.
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
W
Willem M. de Vos
H-index: 193 · Papers: 1.3K
J
Julian Parkhill
H-index: 177 · Papers: 1.1K
J
John F. Cryan
H-index: 162 · Papers: 1.3K
R
R. Paul Ross
H-index: 154 · Papers: 1.1K
C
Cezmi A. Akdiş
H-index: 153 · Papers: 1.0K
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