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Benjamin P. Howden

university of melbourne

76H-index
587Paper Count
2.1WCitation Count
Published Papers 300
Publication Date
Conserved CD4+ T cell staphylococcal and streptococcal epitopes enable broad-acting vaccines in mice
err2026-02-19
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PREAI
errJessica Braverman; Ian R. Monk; Adrianna M. Turner; Asolina Braun; Heran Zhang; Shanzou Chung; Claerwen M. Jones; Pirooz Zareie; Nicole L. La Gruta; Joanne Rimmer; Glen P. Carter; Benjamin P. Howden; Nancy Wang; Anthony W. Purcell; Timothy P. Stinear; Linda M. Wakim
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Integrated multi-omics reveals coordinated Staphylococcus aureus metabolic, iron transport, and stress responses to human serum
err2026-02-01
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PREAI
errMujchariyakul, Warasinee; Walsh, Calum J.; Giulieri, Stefano; Cramond, Cameron; Lecao, Kim-Anh; Stinear, Timothy P.; Howden, Benjamin P.; Guerillot, Romain; Hachani, Abderrahman
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Impact and cost-effectiveness of doxycycline post-exposure prophylaxis in Australian men who have sex with men
err2026-01-21
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errOAAI
errHao Lai; Jason J. Ong; Michael W. Traeger; Christopher K. Fairley; Benjamin P. Howden; Mark A. Stoové; Mingwang Shen; Lei Zhang
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Bringing tuberculosis genomics to the clinic: development and validation of a comprehensive pipeline to predict antimicrobial susceptibility from genomic data, accredited to ISO standards
err2025-12-22
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errOAAI
errKristy A Horan; Linda Viberg; Susan A Ballard; Maria Globan; Wytamma Wirth; Katherine Bond; Jessica R Webb; Thinley Dorji; Deborah A Williamson; Michelle L Sait; Ee Laine Tay; Justin T Denholm; Benjamin P Howden; Torsten Seemann; Norelle L Sherry
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Increased risk of antimicrobial resistance in patients with cirrhosis and hepatic encephalopathy using rifaximin
err2025-12-11
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errOAAI
errCheng-Hao Kuo; Glen P. Carter; Benjamin P. Howden; Tsai-Wei Huang; Zhujun Cao; Yee Hui Yeo; Chun-Ying Wu
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Quantifying plasmid movement in drug-resistant Shigella species using phylodynamic inference
err2025-12-01
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PREAI
errMuller, Nicola F.; Wick, Ryan R.; Judd, Louise M.; Williamson, Deborah A.; Bedford, Trevor; Howden, Benjamin P.; Duchene, Sebastian; Ingle, Danielle J.
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Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi
err2025-10-24
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errOAAI
errDanielle J. Ingle; Jane Hawkey; Martin Hunt; Zamin Iqbal; Jacqueline A. Keane; Ayorinde O. Afolayan; Niyaz Ahmed; Saadia Andleeb; Philip M. Ashton; Isaac I. Bogoch; Megan E. Carey; Marie Anne Chattaway; John A. Crump; Paula Diaz Guevara; Benjamin P. Howden; Hidemasa Izumiya; Jobin John Jacob; Louise M. Judd; Arti Kapil; Karen H. Keddy; Justin Y. Kim; Myron M. Levine; Masatomo Morita; Satheesh Nair; Sophie Octavia; Iruka N. Okeke; Precious E. Osadebamwen; Sadia Isfat Ara Rahman; Assaf Rokney; David A. Rasko; Varun Shamanna; Michael J. Sikorski; Anthony M. Smith; Gabriel T. Sunmonu; Kaitlin A. Tagg; Ryan R. Wick; Zoe A. Dyson; Kathryn E. Holt
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Genomic and epidemiological characteristics of Shigella boydii in Australia, 1991–2022
err2025-10-23
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errOAAI
errAaliya F Ibrahim; Danielle J Ingle; Jessica R Webb; Benjamin P Howden; Patiyan Andersson; Benjamin G Polkinghorne; Rose Wright; Kathryn Glass; Martyn D Kirk
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Invasive Streptococcus dysgalactiae subspecies equisimilis compared with Streptococcus pyogenes in Australia, 2011–23, and the emergence of a multi-continent stG62647 lineage: a retrospective clinical and genomic epidemiology study
err2025-10-07
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errOAAI
errOuli Xie; Leo Featherstone; An N T Nguyen; Andrew J Hayes; Miranda E Pitt; Stephanie Spring; Alice Liu; Gerry Tonkin-Hill; Ravindra Dotel; Neela Joshi Rai; Alexander Rofe; Sebastian Duchêne; Deborah C Holt; Louise M Judd; Lachlan J M Coin; Vicki L Krause; Matthew V N O’Sullivan; Robert W Baird; Katherine Bond; Benjamin P Howden; Tony M Korman; Bart J Currie; Mark R Davies; Steven Y C Tong
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Population structure and antimicrobial resistance of Corynebacterium diphtheriae in Victoria, Australia
err2025-10-01
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PREAI
errKumar, Lamali Sadeesh; Baines, Sarah L.; Hui, Kylie; Strachan, Janet; Sherry, Norelle L.; Howden, Benjamin P.
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Communicable diseases genomics network: promoting and harmonising pathogen genomics implementation for public health in Australia
err2025-09-22
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PREAI
errChantel Lin; Amy V. Jennison; Lex E.X. Leong; David J. Speers; Ella M. Meumann; Louise Cooley; Karina Kennedy; Alicia Arnott; David Winter; William Rawlinson; Jennifer Robson; Patrick Harris; Angela Donald; Torsten Seemann; Susan A. Ballard; Martyn Kirk; Vitali Sintchenko; Deborah A. Williamson; Benjamin P. Howden
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Autocycler: long-read consensus assembly for bacterial genomes
err2025-09-01
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errOAAI
errWick, Ryan R.; Howden, Benjamin P.; Stinear, Timothy P.
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Insights from expert elicitation: prioritising pathogens for genome sequencing for Australian public health response
err2025-08-25
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PREAI
errTehzeeb Zulfiqar; Angeline Ferdinand; Danielle Cribb; Patiyan Andersson; Alireza Zahedi; Kathryn Glass; Son Nghiem; Susan Trevenar; Nhung Mai; Benjamin P. Howden; Martyn D. Kirk
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Regulation of airway fumarate by host and pathogen promotes Staphylococcus aureus pneumonia
err2025-08-01
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errOAAI
errYing-Tsun Chen; Zihua Liu; Dario Fucich; Stefano G. Giulieri; Zhe Liu; Ridhima Wadhwa; Gustavo Rios; Henning Henschel; Nupur Tyagi; Françios A. B. Olivier; Ian R. Monk; Shivang S. Shah; Shwetha H. Sridhar; Marija Drikic; Colleen Bianco; Gaurav K. Lohia; Ayesha Z. Beg; Paul J. Planet; Ian A. Lewis; Robert Sebra; Ana Traven; Abderrahman Hachani; Timothy P. Stinear; Benjamin P. Howden; Jeffrey M. Boyd; Sebastian A. Riquelme; Chu Wang; Alice Prince; Tania Wong Fok Lung
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Global diversity and evolution of Salmonella enterica serovar Panama: a genomic epidemiology study
err2025-07-25
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errOAAI
errCaisey V Pulford; Blanca M Perez-Sepulveda; Danielle J Ingle; Rebecca J Bengtsson; Rebecca J Bennett; Ella V Rodwell; Maria Pardos de la Gandara; Charlotte E Chong; P Malaka De Silva; Magali Ravel; Véronique Guibert; Elisabeth Njamkepo; Neil Hall; Marie A Chattaway; Benjamin P Howden; Deborah A Williamson; Jay C D Hinton; François-Xavier Weill; Kate S Baker
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Selecting candidate Neisseria gonorrhoeae strains for oropharyngeal gonorrhoea human challenge: a genomics-based analysis of clinical isolates
err2025-07-10
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errOAAI
errEloise Williams; Soo Jen Low; Georgina L Pollock; Mona L Taouk; Jacqueline Prestedge; Benjamin P Howden; Eric P F Chow; Christopher K Fairley; Kate L Seib; James S McCarthy; Shivani Pasricha; Deborah A Williamson
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The impact of integrated genomic surveillance on non-typhoidal Salmonella infection in Australia: an ecological study
err2025-06-01
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errOAAI
errSon Nghiem; Nhung Mai; My Tran; Danielle M. Cribb; Liliana Bulfone; Patiyan Andersson; Alireza Zahedi; Tuyet Hoang; Tehzeeb Zulfiqar; Angeline Ferdinand; Katie Glass; Martyn D. Kirk; Vitali Sintchenko; Amy V. Jennison; Benjamin P. Howden; Emily Lancsar
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Trekking through the emergence of linezolid-resistant Enterococcus faecalis in Tasmania
err2025-05-06
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PREAI
errI-Ly Joanna Chua; Jia Qi Beh; Christopher H. Connor; Jessica Webb; Tara Anderson; Norelle Sherry; Louise Cooley; Benjamin Howden
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