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Automating candidate gene prioritization with large language models: from naive scoring to literature-grounded validation Khan, Taushif; Toufiq, Mohammed; Yurieva, Marina; Indrawattana, Nitaya; Jittmittraphap, Akanitt; Kosoltanapiwat, Nathamon; Pumirat, Pornpan; Sukphopetch, Passanesh; Vanaporn, Muthita; Palucka, Karolina; Kabeer, Basirudeen Syed Ahamed; Rinchai, Darawan; Chaussabel, Damien Share Save
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A data browsing application for accessing gene and module-level blood transcriptome profiles of healthy pregnant women from high- and low-resource settings Rinchai, Darawan; Brummaier, Tobias; Marr, Alexandra; Habib, Tanwir; Toufiq, Mohammed; Kino, Tomoshigue; Nosten, Francois; Al Khodor, Souhaila; Terranegra, Annalisa; Mcgready, Rose; Kabeer, Basirudeen Syed Ahamed; Chaussabel, Damien Share Save
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy Brummaier, Tobias; Rinchai, Darawan; Toufiq, Mohammed; Karim, Mohammed Y.; Habib, Tanwir; Utzinger, Jurg; Paris, Daniel H.; McGready, Rose; Marr, Alexandra K.; Kino, Tomoshige; Terranegra, Annalisa; Al Khodor, Souhaila; Chaussabel, Damien; Kabeer, Basirudeen Syed Ahamed Share Save
Distinct baseline immune characteristics associated with responses to conjugated and unconjugated pneumococcal polysaccharide vaccines in older adults Ravichandran, Sathyabaarathi; Erra-Diaz, Fernando; Karakaslar, Onur E.; Marches, Radu; Kenyon-Pesce, Lisa; Rossi, Robert; Chaussabel, Damien; Nehar-Belaid, Djamel; Lafon, David C.; Pascual, Virginia; Palucka, Karolina; Paust, Silke; Nahm, Moon H.; Kuchel, George A.; Banchereau, Jacques; Ucar, Duygu Share Save
Unveiling the dynamics of the breast milk microbiome: impact of lactation stage and gestational age Singh, Parul; Al Mohannadi, Noora; Murugesan, Selvasankar; Almarzooqi, Fajr; Kabeer, Basirudeen Syed Ahamed; Marr, Alexandra Katharina; Kino, Tomoshige; Brummaier, Tobias; Terranegra, Annalisa; McGready, Rose; Nosten, Francois; Chaussabel, Damien; Al Khodor, Souhaila Share Save
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Harnessing large language models (LLMs) for candidate gene prioritization and selection Toufiq, Mohammed; Rinchai, Darawan; Bettacchioli, Eleonore; Kabeer, Basirudeen Syed Ahamed; Khan, Taushif; Subba, Bishesh; White, Olivia; Yurieva, Marina; George, Joshy; Jourde-Chiche, Noemie; Chiche, Laurent; Palucka, Karolina; Chaussabel, Damien Share Save
Multiomic Biological mOdifications in the immune response of patients treated with chemotherapy, anti-CD20, or immune-checkpoint inhibitors and receiving a Third dose of vaccinE against SARS-CoV-2 (the BO0STER study) Zoppoli, G.; Ferrando, L.; Ravera, F.; Dameri, M.; Lombardo, I.; Stabile, M.; Fallani, N.; Cigolini, B.; Gentilcore, G.; Bruzzone, B.; Domnich, A.; Orsi, A.; Ballerini, F.; Rinchai, D.; Chaussabel, D.; Bedognetti, D.; Grivel, J-C.; Genova, C.; Lemoli, R.; Ballestrero, A. Share Save
Association of Juvenile Dermatomyositis Disease Activity With the Expansion of Blood Memory B and T Cell Subsets Lacking Follicular Markers Gofshteyn, Jacqueline S.; Mansfield, Leanne; Spitznagle, Jacob; Balasubramanian, Preetha; Cardenas, Jacob; Miller, Thomas; Gu, Jinghua; Wang, Xuan; Punaro, Marilynn; Fuller, Julie; Nassi, Lorien; Stewart, Katie; Ohouo, Marina; Stagnar, Cristy; Baisch, Jeanine; Walters, Lynnette; Wang, Yuanyuan; Yan, Helena; Rinchai, Darawan; Chaussabel, Damien; Caielli, Simone; Hong, Seunghee; Onel, Karen; Wright, Tracey; Pascual, Virginia Share Save
Abundance of ACVR1B transcript is elevated during septic conditions: Perspectives obtained from a hands-on reductionist investigation Preechanukul, Anucha; Yimthin, Thatcha; Tandhavanant, Sarunporn; Brummaier, Tobias; Chomkatekaew, Chalita; Das, Sukanta; Kabeer, Basirudeen Syed Ahamed; Toufiq, Mohammed; Rinchai, Darawan; West, T. Eoin; Chaussabel, Damien; Chantratita, Narisara; Garand, Mathieu Share Save
High-temporal resolution profiling reveals distinct immune trajectories following the first and second doses of COVID-19 mRNA vaccines Rinchai, Darawan; Deola, Sara; Zoppoli, Gabriele; Kabeer, Basirudeen Syed Ahamed; Taleb, Sara; Pavlovski, Igor; Maacha, Selma; Gentilcore, Giusy; Toufiq, Mohammed; Mathew, Lisa; Liu, Li; Vempalli, Fazulur Rehaman; Mubarak, Ghada; Lorenz, Stephan; Sivieri, Irene; Cirmena, Gabriella; Dentone, Chiara; Cuccarolo, Paola; Giacobbe, Daniele Roberto; Baldi, Federico; Garbarino, Alberto; Cigolini, Benedetta; Cremonesi, Paolo; Bedognetti, Michele; Ballestrero, Alberto; Bassetti, Matteo; Hejblum, Boris P.; Augustine, Tracy; Van Panhuys, Nicholas; Thiebaut, Rodolphe; Branco, Ricardo; Chew, Tracey; Shojaei, Maryam; Short, Kirsty; Feng, Carl G.; Zughaier, Susu M.; De Maria, Andrea; Tang, Benjamin; Hssain, Ali Ait; Bedognetti, Davide; Grivel, Jean-Charles; Chaussabel, Damien Share Save
Understanding the Role of GLUT2 in Dysglycemia Associated with Fanconi-Bickel Syndrome Sharari, Sanaa; Kabeer, Basirudeen; Mohammed, Idris; Haris, Basma; Pavlovski, Igor; Hawari, Iman; Bhat, Ajaz Ahmad; Toufiq, Mohammed; Tomei, Sara; Mathew, Rebecca; Syed, Najeeb; Nisar, Sabah; Maacha, Selma; Grivel, Jean-Charles; Chaussabel, Damien; Ericsson, Johan; Hussain, Khalid Share Save
At-home blood collection and stabilization in high temperature climates using homeRNA Brown, Lauren G.; Haack, Amanda J.; Kennedy, Dakota S.; Adams, Karen N.; Stolarczuk, Jennifer E.; Takezawa, Meg G.; Berthier, Erwin; Thongpang, Sanitta; Lim, Fang Yun; Chaussabel, Damien; Garand, Mathieu; Theberge, Ashleigh B. Share Save
Presymptomatic diagnosis of postoperative infection and sepsis using gene expression signatures Lukaszewski, Roman A.; Jones, Helen E.; Gersuk, Vivian H.; Russell, Paul; Simpson, Andrew; Brealey, David; Walker, Jonathan; Thomas, Matt; Whitehouse, Tony; Ostermann, Marlies; Koch, Alexander; Zacharowski, Kai; Kruhoffer, Mogens; Chaussabel, Damien; Singer, Mervyn Share Save
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