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K

Keith A. Jolley

university of oxford

64H-index
248Paper Count
2.1WCitation Count
Published Papers 113
Publication Date
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Genomic and phenotypic analysis of ST25 A. baumannii identifies virulence-associated clades and capsular/outer core locus types
errmSphere
IF3.1
err2025-12-01
err0
PREAI
errMigliaccio, Antonella; Destanque, Thibault; Haenni, Marisa; Madec, Jean-Yves; Jolley, Keith A.; Stabile, Maria; De Gregorio, Eliana; Lupo, Agnese; Zarrilli, Raffaele
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Investigating the population structure of Moraxella catarrhalis using a cgMLST scheme and LIN code system
errNature Communications
IF15.7
err2025-10-17
err0
errOAAI
errIman Yassine; Keith A. Jolley; James E. Bray; Melissa J. Jansen van Rensburg; Fadheela Patel; Anna E. Sheppard; Heather J. Zar; Veronica Allen; Lemese Ah Tow; Martin C. J. Maiden; Mark P. Nicol; Angela B. Brueggemann
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In silico and in vitro analyses for the improved diagnosis of bacterial meningitis
errFrontiers in Microbiology
IF4.5
err2025-09-26
err0
errOAAI
errSimon T. L. Amoikon; Kanny Diallo; Jeremie K. Tuo; Naima Nasir; Vitalis F. Feteh; Grace Mzumara; Adeniyi Aderoba; Rebecca Jacques; Hansini Mandal; Keith A. Jolley; James E. Bray; Odile B. Harrison; Martin C. J. Maiden
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A core genome MLST scheme for Borrelia burgdorferi sensu lato improves insights into the evolutionary history of the species complex
errCELL REPORTS METHODS
IF4.5
err2025-01-01
err2
errOAAI
errHepner, Sabrina; Jolley, Keith A.; Castillo-Ramirez, Santiago; Mourkas, Evangelos; Dangel, Alexandra; Wieser, Andreas; Huebner, Johannes; Sing, Andreas; Fingerle, Volker; Margos, Gabriele
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Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data
errJOURNAL OF INFECTION
IF11.9
err2024-11-01
err0
errOAAI
errPascoe, Ben; Futcher, Georgina; Pensar, Johan; Bayliss, Sion C.; Mourkas, Evangelos; Calland, Jessica K.; Hitchings, Matthew D.; Joseph, Lavin A.; Lane, Charlotte G.; Greenlee, Tiffany; Arning, Nicolas; Wilson, Daniel J.; Jolley, Keith A.; Corander, Jukka; Maiden, Martin C. J.; Parker, Craig T.; Cooper, Kerry K.; Rose, Erica B.; Hiett, Kelli; B., Beau; Sheppard, Samuel K.
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Development and implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme for Haemophilus influenzae ( vol 10 , 001281 , 2024)
errMICROBIAL GENOMICS
IF4
err2024-10-22
err0
errOAAI
errKrisna, Made Ananda; Jolley, Keith A.; Monteith, William; Boubour, Alexandra; Hamers, Raph L.; Brueggemann, Angela B.; Harrison, Odile B.; Maiden, Martin C. J.
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Development of the Pneumococcal Genome Library, a core genome multilocus sequence typing scheme, and a taxonomic life identification number barcoding system to investigate and define structure
errMICROBIAL GENOMICS
IF4
err2024-08-13
err0
errOAAI
errRensburg, Melissa J. Jansen van; Berger, Duncan J.; Yassine, Iman; Shaw, David; Fohrmann, Andy; Bray, James E.; Jolley, Keith A.; Maiden, Martin C. J.; Brueggemann, Angela B.
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Development and implementation of a core genome multilocus sequence typing scheme for Haemophilus influenzae
errMICROBIAL GENOMICS
IF4
err2024-08-09
err2
errOAAI
errKrisna, Made Ananda; Jolley, Keith A.; Monteith, William; Boubour, Alexandra; Hamers, Raph L.; Brueggemann, Angela B.; Harrison, Odile B.; Maiden, Martin C. J.
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Epistasis, core-genome disharmony, and adaptation in recombining bacteria
errMBIO
IF4.7
err2024-06-12
err0
errOAAI
errTaylor, Aidan J.; Yahara, Koji; Pascoe, Ben; Ko, Seungwon; Mageiros, Leonardos; Mourkas, Evangelos; Calland, Jessica K.; Puranen, Santeri; Hitchings, Matthew D.; Jolley, Keith A.; Kobras, Carolin M.; Bayliss, Sion; Williams, Nicola J.; van Vliet, Arnoud H. M.; Parkhill, Julian; Maiden, Martin C. J.; Corander, Jukka; Hurst, Laurence D.; Falush, Daniel; Keim, Paul; Didelot, Xavier; Kelly, David J.; Sheppard, Samuel K.
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Recombinational exchange of M-fibril and T-pilus genes generates extensive cell surface diversity in the global group A Streptococcus population
errMBIO
IF4.7
err2024-05-08
err1
errOAAI
errBessen, Debra E.; Beall, Bernard W.; Hayes, Andrew; Huang, Weihua; Dichiara, Jeanne M.; Velusamy, Srinivasan; Tettelin, Herve; Jolley, Keith A.; Fallon, John T.; Chochua, Sopio; Alobaidallah, Mosaed S. A.; Higgs, Charlie; Barnett, Timothy C.; Steemson, John T.; Proft, Thomas; Davies, Mark R.
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Genomic Diversity and Antimicrobial Susceptibility of Invasive Neisseria meningitidis in South Africa, 2016-2021
errJOURNAL OF INFECTIOUS DISEASES
IF4.5
err2024-04-30
err0
errOAAI
errMikhari, Rito L.; Meiring, Susan; de Gouveia, Linda; Chan, Wai Yin; Jolley, Keith A.; Van Tyne, Daria; Harrison, Lee H.; Marjuki, Henju; Ismail, Arshad; Quan, Vanessa; Cohen, Cheryl; Walaza, Sibongile; von Gottberg, Anne; du Plessis, Mignon
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A core genome multi-locus sequence typing scheme for Streptococcus uberis: an evolution in typing a genetically diverse pathogen
errMICROBIAL GENOMICS
IF4
err2024-03-21
err3
errOAAI
errWhiley, Daniel; Jolley, Keith; Blanchard, Adam; Coffey, Tracey; Leigh, James
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Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus
errNATURE COMMUNICATIONS
IF15.7
err2024-03-16
err6
errOAAI
errLin, Gu-Lung; Drysdale, Simon B.; Snape, Matthew D.; O'Connor, Daniel; Brown, Anthony; MacIntyre-Cockett, George; Mellado-Gomez, Esther; de Cesare, Mariateresa; Ansari, M. Azim; Bonsall, David; Bray, James E.; Jolley, Keith A.; Bowden, Rory; Aerssens, Jeroen; Bont, Louis; Openshaw, Peter J. M.; Martinon-Torres, Federico; Nair, Harish; Golubchik, Tanya; Pollard, Andrew J.
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Phylogenomics of Acinetobacter species and analysis of antimicrobial resistance genes
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-10-19
err9
errOAAI
errMigliaccio, Antonella; Bray, James; Intoccia, Michele; Stabile, Maria; Scala, Giovanni; Jolley, Keith A.; Brisse, Sylvain; Zarrilli, Raffaele
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Acinetobacter baumannii IC2 and IC5 Isolates with Co-Existing blaOXA-143-like and blaOXA-72 and Exhibiting Strong Biofilm Formation in a Mexican Hospital
errMICROORGANISMS
IF4.2
err2023-09-14
err4
errOAAI
errMoreno-Manjon, Julia; Castillo-Ramirez, Santiago; Jolley, Keith A.; Maiden, Martin C. J.; Gayosso-Vazquez, Catalina; Fernandez-Vazquez, Jose Luis; Mateo-Estrada, Valeria; Giono-Cerezo, Silvia; Alcantar-Curiel, Maria Dolores
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Trends in invasive bacterial diseases during the first 2 years of the COVID-19 pandemic: analyses of prospective surveillance data from 30 countries and territories in the IRIS Consortium
errLANCET DIGITAL HEALTH
IF24.1
err2023-09-01
err36
errOAAI
errShaw, David; Abad, Raquel; Amin-Chowdhury, Zahin; Bautista, Adriana; Bennett, Desiree; Broughton, Karen; Cao, Bin; Casanova, Carlo; Choi, Eun Hwa; Chu, Yiu-Wai; Claus, Heike; Coelho, Juliana; Corcoran, Mary; Cottrell, Simon; Cunney, Robert; Cuypers, Lize; Dalby, Tine; Davies, Heather; de Gouveia, Linda; Deghmane, Ala-Eddine; Demczuk, Walter; Desmet, Stefanie; Domenech, Mirian; Drew, Richard; du Plessis, Mignon; Duarte, Carolina; Erlendsdottir, Helga; Fry, Norman K.; Fuursted, Kurt; Hale, Thomas; Henares, Desiree; Henriques-Normark, Birgitta; Hilty, Markus; Hoffmann, Steen; Humphreys, Hilary; Ip, Margaret; Jacobsson, Susanne; Johnson, Christopher; Johnston, Jillian; Jolley, Keith A.; Kawabata, Anibal; Kozakova, Jana; Kristinsson, Karl G.; Krizova, Pavla; Kuch, Alicja; Ladhani, Shamez; Lam, Thien-Tri; Leon, Maria Eugenia; Lindholm, Laura; Litt, David; Maiden, Martin C. J.; Martin, Irene; Martiny, Delphine; Mattheus, Wesley; Mccarthy, Noel; Meehan, Mary; Meiring, Susan; Moelling, Paula; Morfeldt, Eva; Morgan, Julie; Mulhall, Robert; Munoz-Almagro, Carmen; Murdoch, David; Murphy, Joy; Musilek, Martin; Mzabi, Alexandre; Novakova, Ludmila; Oftadeh, Shahin; Perez-Arguello, Amaresh; Perez-Vazquez, Maria; Perrin, Monique; Perry, Malorie; Prevost, Benoit; Roberts, Maria; Rokney, Assaf; Ron, Merav; Sanabria, Olga Marina; Scott, Kevin J.; Sheppard, Carmen; Siira, Lotta; Sintchenko, Vitali; Skoczynska, Anna; Sloan, Monica; Slotved, Hans-Christian; Smith, Andrew J.; Steens, Anneke; Taha, Muhamed-Kheir; Toropainen, Maija; Tzanakaki, Georgina; Vainio, Anni; van der Linden, Mark P. G.; van Sorge, Nina M.; Varon, Emmanuelle; Vohrnova, Sandra; von Gottberg, Anne; Yuste, Jose; Zanella, Rosemeire; Zhou, Fei; Brueggemann, Angela B.
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There are three major Neisseria gonorrhoeae β-lactamase plasmid variants which are associated with specific lineages and carry distinct TEM alleles
errMICROBIAL GENOMICS
IF4
err2023-07-12
err4
errOAAI
errElsener, Tabea A.; Jolley, Keith A.; Sanders, Eduard; Maiden, Martin C. J.; Cehovin, Ana; Tang, Christoph M.
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Core-Genome Multilocus Sequence Typing for Epidemiological and Evolutionary Analyses of Phytopathogenic Xanthomonas citri
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2023-05-31
err3
errOAAI
errRagupathy, R.; Jolley, K. A.; Zamuner, C.; Jones, J. B.; Redfern, J.; Behlau, F.; Ferreira, H.; Enright, M. C.
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Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile
errMBIO
IF4.7
err2023-04-25
err2
errOAAI
errDingle, Kate E.; Freeman, Jane; Didelot, Xavier; Quan, T. Phuong; Eyre, David W.; Swann, Jeremy; Spittal, William D.; Clark, Emma V.; Jolley, Keith A.; Walker, A. Sarah; Wilcox, Mark H.; Crook, Derrick W.
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Novel Multilocus Sequence Typing and Global Sequence Clustering Schemes for Characterizing the Population Diversity of Streptococcus mitis
errJOURNAL OF CLINICAL MICROBIOLOGY
IF5.4
err2023-01-26
err2
errOAAI
errKalizang'oma, Akuzike; Kwambana-Adams, Brenda; Chan, Jia Mun; Viswanath, Aishwarya; Gori, Andrea; Richard, Damien; Jolley, Keith A.; Lees, John; Goldblatt, David; Beleza, Sandra; Bentley, Stephen D.; Heyderman, Robert S.; Chaguza, Chrispin
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Research Directions

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Co-authors
Cooperation Journals
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Peter Vandamme
H-index: 115 · Papers: 865
R
Robert F. Breiman
H-index: 115 · Papers: 591
A
Andrew J. Pollard
H-index: 114 · Papers: 1.2K
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