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Yvan Saeys

VIB Center for Inflammation Research

82H-index
480Paper Count
3.8WCitation Count
Published Papers 137
Publication Date
CytoScan: Automated Detection of Technical Anomalies for Cytometry Quality Control
err2026-07-06
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errOAAI
errTim R. Mocking; Felix Zwolle; Yejin Park; Angèle Kelder; Yvan Saeys; Jacqueline Cloos; Sofie van Gassen; Costa Bachas
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CompensAID: An Automated Detection Tool for Reference Errors
err2026-02-01
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errOAAI
errOlsman, Rosan; Bonte, Sarah; Hofmans, Mattias; Buysse, Malicorne; Van Der Borght, Katrien; Saeys, Yvan; van der Velden, Vincent H. J.; Van Gassen, Sofie
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Cross-species cellular mapping and humanization of Fcγ receptors to advance antibody modeling
err2026-01-30
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PREAI
errKarel F. A. Van Damme; Dorine Sichien; Katrien Van der Borght; Justine Van Moorleghem; Sofie Van Gassen; Joseph Jorssen; Seppe De Winter; Elisabeth De Leeuw; Caihong Wang; Qingqing Chai; Anna Brotcke Zumsteg; Michael A. Schmid; Victor Bosteels; Pieter De Bleser; Manon Vanheerswynghels; Sofie De Prijck; Anna Bujko; Clint De Nolf; Martijn J. Schuijs; Bram Van Den Eeckhout; Ilse Rogiers; Robin Browaeys; Flore Thielemans; Katrien Quintelier; Jinke D’Hont; Tino Hochepied; Patricia Isnard Petit; Séverine Augier; Rachel Courtois; Stijn Verwaerde; Stijn Vanhee; Sjoerd Schetters; Charlotte L. Scott; Stein Aerts; Yvan Saeys; Alan J. Korman; Fabio Benigni; Davide Corti; Sophie Janssens; Niels Vandamme; Antonio P. Baptista; Christophe Desmet; Dirk Elewaut; Hamida Hammad; Ariane Morel; Eric Vivier; Fabiane Sônego; Kader Thiam; Sofie Voet; Bianca Balbino; Bart N. Lambrecht
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PIDgeon: An Explainable AI Model for Improved Flow Cytometry-Based Screening of Lymphoid Primary Immunodeficiencies
err2026-01-29
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errOAAI
errAnnelies Emmaneel; Jana Neirinck; Alba Torres-Valle; Sofie Van Gassen; Sarah Bonte; Malicorne Buysse; Jacques J M van Dongen; Alberto Orfao; Mirjam van der Burg; Tomas Kalina; Bart N Lambrecht; Ciel De Vriendt; Tessa Kerre; Filomeen Haerynck; Martin Pérez-Andrés; Mattias Hofmans; Carolien Bonroy; Yvan Saeys; null
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Feature subset weighting for distance-based supervised learning
err2025-09-07
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PREAI
errAdnan Theerens; Yvan Saeys; Chris Cornelis
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CytoNormPy Enables a Fast and Scalable Removal of Batch Effects in Cytometry Datasets
err2025-08-29
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errOAAI
errTarik Exner; Nicolaj Hackert; Luca Leomazzi; Sofie Van Gassen; Yvan Saeys; Hanns-Martin Lorenz; Ricardo Grieshaber-Bouyer
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Potential of biomarker-based enrichment strategies to identify critically ill patients for emerging cell death interventions
err2025-07-19
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errOAAI
errCyril Willemart; Ruth Seurinck; Tom Stroobants; Samya Van Coillie; Jorien De Loor; Sze Men Choi; Ria Roelandt; Mohan Rajapurkar; Symen Ligthart; Philippe G. Jorens; Dominique D. Benoit; Yvan Saeys; Evelyne Meyer; Eric Hoste; Tom Vanden Berghe
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Defining and benchmarking open problems in single-cell analysis
err2025-07-01
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errOAAI
errMalte D. Luecken; Scott Gigante; Daniel B. Burkhardt; Robrecht Cannoodt; Daniel C. Strobl; Nikolay S. Markov; Luke Zappia; Giovanni Palla; Wesley Lewis; Daniel Dimitrov; Michael E. Vinyard; D. S. Magruder; Michaela F. Mueller; Alma Andersson; Emma Dann; Qian Qin; Dominik J. Otto; Michal Klein; Olga Borisovna Botvinnik; Louise Deconinck; Kai Waldrant; Sai Nirmayi Yasa; Artur Szałata; Andrew Benz; Zhijian Li; Jonathan M. Bloom; Angela Oliveira Pisco; Julio Saez-Rodriguez; Drausin Wulsin; Luca Pinello; Yvan Saeys; Fabian J. Theis; Smita Krishnaswamy
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Impact of ATLG on CD4+ T-cell reconstitution after HSCT in children: a detailed immune profiling study
err2025-06-27
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errOAAI
errMarco M. Sindoni; Anita Toso; Francesca Limido; Cristina Bugarin; Tiziana Villa; Sarah Bonte; Yvan Saeys; Chiara Buracchi; Giulia Prunotto; Virginia Meda Spaccamela; Mathias Hauri; Oscar Maglia; Simona Sala; Domenico Gaspari; Grazia Fazio; Andrea Biondi; Adriana Balduzzi; Silvia Nucera; Giuseppe Gaipa
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Morphological Profiling of Imaging Flow Cytometry Data Uncovers Heterogeneity in Infected Gephyrocapsa huxleyi Cultures
err2025-06-16
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errOAAI
errMaxim Lippeveld; Daniel Peralta; Assaf Vardi; Flora Vincent; Yvan Saeys
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Evaluation of out-of-distribution detection methods for data shifts in single-cell transcriptomics
err2025-05-01
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errOAAI
errTheunissen, Lauren; Mortier, Thomas; Saeys, Yvan; Waegeman, Willem
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Identification and Characterization of Multiple Paneth Cell Types in the Mouse Small Intestine
errCELLS
IF5.2
err2024-08-27
err2
errOAAI
errTimmermans, Steven; Wallaeys, Charlotte; Garcia-Gonzalez, Natalia; Pollaris, Lotte; Saeys, Yvan; Libert, Claude
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Evaluating feature attribution methods in the image domain
err2024-05-24
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errOAAI
errGevaert, Arne; Rousseau, Axel-Jan; Becker, Thijs; Valkenborg, Dirk; De Bie, Tijl; Saeys, Yvan
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Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics
err2024-05-24
err10
errOAAI
errSang-aram, Chananchida; Browaeys, Robin; Seurinck, Ruth; Saeys, Yvan
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SpatialData: an open and universal data framework for spatial omics
err2024-03-20
err15
errOAAI
errMarconato, Luca; Palla, Giovanni; Yamauchi, Kevin A.; Virshup, Isaac; Heidari, Elyas; Treis, Tim; Vierdag, Wouter-Michiel; Toth, Marcella; Stockhaus, Sonja; Shrestha, Rahul B.; Rombaut, Benjamin; Pollaris, Lotte; Lehner, Laurens; Voehringer, Harald; Kats, Ilia; Saeys, Yvan; Saka, Sinem K.; Huber, Wolfgang; Gerstung, Moritz; Moore, Josh; Theis, Fabian J.; Stegle, Oliver
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Myelodysplastic neoplasms dissected into indolent, leukaemic and unfavourable subtypes by computational clustering of haematopoietic stem and progenitor cells
errLEUKEMIA
IF13.4
err2024-03-08
err3
errOAAI
errvan Spronsen, Margot F.; Van Gassen, Sofie; Duetz, Carolien; Westers, Theresia M.; Saeys, Yvan; van de Loosdrecht, Arjan A.
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Incorporating Topological Priors Into Low-Dimensional Visualizations Through Topological Regularization
err2024-01-01
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errOAAI
errHeiter, Edith; Vandaele, Robin; de Bie, Tijl; Saeys, Yvan; Lijffijt, Jefrey
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A bispecific Clec9A-PD-L1 targeted type I interferon profoundly reshapes the tumor microenvironment towards an antitumor state
err2023-11-29
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errOAAI
errVan Lint, Sandra; Van Parys, Alexander; van den Eeckhout, Bram; Vandamme, Niels; Plaisance, Stephane; Verhee, Annick; Catteeuw, Dominiek; Rogge, Elke; De Geest, Jennifer; Vanderroost, Nele; Roels, Jana; Saeys, Yvan; Uze, Gilles; Kley, Niko; Cauwels, Anje; Tavernier, Jan
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Machine Learning Pipeline for Predicting Bone Marrow Edema Along the Sacroiliac Joints on Magnetic Resonance Imaging
err2023-11-10
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errOAAI
errRoels, Joris; De Craemer, Ann-Sophie; Renson, Thomas; de Hooge, Manouk; Gevaert, Arne; van den Berghe, Thomas; Jans, Lennart; Herregods, Nele; Carron, Philippe; van den Bosch, Filip; Saeys, Yvan; Elewaut, Dirk
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