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The genetic architecture of HIV-1 virulence Blanquart, Francois; Wymant, Chris; Hall, Matthew; Power, Robert; Golubchik, Tanya; Gall, Astrid; De Cesare, Mariateresa; Macintyre-Cockett, George; Bakker, Margreet; Bezemer, Daniela; Gabrielaite, Migle; Ong, Swee Hoe; Kendall, Michelle; Sauter, Rafael; Bannert, Norbert; Fellay, Jacques; Grabowski, M. Kate; Gunsenheimer-Bartmeyer, Barbara; Gunthard, Huldrych F.; Kivela, Pia; Kouyos, Roger D.; Laeyendecker, Oliver; Marvig, Rasmus L.; Meixenberger, Karolin; Meyer, Laurence; van Sighem, Ard; Bonsall, David; Van Der Valk, Marc; Berkhout, Ben; Kellam, Paul; Cornelissen, Marion; Reiss, Peter; Fraser, Christophe Share Save
Estimating the contribution of setting-specific contacts to SARS-CoV-2 transmission using digital contact tracing data Wang, Zengmiao; Yang, Peng; Wang, Ruixue; Ferretti, Luca; Zhao, Lele; Pei, Shan; Wang, Xiaoli; Jia, Lei; Zhang, Daitao; Liu, Yonghong; Liu, Ziyan; Wang, Quanyi; Fraser, Christophe; Tian, Huaiyu Share Save
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey Lythgoe, Katrina A.; Golubchik, Tanya; Hall, Matthew; House, Thomas; Cahuantzi, Roberto; MacIntyre-Cockett, George; Fryer, Helen; Thomson, Laura; Nurtay, Anel; Ghafani, Mahan; Buck, David; Green, Angie; Trebes, Amy; Piazza, Paolo; Lonie, Lorne J.; Studley, Ruth; Rourke, Emma; Smith, Darren; Bashton, Matthew; Nelson, Andrew; Crown, Matthew; McCann, Clare; Young, Gregory R.; dos Santos, Rui Andre Nunes; Richards, Zack; Tariq, Adnan; Fraser, Christophe; Diamond, Ian; Barrett, Jeff; Walker, Ann Sarah; Bonsall, David Share Save
Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias (vol 19, e1011461, 2023) Fryer, Helen R.; Golubchik, Tanya; Hall, Matthew; Fraser, Christophe; Hinch, Robert; Ferretti, Luca; Thomson, Laura; Nurtay, Anel; Pellis, Lorenzo; House, Thomas; MacIntyre-Cockett, George; Trebes, Amy; Buck, David; Piazza, Paolo; Green, Angie; Lonie, Lorne J.; Smith, Darren; Bashton, Matthew; Crown, Matthew; Nelson, Andrew; Mccann, Clare M.; Tariq, Mohammed Adnan; Elstob, Claire J.; Dos Santos, Rui Nunes; Richards, Zack; Xhang, Xin; Hawley, Joseph; Lee, Mark R.; Carrillo-Barragan, Priscilla; Chapman, Isobel; Harthern-Flint, Sarah; Bonsall, David; Lythgoe, Katrina A. Share Save
Reply to Ekström and Ottersen: Real- time access to data during outbreaks is a key to avoid a local epidemic becoming a global pandemic Stenseth, Nils Chr.; Schlatte, Rudolf; Liu, Xiaoli; Pielke Jr, Roger; Chen, Bin; Bjornstad, Ottar N.; Kusnezov, Dimitri; Gao, George F.; Fraser, Christophe; Whittington, Jason D.; Gong, Peng; Guan, Dabo; Johnsen, Einar Broch Share Save
Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias Fryer, Helen R.; Golubchik, Tanya; Hall, Matthew; Fraser, Christophe; Hinch, Robert; Ferretti, Luca; Thomson, Laura; Nurtay, Anel; Pellis, Lorenzo; House, Thomas; MacIntyre-Cockett, George; Trebes, Amy; Buck, David; Piazza, Paolo; Green, Angie; Lonie, Lorne J.; Smith, Darren; Bashton, Matthew; Crown, Matthew; Nelson, Andrew; McCann, Clare M.; Tariq, Mohammed Adnan; Elstob, Claire J.; Dos Santos, Rui Nunes; Richards, Zack; Xhang, Xin; Hawley, Joseph; Lee, Mark R.; Carrillo-Barragan, Priscilla; Chapman, Isobel; Harthern-Flint, Sarah; Bonsall, David; Lythgoe, Katrina A. Share Save
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Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort Abdullahi, Adam; Kida, Ibrahim Musa; Maina, Umar Abdullahi; Ibrahim, Amina Husaini; Mshelia, James; Wisso, Haruna; Adamu, Abdullahi; Onyemata, James Ezenwa; Edun, Martin; Yusuph, Haruna; Aliyu, Sani H.; Charurat, Man; Abimiku, Alash'le; Abeler-Dorner, Lucie; Fraser, Christophe; Bonsall, David; PANGEA Consortium; Kemp, Steven A.; Gupta, Ravindra K. Share Save
Large-scale calibration and simulation of COVID-19 epidemiologic scenarios to support healthcare planning Groves-Kirkby, Nick; Wakeman, Ewan; Patel, Seema; Hinch, Robert; Poot, Tineke; Pearson, Jonathan; Tang, Lily; Kendall, Edward; Tang, Ming; Moore, Kim; Stevenson, Scott; Mathias, Bryn; Feige, Ilya; Nakach, Simon; Stevenson, Laura; O'Dwyer, Paul; Probert, William; Panovska-Griffiths, Jasmina; Fraser, Christophe Share Save
How to avoid a local epidemic becoming a global pandemic Stenseth, Nils Chr.; Schlatte, Rudolf; Liu, Xiaoli; Pielke, Roger, Jr.; Li, Ruiyun; Chen, Bin; Bjornstad, Ottar N.; Kusnezov, Dimitri; Gao, George F.; Fraser, Christophe; Whittington, Jason D.; Bai, Yuqi; Deng, Ke; Gong, Peng; Guan, Dabo; Xiao, Yixiong; Xu, Bing; Johnsen, Einar Broch Share Save
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Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1 Balakrishna, Suraj; Loosli, Tom; Zaheri, Maryam; Frischknecht, Paul; Huber, Michael; Kusejko, Katharina; Yerly, Sabine; Leuzinger, Karoline; Perreau, Matthieu; Ramette, Alban; Wymant, Chris; Fraser, Christophe; Kellam, Paul; Gall, Astrid; Hirsch, Hans H.; Stoeckle, Marcel; Rauch, Andri; Cavassini, Matthias; Bernasconi, Enos; Notter, Julia; Calmy, Alexandra; Gunthard, Huldrych F.; Metzner, Karin J.; Kouyos, Roger D. Share Save
Uptake of medical male circumcision with household-based testing, and the association of traditional male circumcision and HIV infection Zewdie, Kidist; Pickles, Michael; Floyd, Sian; Fidler, Sarah; Ayles, Helen; Bock, Peter; Hoddinott, Graeme; Mandla, Nomtha; Shanaube, Kwame; Simwinga, Musonda; Fraser, Christophe; Seeley, Janet; Piwowar-Manning, Estelle; Hayes, Richard; Donnell, Deborah Share Save
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Estimating SARS-CoV-2 variant fitness and the impact of interventions in England using statistical and geo-spatial agent-based models Hinch, Robert; Panovska-Griffiths, Jasmina; Probert, William J. M.; Ferretti, Luca; Wymant, Chris; Di Lauro, Francesco; Baya, Nikolas; Ghafari, Mahan; Abeler-Dorner, Lucie; Fraser, Christophe Share Save
Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions Panovska-Griffiths, J.; Swallow, B.; Hinch, R.; Cohen, J.; Rosenfeld, K.; Stuart, R. M.; Ferretti, L.; Di Lauro, F.; Wymant, C.; Izzo, A.; Waites, W.; Viner, R.; Bonell, C.; Fraser, C.; Klein, D.; Kerr, C. C. Share Save
Estimating the potential to prevent locally acquired HIV infections in a UNAIDS Fast-Track City, Amsterdam Blenkinsop, Alexandra; Monod, Melodie; van Sighem, Ard; Pantazis, Nikos; Bezemer, Daniela; op de Coul, Eline; van de Laar, Thijs; Fraser, Christophe; Prins, Maria; Reiss, Peter; de Bree, Godelieve J.; Ratmann, Oliver Share Save