logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
T

Terence P. Speed

Walter and Eliza Hall Institute of Medical Research

108H-index
640Paper Count
7.0WCitation Count
Published Papers 132
Publication Date
logo
CMDdemux: an efficient single cell demultiplexing method
errNucleic Acids Research
IF13.1
err2026-04-25
err0
errOAAI
errJianan Wang; Lizhong Chen; Daniel V Brown; Chris Y Chiu; Terence P Speed
errShare
errSave
Antigen reactivity defines tissue-resident memory and exhausted T cells in tumors
errNature Immunology
IF27.6
err2025-12-29
err0
errOAAI
errThomas N. Burn; Jan Schröder; Luke C. Gandolfo; Maleika Osman; Elanor N. Wainwright; Enid Y. N. Lam; Keely M. McDonald; Rachel B. Evans; Shihan Li; Daniel Rawlinson; Lachlan Dryburgh; Ali Zaid; Zoltan Maliga; Dominick Schienstock; Philippa Meiser; Hyun Jae Lee; Hongjin Lai; Marcela L. Moreira; Pirooz Zareie; Louis H-Y. Lee; Lutfi Huq; Susan N. Christo; Justine J. W. Seow; Keith A. Ching; Stéphane M. Guillaume; Kathy Knezevic; Simone L. Park; Maximilien Evrard; Jason Waithman; Thomas Gebhardt; Scott N. Mueller; Georgina E. Riddiough; Marcos V. Perini; Simon C. H. Tsao; Terence P. Speed; Peter K. Sorger; Sherene Loi; Francis R. Carbone; Stephanie Gras; Timothy S. Fisher; Bas J. Baaten; Mark A. Dawson; Laura K. Mackay
errShare
errSave
Building a theoretical foundation for combining negative controls and replicates
errANNALS OF THE INSTITUTE OF STATISTICAL MATHEMATICS
IF0.6
err2025-11-01
err0
PREAI
errJiang, Jiming; Gagnon-Bartsch, Johann A.; Speed, Terence P.
errShare
errSave
Parity and lactation induce T cell mediated breast cancer protection
errNature
IF48.5
err2025-10-20
err0
PREAI
errBalaji Virassamy; Franco Caramia; Peter Savas; Michael A. Harris; Jia-Wern Pan; Jianan Wang; Emmaline Brown; Megan M. R. O’Malley; Courtney T. van Geelen; Michael Hun; Thomas N. Burn; Sneha Sant; Jamieson D. Ballan; Jasmine Kay; Luis E. Lara Gonzalez; Kylie Clarke; Han Xian Aw Yeang; Rejhan Idrizi; Metta Jana; Damon J. Challice; Roberto Salgado; Heather Thorne; Cathie Poliness; Sophie Nightingale; Soo-Hwang Teo; Terence P. Speed; Jane Visvader; Paul J. Neeson; Phillip K. Darcy; Laura K. Mackay; Sherene Loi
errShare
errSave
The current landscape and emerging challenges of benchmarking single-cell methods
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2025-09-01
err0
errOAAI
errCao, Yue; Yu, Lijia; Torkel, Marni; Kim, Sanghyun; Lin, Yingxin; Yang, Pengyi; Speed, Terence P.; Ghazanfar, Shila; Yang, Jean Yee Hwa
errShare
errSave
Peripheral immune cell abundance differences link blood mitochondrial DNA copy number and Parkinson's disease
errNPJ PARKINSONS DISEASE
IF8.2
err2024-11-14
err0
errOAAI
errWang, Longfei; Han, Jiru; Fearnley, Liam G.; Milton, Michael; Rafehi, Haloom; Reid, Joshua; Gerring, Zachary F.; Masaldan, Shashank; Lang, Tali; Speed, Terence P.; Bahlo, Melanie
errShare
errSave
Establishing the Link between X-Chromosome Aberrations and TP53 Status, with Breast Cancer Patient Outcomes
errCELLS
IF5.2
err2023-09-11
err4
errOAAI
errCaramia, Franco; Speed, Terence P.; Shen, Hui; Haupt, Ygal; Haupt, Sue
errShare
errSave
sccomp: Robust differential composition and variability analysis for single- cell data
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-08-07
err5
errOAAI
errMangiola, Stefano; Roth-Schulze, Alexandra J.; Trussart, Marie; Zozaya-Valdes, Enrique; Ma, Mengyao; Gao, Zijie; Rubin, Alan F.; Speed, Terence P.; Shim, Heejung; Papenfuss, Anthony T.
errShare
errSave
An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences
errBMC GENOMICS
IF3.7
err2023-06-26
err0
errOAAI
errGurun, Burcu; Horton, Wesley; Murugan, Dhaarini; Zhu, Biqing; Leyshock, Patrick; Kumar, Sushil; Byrne, Katelyn T.; Vonderheide, Robert H.; Margolin, Adam A.; Mori, Motomi; Spellman, Paul T.; Coussens, Lisa M.; Speed, Terence P.
errShare
errSave
Genomic characterisation of hormone receptor-positive breast cancer arising in very young women
errANNALS OF ONCOLOGY
IF65.4
err2023-04-01
err15
errOAAI
errLuen, S. J.; Viale, G.; Nik-Zainal, S.; Savas, P.; Kammler, R.; Dell'Orto, P.; Biasi, O.; Degasperi, A.; Brown, L. C.; Lang, I.; MacGrogan, G.; Tondini, C.; Bellet, M.; Villa, F.; Bernardo, A.; Ciruelos, E.; Karlsson, P.; Neven, P.; Climent, M.; Mueller, B.; Jochum, W.; Bonnefoi, H.; Martino, S.; Davidson, N. E.; Geyer, C.; Chia, S. K.; Ingle, J. N.; Coleman, R.; Solbach, C.; Thurlimann, B.; Colleoni, M.; Coates, A. S.; Goldhirsch, A.; Fleming, G. F.; Francis, P. A.; Speed, T. P.; Regan, M. M.; Loi, S.
errShare
errSave
Removing unwanted variation from large-scale RNA sequencing data with PRPS
errNATURE BIOTECHNOLOGY
IF41.7
err2022-09-15
err23
errOAAI
errMolania, Ramyar; Foroutan, Momeneh; Gagnon-Bartsch, Johann A.; Gandolfo, Luke C.; Jain, Aryan; Sinha, Abhishek; Olshansky, Gavriel; Dobrovic, Alexander; Papenfuss, Anthony T.; Speed, Terence P.
errShare
errSave
Runx3 drives a CD8+ T cell tissue residency program that is absent in CD4+ T cells
errNATURE IMMUNOLOGY
IF27.6
err2022-07-26
err63
errOAAI
errFonseca, Raissa; Burn, Thomas N.; Gandolfo, Luke C.; Devi, Sapna; Park, Simone L.; Obers, Andreas; Evrard, Maximilien; Christo, Susan N.; Buquicchio, Frank A.; Lareau, Caleb A.; McDonald, Keely M.; Sandford, Sarah K.; Zamudio, Natasha M.; Zanluqui, Nagela G.; Zaid, Ali; Speed, Terence P.; Satpathy, Ansuman T.; Mueller, Scott N.; Carbone, Francis R.; Mackay, Laura K.
errShare
errSave
RUV-III-NB: normalization of single cell RNA-seq data
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-06-27
err6
errOAAI
errSalim, Agus; Molania, Ramyar; Wang, Jianan; De Livera, Alysha; Thijssen, Rachel; Speed, Terence P.
errShare
errSave
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression
errNATURE BIOTECHNOLOGY
IF41.7
err2022-06-13
err32
errOAAI
errCao, Shaolong; Wang, Jennifer R.; Ji, Shuangxi; Yang, Peng; Dai, Yaoyi; Guo, Shuai; Montierth, Matthew D.; Shen, John Paul; Zhao, Xiao; Chen, Jingxiao; Lee, Jaewon James; Guerrero, Paola A.; Spetsieris, Nicholas; Engedal, Nikolai; Taavitsainen, Sinja; Yu, Kaixian; Livingstone, Julie; Bhandari, Vinayak; Hubert, Shawna M.; Daw, Najat C.; Futreal, P. Andrew; Efstathiou, Eleni; Lim, Bora; Viale, Andrea; Zhang, Jianjun; Nykter, Matti; Czerniak, Bogdan A.; Brown, Powel H.; Swanton, Charles; Msaouel, Pavlos; Maitra, Anirban; Kopetz, Scott; Campbell, Peter; Speed, Terence P.; Boutros, Paul C.; Zhu, Hongtu; Urbanucci, Alfonso; Demeulemeester, Jonas; Van Loo, Peter; Wang, Wenyi
errShare
errSave
Discrete tissue microenvironments instruct diversity in resident memory T cell function and plasticity
errNATURE IMMUNOLOGY
IF27.6
err2021-08-23
err115
PREAI
errChristo, Susan N.; Evrard, Maximilien; Park, Simone L.; Gandolfo, Luke C.; Burn, Thomas N.; Fonseca, Raissa; Newman, Dane M.; Alexandre, Yannick O.; Collins, Nicholas; Zamudio, Natasha M.; Souza-Fonseca-Guimaraes, Fernando; Pellicci, Daniel G.; Chisanga, David; Shi, Wei; Bartholin, Laurent; Belz, Gabrielle T.; Huntington, Nicholas D.; Lucas, Andrew; Lucas, Michaela; Mueller, Scott N.; Heath, William R.; Ginhoux, Florent; Speed, Terence P.; Carbone, Francis R.; Kallies, Axel; Mackay, Laura K.
errShare
errSave
A hierarchical approach to removal of unwanted variation for large-scale metabolomics data
errNATURE COMMUNICATIONS
IF15.7
err2021-08-17
err25
errOAAI
errKim, Taiyun; Tang, Owen; Vernon, Stephen T.; Kott, Katharine A.; Koay, Yen Chin; Park, John; James, David E.; Grieve, Stuart M.; Speed, Terence P.; Yang, Pengyi; Figtree, Gemma A.; O'Sullivan, John F.; Yang, Jean Yee Hwa
errShare
errSave
Serum microRNA is a biomarker for post-operative monitoring in glioma (Sep, 10.1007/s11060-020-03566-w, 2020)
errJOURNAL OF NEURO-ONCOLOGY
IF3.1
err2020-10-07
err1
errOAAI
errMorokoff, Andrew; Jones, Jordan; Nguyen, Hong; Ma, Chenkai; Lasocki, Arian; Gaillard, Frank; Bennett, Iwan; Luwor, Rod; Stylli, Stanley; Paradiso, Lucia; Koldej, Rachel; Paldor, Iddo; Molania, Ramyar; Speed, Terence P.; Webb, Andrew; Infusini, Guiseppe; Li, Jason; Malpas, Charles; Kalincik, Tomas; Drummond, Katharine; Siegal, Tali; Kaye, Andrew H.
errShare
errSave
Serum microRNA is a biomarker for post-operative monitoring in glioma
errJOURNAL OF NEURO-ONCOLOGY
IF3.1
err2020-09-11
err35
PREAI
errMorokoff, Andrew; Jones, Jordan; Nguyen, Hong; Ma, Chenkai; Lasocki, Arian; Gaillard, Frank; Bennett, Iwan; Luwor, Rod; Stylli, Stanley; Paradiso, Lucia; Koldej, Rachel; Paldor, Iddo; Molania, Ramyar; Speed, Terence P.; Webb, Andrew; Infusini, Guiseppe; Li, Jason; Malpas, Charles; Kalincik, Tomas; Drummond, Katharine; Siegal, Tali; Kaye, Andrew H.
errShare
errSave
Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets
errELIFE
IF0
err2020-09-07
err23
errOAAI
errTrussart, Marie; Teh, Charis E.; Tan, Tania; Leong, Lawrence; Gray, Daniel H. D.; Speed, Terence P.
errShare
errSave
Strategies to enable large-scale proteomics for reproducible research
errNATURE COMMUNICATIONS
IF15.7
err2020-07-30
err82
errOAAI
errPoulos, Rebecca C.; Hains, Peter G.; Shah, Rohan; Lucas, Natasha; Xavier, Dylan; Manda, Srikanth S.; Anees, Asim; Koh, Jennifer M. S.; Mahboob, Sadia; Wittman, Max; Williams, Steven G.; Sykes, Erin K.; Hecker, Michael; Dausmann, Michael; Wouters, Merridee A.; Ashman, Keith; Yang, Jean; Wild, Peter J.; deFazio, Anna; Balleine, Rosemary L.; Tully, Brett; Aebersold, Ruedi; Speed, Terence P.; Liu, Yansheng; Reddel, Roger R.; Robinson, Phillip J.; Zhong, Qing
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
G
Gordon B. Mills
H-index: 231 · Papers: 3.5K
M
Mark J. Daly
H-index: 224 · Papers: 1.2K
R
Ruedi Aebersold
H-index: 198 · Papers: 1.2K
R
Richard A. Gibbs
H-index: 190 · Papers: 1.3K
J
Joshua M. Stuart
H-index: 170 · Papers: 578
View more