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Paul Wilmes

university of luxembourg

64H-index
448Paper Count
2.2WCitation Count
Published Papers 139
Publication Date
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PathoFact 2.0: An Integrative Pipeline for the Prediction of Antimicrobial Resistance Genes, Virulence Factors, Toxins and Toxin-associated Proteins, and Biosynthetic Gene Clusters in Metagenomes
errGigaScience
IF3.9
err2026-05-22
err0
errOAAI
errLuis F Delgado; Júlia Ortís Sunyer; Cedric C Laczny; Oskar Hickl; Patrick May; Paul Wilmes; null
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Integrative analysis of the mouse cecal microbiome across diet, age, and weight in the diverse BXD population
errMicrobiome
IF12.7
err2026-05-12
err0
errOAAI
errZiyun Zhou; Arianna Lamanna; Rashi Halder; Emeline Pansart; Shaman Narayanasamy; Besma Boussoufa; Thamila Kerkour; Paul Wilmes; Evan Williams
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High-resolution multi-omics enhances prediction and detection of smORF-encoded proteins in the human gut microbiome
errNature Communications
IF15.7
err2026-05-09
err0
errOAAI
errMegan E. Davin; Júlia Ortís Sunyer; Luis F. Delgado; Steven L. Tavis; Tuesday Lowndes; Zainab Zafar; Jordan Caussin; Rashi Halder; Oskar Hickl; Cédric C. Laczny; Etienne Hanslian; Daniela A. Koppold; Anika Rajput-Khokhar; Nico Steckhan; Sebastian Schade; Jochen Schneider; Brit Mollenhauer; Andreas Michalsen; Patrick May; Robert L. Hettich; Paul Wilmes
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immunoHuMiX: A personalizable gut-on-chip model for unraveling human microbiome–immune interactions
errView
IF8.5
err2026-03-24
err0
errOAAI
errCharlotte De Rudder; Kacy Greenhalgh; Joanna Baginska; Camille Martin-Gallausiaux; Léa Grandmougin; Rémy Villette; Mara Lucchetti; Bérénice Hansen; Marek Ostaszewski; Viacheslav A. Petrov; Koji Atarashi; Lena Weidert; Audrey Frachet Bour; Dominik Ternes; Javier Ramiro-Garcia; Antoine Malabirade; Takeshi Tanoue; Marc Mac Giolla Eain; Elisabeth Letellier; Matthew Barrett; Jérôme Lacombe; Frederic Zenhausern; Coralie Guérin; Markus Ollert; Carole Seguin-Devaux; Kenya Honda; Paul Wilmes
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Fasting and Nutrition as Promising Treatment Strategies for Women with Rheumatoid Arthritis in Transitional Hormonal Stages
errNutrients
IF5
err2026-02-11
err0
errOAAI
errBérénice Hansen; Evdokia Alvanou; Maria Angeliki S. Pavlou; Paul Wilmes; Jochen G. Schneider
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Fetal programming by the parental microbiome of offspring behavior, and DNA methylation and gene expression within the hippocampus
errMicrobiome
IF12.7
err2025-12-12
err0
errOAAI
errKevin L. Gustafson; Susheel Bhanu Busi; Zachary L. McAdams; Rachael E. McCorkle; Pavlo Khodakivskyi; Nathan J. Bivens; Daniel J. Davis; Murugesan Raju; Lyndon M. Coghill; Elena A. Goun; James Amos-Landgraf; Craig L. Franklin; Paul Wilmes; Rene Cortese; Aaron C. Ericsson
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Resistant starch improves Parkinson’s disease symptoms through restructuring of the gut microbiome and modulating inflammation
errBrain, Behavior, and Immunity
IF0
err2025-12-11
err0
errOAAI
errViacheslav A. Petrov; Sebastian Schade; Cedric C. Laczny; Jenny Hallqvist; Patrick May; Christian Jäger; Velma T.E. Aho; Oskar Hickl; Rashi Halder; Elisabeth Lang; Jordan Caussin; Laura A. Lebrun; Janine Schulz; Marcus Michael Unger; Kevin Mills; Brit Mollenhauer; Paul Wilmes
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Critical Assessment of MetaProteome Investigation 2 (CAMPI-2): multi-laboratory assessment of sample processing methods to stabilize fecal microbiome for functional analysis
errMicrobiome
IF12.7
err2025-11-27
err0
errOAAI
errAlessandro Tanca; Kay Schallert; Lucia Grenga; Samantha L. Peters; Marcello Abbondio; Laura De Diego; Maria Antonietta Deledda; Sven-Bastiaan Haange; Guylaine Miotello; Johan S. Sáenz; Maximilian Wolf; Felipe Bastida; Simon Devos; Guillermina Hernandez-Raquet; Jana Seifert; Paul Wilmes; Tim Van Den Bossche; Benoit J. Kunath; Robert Heyer; Nico Jehmlich; Dirk Benndorf; Robert L. Hettich; Jean Armengaud; Sergio Uzzau
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Correction: Integrated multi‑omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson’s disease
errMicrobiome
IF12.7
err2025-11-08
err0
errOAAI
errRémy Villette; Júlia Ortís Sunyer; Polina V. Novikova; Velma T. E. Aho; Viacheslav A. Petrov; Oskar Hickl; Susheel Bhanu Busi; Charlotte De Rudder; Benoit J. Kunath; Anna Heintz‑Buschart; Jean‑Pierre Trezzi; Rashi Halder; Christian Jäger; Laura A. Lebrun; Annegrät Daujeumont; Sebastian Schade; Annette Janzen; Nico Jehmlich; Martin von Bergen; Cédric C. Laczny; Patrick May; Claudia Trenkwalder; Wolfgang Oertel; Brit Mollenhauer; Paul Wilmes
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Ageing process characterization of innovative substrates in vertical-flow constructed wetlands after treating greywater
errJournal of Environmental Management
IF8.4
err2025-10-13
err0
errOAAI
errFernanda Cristina Muniz Sacco; Silvia Venditti; Paul Wilmes; Heidrun Steinmetz; Joachim Hansen
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Integrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson’s disease
errMicrobiome
IF12.7
err2025-10-08
err0
errOAAI
errRémy Villette; Júlia Ortís Sunyer; Polina V. Novikova; Velma T. E. Aho; Viacheslav A. Petrov; Oskar Hickl; Susheel Bhanu Busi; Charlotte De Rudder; Benoit J. Kunath; Anna Heintz-Buschart; Jean-Pierre Trezzi; Rashi Halder; Christian Jäger; Laura A. Lebrun; Annegrät Daujeumont; Sebastian Schade; Annette Janzen; Nico Jehmlich; Martin von Bergen; Cédric C. Laczny; Patrick May; Claudia Trenkwalder; Wolfgang Oertel; Brit Mollenhauer; Paul Wilmes
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Fasting followed by time-restricted eating leads to sustained symptom improvement in patients with Parkinson’s disease
errClinical Nutrition ESPEN
IF2.6
err2025-09-19
err0
PREAI
errB. Hansen; K. Roomp; R. Villette; B. Mollenhauer; S. Schade; P. Wilmes; J. Schneider
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Human gut microbiome gene co-expression network reveals a loss in taxonomic and functional diversity in Parkinson’s disease
errnpj Biofilms and Microbiomes
IF9.2
err2025-07-24
err0
errOAAI
errRémy Villette; Polina V. Novikova; Cédric C. Laczny; Brit Mollenhauer; Patrick May; Paul Wilmes
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Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes
errMICROBIOME
IF12.7
err2025-05-23
err0
errOAAI
errHeyer, Robert; Wolf, Maximilian; Benndorf, Dirk; Uzzau, Sergio; Seifert, Jana; Grenga, Lucia; Pabst, Martin; Schmitt, Heike; Mesuere, Bart; Van Den Bossche, Tim; Haange, Sven-Bastiaan; Jehmlich, Nico; Di Luca, Mariagrazia; Ferrer, Manuel; Serrano-Villar, Sergio; Armengaud, Jean; Bode, Helge B.; Hellwig, Patrick; Masselot, Catherine Robbe; Leonard, Renaud; Wilmes, Paul
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An Approach to Integrate Metagenomics, Metatranscriptomics and Metaproteomics Data in Public Data Resources
errPROTEOMICS
IF3.9
err2025-04-28
err1
errOAAI
errShengbo Wang; Satwant Kaur; Benoit J. Kunath; Patrick May; Lorna Richardson; Alexander B. Rogers; Paul Wilmes; Robert D. Finn; Juan Antonio Vizcaíno
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Trajectories of persisting Covid-19 symptoms up to 24 months after acute infection: findings from the Predi-Covid cohort study
errBMC INFECTIOUS DISEASES
IF3
err2025-04-25
err0
errOAAI
errFischer, Aurelie; Zhang, Lu; Elbeji, Abir; Wilmes, Paul; Snoeck, Chantal J.; Larche, Jerome; Oustric, Pauline; Ollert, Markus; Fagherazzi, Guy
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Personalized modeling of gut microbiome metabolism throughout the first year of life
errCOMMUNICATIONS MEDICINE
IF6.3
err2024-12-30
err0
errOAAI
errShaaban, Rola; Busi, Susheel Bhanu; Wilmes, Paul; Gueant, Jean-Louis; Heinken, Almut
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Exploring environmental modifiers of LRRK2-associated Parkinson's disease penetrance: An exposomics and metagenomics pilot study on household dust
errENVIRONMENT INTERNATIONAL
IF9.7
err2024-12-01
err0
errOAAI
errAndujar, Begona Talavera; Pereira, Sandro L.; Busi, Susheel Bhanu; Usnich, Tatiana; Borsche, Max; Ertan, Sibel; Bauer, Peter; Rolfs, Arndt; Hezzaz, Soraya; Ghelfi, Jenny; Brueggemann, Norbert; Antony, Paul; Wilmes, Paul; Klein, Christine; Gruenewald, Anne; Schymanski, Emma L.
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A 15-day pilot biodiversity intervention with horses in a farm system leads to gut microbiome rewilding in 10 urban Italian children
errONE HEALTH
IF4.5
err2024-12-01
err0
errOAAI
errScicchitano, Daniel; Foresto, Lucia; Laczny, Cedric C.; Cinti, Nicolo; Vitagliano, Rosalba; Halder, Rashi; Morri, Gaja; Turroni, Silvia; D'Amico, Federica; Palladino, Giorgia; Fiori, Jessica; Wilmes, Paul; Rampelli, Simone; Candela, Marco
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Multiomics approaches disclose very-early molecular and cellular switches during insect-venom allergen-specific immunotherapy: an observational study
errNATURE COMMUNICATIONS
IF15.7
err2024-11-26
err0
errOAAI
errPogorelov, Dimitrii; Bode, Sebastian Felix Nepomuk; He, Xin; Ramiro-Garcia, Javier; Hedin, Fanny; Ammerlaan, Wim; Konstantinou, Maria; Capelle, Christophe M.; Zeng, Ni; Poli, Aurelie; Domingues, Olivia; Montamat, Guillem; Hunewald, Oliver; Cire, Severine; Baron, Alexandre; Longworth, Joseph; Demczuk, Agnieszka; Bazon, Murilo Luiz; Casper, Ingrid; Klimek, Ludger; Neuberger-Castillo, Lorie; Revets, Dominique; Guyonnet, Lea; Delhalle, Sylvie; Zimmer, Jacques; Benes, Vladimir; Codreanu-Morel, Francoise; Lehners-Weber, Christiane; Weets, Ilse; Alper, Pinar; Brenner, Dirk; Gutermuth, Jan; Guerin, Coralie; Morisset, Martine; Hentges, Francois; Schneider, Reinhard; Shamji, Mohamed H.; Betsou, Fay; Wilmes, Paul; Glaab, Enrico; Cosma, Antonio; Goncalves, Jorge; Hefeng, Feng Q.; Ollert, Markus
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Research Directions

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Co-authors
Cooperation Journals
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Jillian F. Banfield
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Andrew T. Chan
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