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Shinichi Sunagawa

eth zürich

89H-index
386Paper Count
5.5WCitation Count
Published Papers 93
Publication Date
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Nitrogen fixation rates increase with diazotroph richness in the global ocean
errScientific Reports
IF3.9
err2026-07-11
err0
errOAAI
errDominic Eriksson; Damiano Righetti; Fabio Benedetti; Nicolas Gruber; Lucas Paoli; Guillem Salazar; Shinichi Sunagawa; Meike Vogt
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In silico typing maps the natural diversity of Escherichia coli transporter-dependent capsules
errNature Microbiology
IF19.4
err2026-04-23
err0
errOAAI
errSamuel Miravet-Verde; Elisabetta Cacace; Carine Roese Mores; Christoph Rutschmann; Chia-wei Lin; Hans-Joachim Ruscheweyh; Aline Cuénod; Elisa Cappio Barazzone; Enora Marrec; Kateryna Vershynina; Raffael Schumann; Dan J. Bower; Mario Schubert; Adrian Egli; Timm Fiebig; Emma Slack; Shinichi Sunagawa; Timothy G. Keys
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errSave
Phage-steering permits antibody-mediated clearance of E. coli K1 from the gut
errNature Communications
IF15.7
err2026-03-24
err0
errOAAI
errLouise Larsson; Anouk Bertola; Nicolas Wenner; Jasmine Kaur; Sara Dion; Leonardo Lemos Rocha; Timothy Keys; Christoph Rutschmann; Kateryna Vershynina; Despoina Dimakou; Elisa Cappio Barazzone; Verena Lentsch; Niina Ruoho; Carine Roese Mores; Raffael Schumann; Shinichi Sunagawa; Erick Denamur; Emma Slack; Médéric Diard
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errSave
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity
errNature
IF48.5
err2026-02-25
err0
errOAAI
errFabienne Wiederkehr; Lucas Paoli; Daniel Richter; Dora Racunica; Hans-Joachim Ruscheweyh; Martin Sperfeld; James O’Brien; Samuel Miravet-Verde; Alena B. Streiff; Jessica Ransome; Clara Chepkirui; Taylor Priest; Anna Sintsova; Guillem Salazar; Kalia S. I. Bistolas; Teresa Sawyer; Karine Labadie; Kim-Isabelle Mayer; Aude Perdereau; Maggie M. Reddy; Clémentine Moulin; Emilie Boissin; Guillaume Bourdin; Juliette Cailliau; Guillaume Iwankow; Julie Poulain; Sarah Romac; Serge Planes; Denis Allemand; Sylvain Agostini; Chris Bowler; Eric Douville; Didier Forcioli; Pierre E. Galand; Fabien Lombard; Pedro H. Oliveira; Olivier P. Thomas; Rebecca Vega Thurber; Romain Troublé; Christian R. Voolstra; Patrick Wincker; Maren Ziegler; Jörn Piel; Shinichi Sunagawa
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Uncovering Cas9 PAM diversity through metagenomic mining and machine learning
errNature Communications
IF15.7
err2026-02-08
err0
errOAAI
errTao Fang; Lea Bogensperger; Lilith Feer; Ahmed Allam; Valentyn Bezshapkin; Zsolt Balázs; Christian von Mering; Shinichi Sunagawa; Michael Krauthammer; Gerald Schwank
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errSave
Induced endosymbiosis between a fungus and bacterium reveals a shift from antagonism to commensalism
errNature Communications
IF15.7
err2025-11-28
err0
errOAAI
errThomas Gassler; Gabriel H. Giger; Anna Sintsova; Olivia X. Bossert; Alannah Holderbusch; Miriam Bortfeld-Miller; Benoit Dehapiot; Shinichi Sunagawa; Julia A. Vorholt
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errSave
Widespread and intron-rich mirusviruses are predicted to reproduce in nuclei of unicellular eukaryotes
errNature Microbiology
IF19.4
err2025-11-28
err0
errOAAI
errSofia Medvedeva; Ulysse Guyet; Eric Pelletier; Hans-Joachim Ruscheweyh; Shinichi Sunagawa; Hiroyuki Ogata; Frank O. Aylward; Morgan Gaïa; Natalya Yutin; Eugene V. Koonin; Mart Krupovic; Tom O. Delmont
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errSave
Salmonella multimutants enable efficient identification of SPI-2 effector protein function in gut inflammation and systemic colonization
errNature Communications
IF15.7
err2025-11-06
err0
errOAAI
errJoshua P. M. Newson; Flavia Gürtler; Pietro Piffaretti; Nicolò Barbieri; Annina Meyer; Anna Sintsova; Manja Barthel; Yves Steiger; Sarah C. McHugh; Ursina Enz; Neal M. Alto; Shinichi Sunagawa; Wolf-Dietrich Hardt
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The Gfr Uptake System Provides a Context-Dependent Fitness Advantage to Salmonella Typhimurium SL1344 During the Initial Gut Colonization Phase
errMolecular Microbiology
IF2.6
err2025-10-13
err0
errOAAI
errLea Fuchs; Cora Lisbeth Dieterich; Elena Melgarejo Ros; Philipp Keller; Anna Sintsova; Leanid Laganenka; Thomas A. Scott; Christopher Schubert; Shinichi Sunagawa; Julia A. Vorholt; Jörn Piel; Wolf-Dietrich Hardt; Bidong D. Nguyen
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errSave
Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition
errNATURE COMMUNICATIONS
IF15.7
err2025-03-20
err1
errOAAI
errKroon, Sanne; Malcic, Dejan; Weidert, Lena; Bircher, Lea; Boldt, Leonardo; Christen, Philipp; Kiefer, Patrick; Sintsova, Anna; Nguyen, Bidong D.; Barthel, Manja; Steiger, Yves; Clerc, Melanie; Herzog, Mathias K. -M.; Chen, Carmen; Gul, Ersin; Guery, Benoit; Slack, Emma; Sunagawa, Shinichi; Vorholt, Julia A.; Maier, Lisa; Lacroix, Christophe
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Assessing environmental gradients in relation to dark CO2 fixation in estuarine wetland microbiomes
errAPPLIED AND ENVIRONMENTAL MICROBIOLOGY
IF3.7
err2025-01-31
err1
errOAAI
errGrueterich, Luise; Woodhouse, Jason Nicholas; Mueller, Peter; Tiemann, Amos; Ruscheweyh, Hans-Joachim; Sunagawa, Shinichi; Grossart, Hans-Peter; Streit, Wolfgang R.
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errSave
Plant microbiota feedbacks through dose-responsive expression of general non-self response genes
errNATURE PLANTS
IF13.6
err2024-12-03
err0
errOAAI
errKeppler, Andreas; Roulier, Michelle; Pfeilmeier, Sebastian; Petti, Gabriella C.; Sintsova, Anna; Maier, Benjamin A.; Bortfeld-Miller, Miriam; Sunagawa, Shinichi; Zipfel, Cyril; Vorholt, Julia A.
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Metagenomic study of lake microbial mats reveals protease-inhibiting antiviral peptides from a core microbiome member
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-11-25
err0
PREAI
errPadhi, Chandrashekhar; Field, Christopher M.; Forneris, Clarissa C.; Olszewski, Dominik; Fraley, Amy E.; Sandu, Ioana; Scott, Thomas A.; Farnung, Jakob; Ruscheweyh, Hans - Joachim; Panda, Ananta Narayan; Oxenius, Annette; Greber, Urs F.; Bode, Jeffrey W.; Sunagawa, Shinichi; Raina, Vishakha; Suar, Mrutyunjay; Piel, Joern
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The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-11
err0
errOAAI
errDmitrijeva, Marija; Ruscheweyh, Hans-Joachim; Feer, Lilith; Li, Kang; Miravet-Verde, Samuel; Sintsova, Anna; Mende, Daniel R.; Zeller, Georg; Sunagawa, Shinichi
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Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments
errISME COMMUNICATIONS
IF6.1
err2024-10-15
err0
errOAAI
errBaumann, Kathrin B. L.; Mazzoli, Alessandra; Salazar, Guillem; Ruscheweyh, Hans-Joachim; Mueller, Beat; Niederdorfer, Robert; Sunagawa, Shinichi; Lever, Mark A.; Lehmann, Moritz F.; Burgmann, Helmut
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Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores
errMICROBIOME
IF12.7
err2024-09-19
err0
errOAAI
errLi, Qing; Ruscheweyh, Hans-Joachim; Ostergaard, Laerke Hartmann; Libertella, Micael; Simonsen, Kim Skalborg; Sunagawa, Shinichi; Scoma, Alberto; Schwab, Clarissa
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Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters
errMICROBIOME
IF12.7
err2024-03-27
err4
errOAAI
errVillena-Alemany, Cristian; Mujakic, Izabela; Fecskeova, Livia K.; Woodhouse, Jason; Auladell, Adria; Dean, Jason; Hanusova, Martina; Socha, Magdalena; Gazulla, Carlota R.; Ruscheweyh, Hans-Joachim; Sunagawa, Shinichi; Kavagutti, Vinicius Silva; Andrei, Adrian-Stefan; Grossart, Hans-Peter; Ghai, Rohit; Koblizek, Michal; Piwosz, Kasia
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Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions
errNATURE COMMUNICATIONS
IF15.7
err2024-03-22
err7
errOAAI
errCausevic, Senka; Dubey, Manupriyam; Morales, Marian; Salazar, Guillem; Sentchilo, Vladimir; Carraro, Nicolas; Ruscheweyh, Hans-Joachim; Sunagawa, Shinichi; van der Meer, Jan Roelof
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Sea surface temperature reconstruction in the Pacific Ocean using multi-elemental proxy in Porites and Diploastrea corals: Application to Palau Archipelago
errCHEMICAL GEOLOGY
IF3.6
err2024-02-01
err1
PREAI
errCanesi, Marine; Douville, Eric; Montagna, Paolo; Bordier, Louise; Caquineau, Sandrine; Pons-Branchu, Edwige; Iwankow, Guillaume; Stolarski, Jaroslaw; Allemand, Denis; Planes, Serge; Moulin, Clementine; Lombard, Fabien; Bourdin, Guillaume; Trouble, Romain; Agostini, Sylvain; Banaigs, Bernard; Boissin, Emilie; Boss, Emmanuel; Bowler, Chris; de Vargas, Colomban; Flores, J. Michel; Forcioli, Didier; Furla, Paola; Gilson, Eric; Galand, Pierre E.; Pesant, Stephane; Sunagawa, Shinichi; Thomas, Olivier P.; Thurber, Rebecca Vega; Voolstra, Christian R.; Wincker, Patrick; Zoccola, Didier; Reynaud, Stephanie
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From microbiome composition to functional engineering, one step at a time
errMICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
IF7.8
err2023-12-20
err9
errOAAI
errBurz, Sebastian Dan; Causevic, Senka; Dal Co, Alma; Dmitrijeva, Marija; Engel, Philipp; Garrido-Sanz, Daniel; Greub, Gilbert; Hapfelmeier, Siegfried; Hardt, Wolf-Dietrich; Hatzimanikatis, Vassily; Heiman, Clara Margot; Herzog, Mathias Klaus-Maria; Hockenberry, Alyson; Keel, Christoph; Keppler, Andreas; Lee, Soon-Jae; Luneau, Julien; Malfertheiner, Lukas; Mitri, Sara; Ngyuen, Bidong; Oftadeh, Omid; Pacheco, Alan R.; Peaudecerf, Francois; Resch, Gregory; Ruscheweyh, Hans-Joachim; Sahin, Asli; Sanders, Ian R.; Slack, Emma; Sunagawa, Shinichi; Tackmann, Janko; Tecon, Robin; Ugolini, Giovanni Stefano; Vacheron, Jordan; van der Meer, Jan Roelof; Vayena, Evangelia; Vonaesch, Pascale; Vorholt, Julia A.
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Research Directions

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Co-authors
Cooperation Journals
P
Peer Bork
H-index: 233 · Papers: 946
P
Peer Bork
H-index: 233 · Papers: 948
王
王军 (Jun Wang)
H-index: 222 · Papers: 3.2K
W
Willem M. de Vos
H-index: 193 · Papers: 1.3K
C
Carlos M. Duarte
H-index: 177 · Papers: 1.8K
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