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Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome (vol 5, e0046520, 2020) Taylor, Bryn C.; Weldon, Kelly C.; Ellis, Ronald J.; Franklin, Donald; Groth, Tobin; Gentry, Emily C.; Tripathi, Anupriya; Mcdonald, Daniel; Humphrey, Gregory; Bryant, Mackenzie; Toronczak, Julia; Schwartz, Tara; Oliveira, Michelli F.; Heaton, Robert; Grant, Igor; Gianella, Sara; Letendre, Scott; Swafford, Austin; Dorrestein, Pieter C.; Knight, Rob Share Save
Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload Nonejuie, Poochit; Wilantho, Alisa; McDonald, Daniel; Htoo, Htut Htut; Chalerm, Jenjira; Tripathi, Anupriya; Ngamphiw, Chumpol; Tongsima, Sissades; Knight, Rob; Paiboonsukwong, Kittiphong; Fucharoen, Suthat Share Save
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Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort (vol 54, pg 134, 2022) Qin, Youwen; Havulinna, Aki S.; Liu, Yang; Jousilahti, Pekka; Ritchie, Scott C.; Tokolyi, Alex; Sanders, Jon G.; Valsta, Liisa; Brozynska, Marta; Zhu, Qiyun; Tripathi, Anupriya; Vazquez-Baeza, Yoshiki; Loomba, Rohit; Cheng, Susan; Jain, Mohit; Niiranen, Teemu; Lahti, Leo; Knight, Rob; Salomaa, Veikko; Inouye, Michael; Meric, Guillaume Share Save
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Jr Kenneth P.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. Share Save
Paired microbiome and metabolome analyses associate bile acid changes with colorectal cancer progression Fu, Ting; Huan, Tao; Rahman, Gibraan; Zhi, Hui; Xu, Zhenjiang; Oh, Tae Gyu; Guo, Jian; Coulter, Sally; Tripathi, Anupriya; Martino, Cameron; Mccarville, Justin L.; Zhu, Qiyun; Cayabyab, Fritz; Low, Brian; He, Mingxiao; Xing, Shipei; Vargas, Fernando; Yu, Ruth T.; Atkins, Annette; Liddle, Christopher; Ayres, Janelle; Raffatellu, Manuela; Dorrestein, Pieter C.; Downes, Michael; Knight, Rob; Evans, Ronald M. Share Save
Discovery of plasma protein biomarkers associated with overall survival in R/R DLBCL patients treated with loncastuximab tesirine Vallania, Francesco; Cheung, Victoria; Tripathi, Anupriya; Louie, Maggie; Snyder, Thomas; Lin, Jimmy; Havenith, Karin; Qin, Yajuan; Pantano, Serafino; Wuerthner, Jens; van Berkel, Patrick H. Share Save
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Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis Coras, Roxana; Martino, Cameron; Gauglitz, Julia M.; Cedola, Francesca; Tripathi, Anupriya; Jarmusch, Alan K.; Alharthi, Maram; Fernandez-Bustamante, Marta; Agustin-Perez, Meritxell; Singh, Abha; Choi, Soo-In; Rivera, Tania; Nguyen, Katherine; Shekhtman, Tatyana; Holt, Tiffany; Lee, Susan; Golshan, Shahrokh; Dorrestein, Pieter C.; Knight, Rob; Guma, Monica Share Save
Enhancing untargeted metabolomics using metadata-based source annotation Gauglitz, Julia M.; West, Kiana A.; Bittremieux, Wout; Williams, Candace L.; Weldon, Kelly C.; Panitchpakdi, Morgan; Di Ottavio, Francesca; Aceves, Christine M.; Brown, Elizabeth; Sikora, Nicole C.; Jarmusch, Alan K.; Martino, Cameron; Tripathi, Anupriya; Meehan, Michael J.; Dorrestein, Kathleen; Shaffer, Justin P.; Coras, Roxana; Vargas, Fernando; Goldasich, Lindsay DeRight; Schwartz, Tara; Bryant, MacKenzie; Humphrey, Gregory; Johnson, Abigail J.; Spengler, Katharina; Belda-Ferre, Pedro; Diaz, Edgar; McDonald, Daniel; Zhu, Qiyun; Elijah, Emmanuel O.; Wang, Mingxun; Marotz, Clarisse; Sprecher, Kate E.; Vargas-Robles, Daniela; Withrow, Dana; Ackermann, Gail; Herrera, Lourdes; Bradford, Barry J.; Marques, Lucas Maciel Mauriz; Amaral, Juliano Geraldo; Silva, Rodrigo Moreira; Veras, Flavio Protasio; Cunha, Thiago Mattar; Oliveira, Rene Donizeti Ribeiro; Louzada-Junior, Paulo; Mills, Robert H.; Piotrowski, Paulina K.; Servetas, Stephanie L.; Da Silva, Sandra M.; Jones, Christina M.; Lin, Nancy J.; Lippa, Katrice A.; Jackson, Scott A.; Daouk, Rima Kaddurah; Galasko, Douglas; Dulai, Parambir S.; Kalashnikova, Tatyana I.; Wittenberg, Curt; Terkeltaub, Robert; Doty, Megan M.; Kim, Jae H.; Rhee, Kyung E.; Beauchamp-Walters, Julia; Wright, Kenneth P., Jr.; Dominguez-Bello, Maria Gloria; Manary, Mark; Oliveira, Michelli F.; Boland, Brigid S.; Lopes, Norberto Peporine; Guma, Monica; Swafford, Austin D.; Dutton, Rachel J.; Knight, Rob; Dorrestein, Pieter C. Share Save
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting Liu, Yang; Meric, Guillaume; Havulinna, Aki S.; Teo, Shu Mei; Aberg, Fredrik; Ruuskanen, Matti; Sanders, Jon; Zhu, Qiyun; Tripathi, Anupriya; Verspoor, Karin; Cheng, Susan; Jain, Mohit; Jousilahti, Pekka; Vazquez-Baeza, Yoshiki; Loomba, Rohit; Lahti, Leo; Niiranen, Teemu; Salomaa, Veikko; Knight, Rob; Inouye, Michael Share Save
Salivary bacterial signatures in depression-obesity comorbidity are associated with neurotransmitters and neuroactive dipeptides Aleti, Gajender; Kohn, Jordan N.; Troyer, Emily A.; Weldon, Kelly; Huang, Shi; Tripathi, Anupriya; Dorrestein, Pieter C.; Swafford, Austin D.; Knight, Rob; Hong, Suzi Share Save
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort Qin, Youwen; Havulinna, Aki S.; Liu, Yang; Jousilahti, Pekka; Ritchie, Scott C.; Tokolyi, Alex; Sanders, Jon G.; Valsta, Liisa; Brozynska, Marta; Zhu, Qiyun; Tripathi, Anupriya; Vazquez-Baeza, Yoshiki; Loomba, Rohit; Cheng, Susan; Jain, Mohit; Niiranen, Teemu; Lahti, Leo; Knight, Rob; Salomaa, Veikko; Inouye, Michael; Meric, Guillaume Share Save
Chemical Gradients of Plant Substrates in an Atta texana Fungus Garden Caraballo-Rodriguez, Andres Mauricio; Puckett, Sara P.; Kyle, Kathleen E.; Petras, Daniel; da Silva, Ricardo; Nothias, Louis-Felix; Ernst, Madeleine; van der Hooft, Justin J. J.; Tripathi, Anupriya; Wang, Mingxun; Balunas, Marcy J.; Klassen, Jonathan L.; Dorrestein, Pieter C. Share Save
Intermittent Hypoxia and Hypercapnia Alter Diurnal Rhythms of Luminal Gut Microbiome and Metabolome Allaband, Celeste; Lingaraju, Amulya; Martino, Cameron; Russell, Baylee; Tripathi, Anupriya; Poulsen, Orit; Machado, Ana Carolina Dantas; Zhou, Dan; Xue, Jin; Elijah, Emmanuel; Malhotra, Atul; Dorrestein, Pieter C.; Knight, Rob; Haddad, Gabriel G.; Zarrinpar, Amir Share Save
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets Cantrell, Kalen; Fedarko, Marcus W.; Rahman, Gibraan; McDonald, Daniel; Yang, Yimeng; Zaw, Thant; Gonzalez, Antonio; Janssen, Stefan; Estaki, Mehrbod; Haiminen, Niina; Beck, Kristen L.; Zhu, Qiyun; Sayyari, Erfan; Morton, James T.; Armstrong, George; Tripathi, Anupriya; Gauglitz, Julia M.; Marotz, Clarisse; Matteson, Nathaniel L.; Martino, Cameron; Sanders, Jon G.; Carrieri, Anna Paola; Song, Se Jin; Swafford, Austin D.; Dorrestein, Pieter C.; Andersen, Kristian G.; Parida, Laxmi; Kim, Ho-Cheol; Vazquez-Baeza, Yoshiki; Knight, Rob Share Save
Influence of Intermittent Hypoxia/Hypercapnia on Atherosclerosis, Gut Microbiome, and Metabolome Xue, Jin; Allaband, Celeste; Zhou, Dan; Poulsen, Orit; Martino, Cameron; Jiang, Lingjing; Tripathi, Anupriya; Elijah, Emmanuel; Dorrestein, Pieter C.; Knight, Rob; Zarrinpar, Amir; Haddad, Gabriel G. Share Save
Links between gut microbiome composition and fatty liver disease in a large population sample Ruuskanen, Matti O.; Aberg, Fredrik; Mannisto, Ville; Havulinna, Aki S.; Meric, Guillaume; Liu, Yang; Loomba, Rohit; Vazquez-Baeza, Yoshiki; Tripathi, Anupriya; Valsta, Liisa M.; Inouye, Michael; Jousilahti, Pekka; Salomaa, Veikko; Jain, Mohit; Knight, Rob; Lahti, Leo; Niiranen, Teemu J. Share Save
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