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J

José R. Penadés

imperial college london

63H-index
177Paper Count
1.4WCitation Count
Published Papers 69
Publication Date
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Revisiting the life cycle of temperate phages
errNature Reviews Microbiology
IF103.3
err2026-05-20
err0
PREAI
errJakob T. Rostøl; Cora Chmielowska; Alberto Marina; José R. Penadés
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Accelerating scientific discovery with Co-Scientist
errNature
IF48.5
err2026-05-19
err0
PREAI
errJuraj Gottweis; Wei-Hung Weng; Alexander Daryin; Tao Tu; Petar Sirkovic; Artiom Myaskovsky; Grzegorz Glowaty; Felix Weissenberger; Alessio Orlandi; Dan Popovici; Anil Palepu; Keran Rong; Ryutaro Tanno; Khaled Saab; Fan Zhang; Jacob Blum; Andrew Carroll; Kavita Kulkarni; Nenad Tomašev; Dina Zverinski; Ivor Rendulic; Elahe Vedadi; Florian Hasler; Luka Rimanic; Marina Boia; Ivan Budiselic; Ben Feinstein; Mathias Bellaiche; Tom Sheffer; Jan Freyberg; Jeremy Ratcliff; Ottavia Bertolli; Katherine Chou; Avinatan Hassidim; Burak Gokturk; Amin Vahdat; Yuan Guan; Vikram Dhillon; Eeshit Dhaval Vaishnav; Byron Lee; Tiago R. D. Costa; José R. Penadés; Gary Peltz; Yossi Matias; James Manyika; Demis Hassabis; Yunhan Xu; Pushmeet Kohli; Annalisa Pawlosky; Alan Karthikesalingam; Vivek Natarajan
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Immune-deficient bacteria serve as gateways to genetic exchange and microbial evolution
errNature Communications
IF15.7
err2026-04-01
err0
errOAAI
errWendy Figueroa; Akshay Sabnis; Rodrigo Ibarra-Chávez; Jamie Gorzynski; J. Ross Fitzgerald; José R. Penadés
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errSave
Bacteriophages mobilize bacterial defense systems via lateral transduction
errScience Advances
IF12.5
err2026-01-23
err0
errOAAI
errXu Kuang; Jamie Gorzynski; Marie Touchon; Andrey Shkoporov; Eduardo P. C. Rocha; J. Ross Fitzgerald; John Chen; Jakob T. Rostøl; José R. Penadés
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Non-conjugative plasmids limit their mobility to persist in nature
errCell Reports
IF6.9
err2025-10-22
err0
errOAAI
errAkshay Sabnis; Wendy Figueroa; Alfonso Santos-López; Jonathan Bradshaw; Melissa-Jane Chu Yuan Kee; John Chen; Álvaro San Millán; José R. Penadés
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Chimeric infective particles expand species boundaries in phage-inducible chromosomal island mobilization
errCell
IF42.5
err2025-09-09
err0
errOAAI
errLingchen He; Jonasz B. Patkowski; Jinlong Wang; Laura Miguel-Romero; Christopher H.S. Aylett; Alfred Fillol-Salom; Tiago R.D. Costa; José R. Penadés
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errSave
AI mirrors experimental science to uncover a mechanism of gene transfer crucial to bacterial evolution
errCell
IF42.5
err2025-09-09
err0
errOAAI
errJosé R. Penadés; Juraj Gottweis; Lingchen He; Jonasz B. Patkowski; Alexander Daryin; Wei-Hung Weng; Tao Tu; Anil Palepu; Artiom Myaskovsky; Annalisa Pawlosky; Vivek Natarajan; Alan Karthikesalingam; Tiago R.D. Costa
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errSave
Genetics, ecology and evolution of phage satellites
errNATURE REVIEWS MICROBIOLOGY
IF103.3
err2025-03-27
err0
PREAI
errPenades, Jose R.; Seed, Kimberley D.; Chen, John; Bikard, David; Rocha, Eduardo P. C.
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Tackling coinfections
errTRENDS IN MICROBIOLOGY
IF14.9
err2024-12-01
err0
errOAAI
errBrown, Gordon D.; Murcia, Pablo R.; Waters, Andrew P.; Penades, Jose; Munoz, Alberto
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errSave
Phage-host co-evolution has led to distinct generalized transduction strategies
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-06-17
err0
errOAAI
errWolput, Sanne; Lood, Cedric; Fillol-Salom, Alfred; Casters, Yorben; Albasiony, Alaa; Cenens, William; Vanoirbeek, Kristof; Kerremans, Alison; Lavigne, Rob; Penades, Jose R.; Aertsen, Abram
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The ClpX protease is essential for inactivating the CI master repressor and completing prophage induction in Staphylococcus aureus
errNATURE COMMUNICATIONS
IF15.7
err2023-10-18
err3
errOAAI
errThabet, Mohammed A.; Penades, Jose R.; Haag, Andreas F.
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errSave
Phage-Inducible Chromosomal Islands as a Diagnostic Platform to Capture and Detect Bacterial Pathogens
errADVANCED SCIENCE
IF14.1
err2023-06-26
err5
errOAAI
errIbarra-Chavez, Rodrigo; Reboud, Julien; Penades, Jose R.; Cooper, Jonathan M.
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errSave
Evolutionary and functional history of the Escherichia coli K1 capsule
errNATURE COMMUNICATIONS
IF15.7
err2023-06-15
err12
errOAAI
errArredondo-Alonso, Sergio; Blundell-Hunter, George; Fu, Zuyi; Gladstone, Rebecca A.; Fillol-Salom, Alfred; Loraine, Jessica; Cloutman-Green, Elaine; Johnsen, Pal J.; Samuelsen, Orjan; Poentinen, Anna K.; Cleon, Francois; Chavez-Bueno, Susana; De la Cruz, Miguel A.; Ares, Miguel A.; Vongsouvath, Manivanh; Chmielarczyk, Agnieszka; Horner, Carolyne; Klein, Nigel; McNally, Alan; Reis, Joice N.; Penades, Jose R.; Thomson, Nicholas R.; Corander, Jukka; Taylor, Peter W.; McCarthy, Alex J.
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errSave
Identification and characterization of thousands of bacteriophage satellites across bacteria
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-03-03
err22
errOAAI
errde Sousa, Jorge A. Moura; Fillol-Salom, Alfred; Penades, Jose R.; Rocha, Eduardo P. C.
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The Bacteriophage-Phage-Inducible Chromosomal Island Arms Race Designs an Interkingdom Inhibitor of dUTPases
errMICROBIOLOGY SPECTRUM
IF3.8
err2023-02-14
err3
errOAAI
errSanz-Frasquet, Carla; Rafael Ciges-Tomas, J.; Alite, Christian; Penades, Jose R.; Marina, Alberto
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errSave
Non-canonical Staphylococcus aureus pathogenicity island repression
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-10-06
err4
errOAAI
errMiguel-Romero, Laura; Alqasmi, Mohammed; Bacarizo, Julio; Tan, Jason A.; Cogdell, Richard J.; Chen, John; Byron, Olwyn; Christie, Gail E.; Marina, Alberto; Penades, Jose R.
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errSave
Insights into the mechanism of action of the arbitrium communication system in SPbeta phages
errNATURE COMMUNICATIONS
IF15.7
err2022-06-24
err8
errOAAI
errGallego del Sol, Francisca; Quiles-Puchalt, Nuria; Brady, Aisling; Penades, Jose R.; Marina, Alberto
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Phage-inducible chromosomal islands promote genetic variability by blocking phage reproduction and protecting transductants from phage lysis
errPLOS GENETICS
IF3.7
err2022-03-28
err16
errOAAI
errIbarra-Chavez, Rodrigo; Brady, Aisling; Chen, John; Penades, Jose R.; Haag, Andreas F.
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errSave
Lateral transduction is inherent to the life cycle of the archetypical Salmonella phage P22
errNATURE COMMUNICATIONS
IF15.7
err2021-11-08
err34
errOAAI
errFillol-Salom, Alfred; Bacigalupe, Rodrigo; Humphrey, Suzanne; Chiang, Yin Ning; Chen, John; Penades, Jose R.
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errSave
Bacterial chromosomal mobility via lateral transduction exceeds that of classical mobile genetic elements
errNATURE COMMUNICATIONS
IF15.7
err2021-11-08
err46
errOAAI
errHumphrey, Suzanne; Fillol-Salom, Alfred; Quiles-Puchalt, Nuria; Ibarra-Chavez, Rodrigo; Haag, Andreas F.; Chen, John; Penades, Jose R.
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Research Directions

No research directions
Co-authors
Cooperation Journals
A
Andrew Rambaut
H-index: 150 · Papers: 521
R
Richard P. Novick
H-index: 103 · Papers: 326
G
Gordon D. Brown
H-index: 103 · Papers: 306
P
Pushmeet Kohli
H-index: 99 · Papers: 431
T
T Gingeras
H-index: 99 · Papers: 1.0K
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