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Patrick Chain

los alamos national laboratory

76H-index
546Paper Count
5.6WCitation Count
Published Papers 95
Publication Date
PRIME: An evaluation framework for protein representation inference and generalization in viral mutation space
err2026-05-30
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errKaetlyn Gibson; Po-E Li; Valerie Li; Martha Dix; Li-Wei Hung; George Widgery Stelle; Michal Babinski; Patrick Chain; Bin Hu
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Methods for safely sharing dual-use genetic data
err2026-02-11
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errOAAI
errSterling Sawaya; Chien-Chi Lo; Po-E Li; Blake Hovde; Patrick Chain
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Genomic-based biosurveillance for avian influenza: whole genome sequencing from wild mallards sampled during autumn migration in 2022–2023 reveals a high co-infection rate on migration stopover site in Georgia
err2026-01-28
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errAna Papkiauri; Lela Urushadze; Tea Tevdoradze; Ketevan Sidamonidze; Giorgi Tomashvili; Mari Gavashelidze; Levan Ninua; Ivane Daraselia; Sopio Kiknavelidze; Nika Melikishvili; Bin Hu; Patrick Chain; Kaetlyn Gibson; Martha Dix; Valerie Li; Jeanne Fair; Jennifer Owen; Zurab Javakhishvili
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STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
err2025-12-01
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PREAI
errJulia M. Kelliher; Chloe Mirzayi; Sarah R. Bordenstein; Aaron Oliver; Christina A. Kellogg; Eneida L. Hatcher; Maureen Berg; Petr Baldrian; Mashael Aljumaah; Cassandra Maria Luz Miller; Christopher Mungall; Vlastimil Novak; Alexis Palucki; Ethan Smith; Nazifa Tabassum; Gregory Bonito; J. Rodney Brister; Patrick S. G. Chain; Mingfei Chen; Samuel Degregori; Jose Pablo Dundore-Arias; Joanne B. Emerson; Vanessa Moreira C. Fernandes; Roberto Flores; Antonio Gonzalez; Zoe A. Hansen; Scott A. Jackson; Ahmed M. Moustafa; Trent R. Northen; Nonia Pariente; Jennifer Pett-Ridge; Sydne Record; Linta Reji; Anna-Louise Reysenbach; Virginia I. Rich; Lorna Richardson; Simon Roux; Lynn M. Schriml; Reed S. Shabman; Maria A. Sierra; Matthew B. Sullivan; Punithavathi Sundaramurthy; Katherine M. Thibault; Luke R. Thompson; Scott Tighe; Ethell Vereen; Emiley A. Eloe-Fadrosh
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Detection of electrical signals in fungal mycelia in response to external stimuli
err2025-09-02
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errMatteo Buffi; Silvia Giangaspero; Valerio Foiada; Loïc Puthod; Guillaume Cailleau; Aaron J. Robinson; Julia M. Kelliher; Patrick S.G. Chain; Daniel Oberson; Markus Künzler; Saskia Bindschedler; Lorenzo Pirrami; Pilar Junier
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Aerosol biome of a cafeteria and medical facility in Los Alamos, New Mexico, USA
err2025-09-01
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errMartinez, Andreas; Ruth, Nelson; Hatch, Andrew; Chain, Patrick; Shakya, Migun
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Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae
err2025-08-05
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PREAI
errGregory Bonito; Shingo Miyauchi; Richard D. Hayes; Hao Tan; Alan Kuo; Aaron Robinson; Xinxin Wang; Jud Van Wyk; Annegret Kohler; Laure Fauchery; Elodie Drula; Gian Maria Niccolò Benucci; Emmanuelle Morin; Martin Ryberg; Faheema Kalsoom Khan; Melissa Cravero; Reid Longley; Kerrie Barry; Alicia Clum; Kecia Duffy; Anna Lipzen; Kurt LaButti; Robert Riley; Vasanth Singan; Andrei Steindorff; Jie Wang; Tom Bruns; Sundy Maurice; Philippe Clowez; Saskia Bindschedler; Pilar Junier; Patrick Chain; Igor V. Grigoriev; Francis M. Martin
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Electrical signaling in fungi: past and present challenges
err2025-03-21
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PREAI
errBuffi, Matteo; Kelliher, Julia M.; Robinson, Aaron J.; Gonzalez, Diego; Cailleau, Guillaume; Macalindong, Justine A.; Frau, Eleonora; Schintke, Silvia; Chain, Patrick S. G.; Stanley, Claire E.; Kuenzler, Markus; Bindschedler, Saskia; Junier, Pilar
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Impact of Oxalic Acid Consumption and pH on the In Vitro Biological Control of Oxalogenic Phytopathogen Sclerotinia sclerotiorum
err2025-03-02
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errOAAI
errEstoppey, Aislinn; Vallat-Michel, Armelle; Chain, Patrick S.; Bindschedler, Saskia
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Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
err2025-02-21
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errTao, Gang; Ahrendt, Steven; Miyauchi, Shingo; Zhu, Xiaojie; Peng, Hao; Labutti, Kurt; Clum, Alicia; Hayes, Richard; Chain, Patrick S. G.; Grigoriev, Igor, V; Bonito, Gregory; Martin, Francis M.
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Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes (Vol 9, no. 9, e00309-24, 2024)
errMSPHERE
IF3.1
err2024-12-19
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errLongley, Reid; Robinson, Aaron J.; Asher, Olivia A.; Middlebrook, Earl; Bonito, Gregory; Chain, Patrick S. G.
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Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes
errMSPHERE
IF3.1
err2024-09-25
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errOAAI
errLongley, Reid; Robinson, Aaron J.; Asher, Olivia A.; Middlebrook, Earl; Bonito, Gregory; Chain, Patrick S. G.
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Fabricated devices for performing bacterial-fungal interaction experiments across scales
err2024-08-07
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errOAAI
errKelliher, Julia M.; Johnson, Leah Y. D.; Robinson, Aaron J.; Longley, Reid; Hanson, Buck T.; Cailleau, Guillaume; Bindschedler, Saskia; Junier, Pilar; Chain, Patrick S. G.
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Combining compositional data sets introduces error in covariance network reconstruction
err2024-04-19
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errOAAI
errBrunner, James D.; Robinson, Aaron J.; Chain, Patrick S. G.
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Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows
err2024-03-11
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errConnor, Ryan; Shakya, Migun; Yarmosh, David A.; Maier, Wolfgang; Martin, Ross; Bradford, Rebecca; Brister, J. Rodney; Chain, Patrick S. G.; Copeland, Courtney A.; di Iulio, Julia; Hu, Bin; Ebert, Philip; Gunti, Jonathan; Jin, Yumi; Katz, Kenneth S.; Kochergin, Andrey; LaRosa, Tre; Li, Jiani; Li, Po-E; Lo, Chien-Chi; Rashid, Sujatha; Maiorova, Evguenia S.; Xiao, Chunlin; Zalunin, Vadim; Purcell, Lisa; Pruitt, Kim D.
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Bridging Place-Based Astrobiology Education with Genomics, Including Descriptions of Three Novel Bacterial Species Isolated from Mars Analog Sites of Cultural Relevance
err2023-12-01
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errPrescott, Rebecca D.; Chan, Yvonne L.; Tong, Eric J.; Bunn, Fiona; Onouye, Chiyoko T.; Handel, Christy; Lo, Chien-Chi; Davenport, Karen; Johnson, Shannon; Flynn, Mark; Saito, Jennifer A.; Lee, Herb, Jr.; Wong, Kaleomanuiwa; Lawson, Brittany N.; Hiura, Kayla; Sager, Kailey; Sadones, Mia; Hill, Ethan C.; Esibill, Derek; Cockell, Charles S.; Santomartino, Rosa; Chain, Patrick S. G.; Decho, Alan W.; Donachie, Stuart P.
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Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California
err2023-11-18
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errCarter, Michelle Qiu; Quinones, Beatriz; He, Xiaohua; Pham, Antares; Carychao, Diana; Cooley, Michael B.; Lo, Chien-Chi; Chain, Patrick S. G.; Lindsey, Rebecca L.; Bono, James L.
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Identification of mobile genetic elements with geNomad
err2023-09-21
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errCamargo, Antonio Pedro; Roux, Simon; Schulz, Frederik; Babinski, Michal; Xu, Yan; Hu, Bin; Chain, Patrick S. G.; Nayfach, Stephen; Kyrpides, Nikos C.
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Metabolic versatility of Caldarchaeales from geothermal features of Hawai'i and Chile as revealed by five metagenome-assembled genomes
err2023-09-20
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errBalbay, Manolya Gul; Shlafstein, Maximillian D.; Cockell, Charles; Cady, Sherry L.; Prescott, Rebecca D.; Lim, Darlene S. S.; Chain, Patrick S. G.; Donachie, Stuart P.; Decho, Alan W.; Saw, Jimmy H.
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Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi
err2023-09-18
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errLongley, Reid; Robinson, Aaron; Liber, Julian A.; Bryson, Abigail E.; Morales, Demosthenes P.; Labutti, Kurt; Riley, Robert; Mondo, Stephen J.; Kuo, Alan; Yoshinaga, Yuko; Daum, Chris; Barry, Kerrie; Grigoriev, Igor V.; Desiro, Alessandro; Chain, Patrick S. G.; Bonito, Gregory
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