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K

Karsten Borgwardt

max planck society

60H-index
267Paper Count
2.4WCitation Count
Published Papers 41
Publication Date
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Early detection of ampicillin susceptibility in Enterococcus faecium with MALDI-TOF/MS and machine learning
errJournal of Global Antimicrobial Resistance
IF3.2
err2026-04-01
err0
errOAAI
errPichl, Thomas; Miranda, Lucas; Warkotsch, Matthias T.; Wantia, Nina; Borgwardt, Karsten; Sattler, Janko
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errSave
Automated Discovery of Reactive Events via Hypergraph Mining of Ab Initio Atomistic Simulations
errJournal of Chemical Theory and Computation
IF5.5
err2026-02-12
err0
errOAAI
errAlexandra Stan-Bernhardt; Paolo Pellizzoni; Karsten Borgwardt; Christian Ochsenfeld
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errSave
Circulation of polyclonal OXA-244-producing Escherichia coli lineages in Jerusalem, Israel
errJAC-ANTIMICROBIAL RESISTANCE
IF3.3
err2025-12-01
err0
errOAAI
errSattler, Janko; Oster, Yonatan; Seth Smith, Helena M. B.; Gutlin, Yukino; Michael-Gayego, Ayelet; Reshef, Dan; Temper, Violeta; Borgwardt, Karsten; Egli, Adrian; Strahilevitz, Jacob; Moran-Gilad, Jacob
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errSave
Conformal Prediction with Knowledge Graphs for Reliable Antimicrobial Resistance Detection with MALDI-TOF Mass Spectra
errJOURNAL OF COMPUTATIONAL BIOLOGY
IF1.6
err2025-12-01
err1
PREAI
errCorvelo Benz, Nina; Miranda, Lucas; Chen, Dexiong; Sattler, Janko; Borgwardt, Karsten
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errSave
Endowing protein language models with structural knowledge
errBIOINFORMATICS
IF5.4
err2025-11-01
err0
errOAAI
errHartout, Philip; Chen, Dexiong; Pellizzoni, Paolo; Oliver, Carlos; Borgwardt, Karsten
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errSave
Predicting sequence-specific amplification efficiency in multi-template PCR with deep learning
errNature Communications
IF15.7
err2025-10-16
err0
errOAAI
errAndreas L. Gimpel; Bowen Fan; Dexiong Chen; Laetitia O. D. Wölfle; Max Horn; Laetitia Meng-Papaxanthos; Philipp L. Antkowiak; Wendelin J. Stark; Beat Christen; Karsten Borgwardt; Robert N. Grass
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errSave
ESCMID workshop: Artificial Intelligence and Machine Learning in Medical Microbiology Diagnostics
errMicrobes and Infection
IF2.7
err2025-09-05
err0
errOAAI
errMariella Greutmann; Karsten Borgwardt; Sarah Brüningk; Fabian Franzeck; Christian G. Giske; Anna G. Green; Alejandro Guerrero-López; Margaret Ip; Catherine Jutzeler; Andre Kahles; Michael Krauthammer; Nenad Macesic; Benjamin McFadden; Eline Meijer; Nathan Moore; Jacob Moran-Gilad; Imane Lboukili; Oliver Nolte; Robin Patel; Gerold Schneider; Markus A. Seeger; Tavpritesh Sethi; Robert L. Skov; Chang Ho Yoon; Belén Rodríguez-Sánchez; Adrian Egli
errShare
errSave
ISMB/ECCB 2025 Proceedings
errBIOINFORMATICS
IF5.4
err2025-07-01
err0
errOAAI
errBorgwardt, Karsten; Milenkovic, Tijana
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errSave
Enhancing the diagnosis of functionally relevant coronary artery disease with machine learning
errNATURE COMMUNICATIONS
IF15.7
err2024-06-12
err0
errOAAI
errBock, Christian; Walter, Joan Elias; Rieck, Bastian; Strebel, Ivo; Rumora, Klara; Schaefer, Ibrahim; Zellweger, Michael J.; Borgwardt, Karsten; Mueller, Christian
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errSave
DeePhys: A machine learning-assisted platform for electrophysiological phenotyping of human neuronal networks
errSTEM CELL REPORTS
IF5.1
err2024-02-01
err1
errOAAI
errHornauer, Philipp; Prack, Gustavo; Anastasi, Nadia; Ronchi, Silvia; Kim, Taehoon; Donner, Christian; Fiscella, Michele; Borgwardt, Karsten; Jagasia, Ravi; Taylor, Verdon; Roqueiro, Damian; Hierlemann, Andreas; Schroter, Manuel
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errSave
Predicting sepsis using deep learning across international sites: a and validation
errECLINICALMEDICINE
IF10
err2023-08-01
err13
errOAAI
errMoor, Michael; Bennett, Nicolas; Plecko, Drago; Horn, Max; Rieck, Bastian; Meinshausen, Nicolai; Buhlmann, Peter; Borgwardt, Karsten
errShare
errSave
Determinants of SARS-CoV-2 transmission to guide vaccination strategy in an urban area
errVIRUS EVOLUTION
IF4
err2022-03-17
err5
errOAAI
errBruningk, Sarah C.; Klatt, Juliane; Stange, Madlen; Mari, Alfredo; Brunner, Myrta; Roloff, Tim-Christoph; Seth-Smith, Helena M. B.; Schweitzer, Michael; Leuzinger, Karoline; Sogaard, Kirstine K.; Torres, Diana Albertos; Gensch, Alexander; Schlotterbeck, Ann-Kathrin; Nickel, Christian H.; Ritz, Nicole; Heininger, Ulrich; Bielicki, Julia; Rentsch, Katharina; Fuchs, Simon; Bingisser, Roland; Siegemund, Martin; Pargger, Hans; Ciardo, Diana; Dubuis, Olivier; Buser, Andreas; Tschudin-Sutter, Sarah; Battegay, Manuel; Schneider-Sliwa, Rita; Borgwardt, Karsten M.; Hirsch, Hans H.; Egli, Adrian
errShare
errSave
Direct antimicrobial resistance prediction from clinical MALDI-TOF mass spectra using machine learning
errNATURE MEDICINE
IF50
err2022-01-10
err90
errOAAI
errWeis, Caroline; Cuenod, Aline; Rieck, Bastian; Llinares-Lopez, Felipe; Dubuis, Olivier; Graf, Susanne; Lang, Claudia; Oberle, Michael; Brackmann, Maximilian; Sogaard, Kirstine K.; Osthoff, Michael; Borgwardt, Karsten; Egli, Adrian
errShare
errSave
RNA atlas of human bacterial pathogens uncovers stress dynamics linked to infection
errNATURE COMMUNICATIONS
IF15.7
err2021-06-02
err31
errOAAI
errAvican, Kemal; Aldandooh, Jehad; Togninalli, Matteo; Mahmud, A. K. M. Firoj; Tang, Jing; Borgwardt, Karsten M.; Rhen, Mikael; Fallman, Maria
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errSave
Early Prediction of Sepsis in the ICU Using Machine Learning: A Systematic Review
errFRONTIERS IN MEDICINE
IF3
err2021-05-28
err83
errOAAI
errMoor, Michael; Rieck, Bastian; Horn, Max; Jutzeler, Catherine R.; Borgwardt, Karsten
errShare
errSave
Biological network analysis with deep learning
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2020-11-10
err123
errOAAI
errMuzio, Giulia; O'Bray, Leslie; Borgwardt, Karsten
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errSave
Machine learning for microbial identification and antimicrobial susceptibility testing on MALDI-TOF mass spectra: a systematic review
errCLINICAL MICROBIOLOGY AND INFECTION
IF8.5
err2020-10-01
err101
errOAAI
errWeis, C., V; Jutzeler, C. R.; Borgwardt, K.
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errSave
Comorbidities, clinical signs and symptoms, laboratory findings, imaging features, treatment strategies, and outcomes in adult and pediatric patients with COVID-19: A systematic review and meta-analysis
errTRAVEL MEDICINE AND INFECTIOUS DISEASE
IF4.7
err2020-09-01
err110
errOAAI
errJutzeler, Catherine R.; Bourguignon, Lucie; Weis, Caroline, V; Tong, Bobo; Wong, Cyrus; Rieck, Bastian; Pargger, Hans; Tschudin-Sutter, Sarah; Egli, Adrian; Borgwardt, Karsten; Walter, Matthias
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errSave
Large-scale DNA-based phenotypic recording and deep learning enable highly accurate sequence-function mapping
errNATURE COMMUNICATIONS
IF15.7
err2020-07-15
err37
errOAAI
errHoellerer, Simon; Papaxanthos, Laetitia; Gumpinger, Anja Cathrin; Fischer, Katrin; Beisel, Christian; Borgwardt, Karsten; Benenson, Yaakov; Jeschek, Markus
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errSave
Early prediction of circulatory failure in the intensive care unit using machine learning
errNATURE MEDICINE
IF50
err2020-03-09
err227
errOAAI
errHyland, Stephanie L.; Faltys, Martin; Huser, Matthias; Lyu, Xinrui; Gumbsch, Thomas; Esteban, Cristobal; Bock, Christian; Horn, Max; Moor, Michael; Rieck, Bastian; Zimmermann, Marc; Bodenham, Dean; Borgwardt, Karsten; Ratsch, Gunnar; Merz, Tobias M.
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Research Directions

No research directions
Co-authors
Cooperation Journals
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Detlef Weigel
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Bernhard Schölkopf
H-index: 140 · Papers: 1.5K
J
Jordan W. Smoller
H-index: 130 · Papers: 884
C
Cathryn M. Lewis
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