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SaveA corpus of GA4GH phenopackets: Case-level phenotyping for genomic diagnostics and discovery
Danis, Daniel; Bamshad, Michael J.; Bridges, Yasemin; Caballero-Oteyza, Andres; Cacheiro, Pilar; Carmody, Leigh C.; Chimirri, Leonardo; Chong, Jessica X.; Coleman, Ben; Dalgleish, Raymond; Freeman, Peter J.; Graefe, Adam S. L.; Groza, Tudor; Hansen, Peter; Jacobsen, Julius O. B.; Klocperk, Adam; Kusters, Maaike; Ladewig, Markus S.; Marcello, Allison J.; Mattina, Teresa; Mungall, Christopher J.; Munoz-Torres, Monica C.; Reese, Justin T.; Rehburg, Filip; Reis, Barbara C. S.; Schuetz, Catharina; Smedley, Damian; Strauss, Timmy; Sundaramurthi, Jagadish Chandrabose; Thun, Sylvia; Wissink, Kyran; Wagstaff, John F.; Zocche, David; Haendel, Melissa A.; Robinson, Peter N. Share Save Share Save Association of post-COVID phenotypic manifestations with new-onset psychiatric diseaseColeman, Ben; Casiraghi, Elena; Callahan, Tiffany J.; Blau, Hannah; Chan, Lauren E.; Laraway, Bryan; Clark, Kevin B.; Re'em, Yochai; Gersing, Ken R.; Wilkins, Kenneth J.; Harris, Nomi L.; Valentini, Giorgio; Haendel, Melissa A.; Reese, Justin T.; Robinson, Peter N. Share Save The Human Phenotype Ontology in 2024: phenotypes around the worldGargano, Michael A.; Matentzoglu, Nicolas; Coleman, Ben; Addo-Lartey, Eunice B.; Anagnostopoulos, Anna, V; Anderton, Joel; Avillach, Paul; Bagley, Anita M.; Bakstein, Eduard; Balhoff, James P.; Baynam, Gareth; Bello, Susan M.; Berk, Michael; Bertram, Holli; Bishop, Somer; Blau, Hannah; Bodenstein, David F.; Botas, Pablo; Boztug, Kaan; Cady, Jolana; Callahan, Tiffany J.; Cameron, Rhiannon; Carbon, Seth J.; Castellanos, Francisco; Caufield, J. Harry; Chan, Lauren E.; Chute, Christopher G.; Cruz-Rojo, Jaime; Dahan-Oliel, Noemi; Davids, Jon R.; de Dieuleveult, Maud; de Souza, Vinicius; de Vries, Bert B. A.; de Vries, Esther; DePaulo, J. Raymond; Derfalvi, Beata; Dhombres, Ferdinand; Diaz-Byrd, Claudia; Dingemans, Alexander J. M.; Donadille, Bruno; Duyzend, Michael; Elfeky, Reem; Essaid, Shahim; Fabrizzi, Carolina; Fico, Giovanna; Firth, Helen, V; Freudenberg-Hua, Yun; Fullerton, Janice M.; Gabriel, Davera L.; Gilmour, Kimberly; Giordano, Jessica; Goes, Fernando S.; Moses, Rachel Gore; Green, Ian; Griese, Matthias; Groza, Tudor; Gu, Weihong; Guthrie, Julia; Gyori, Benjamin; Hamosh, Ada; Hanauer, Marc; Hanusova, Katerina; He, Yongqun (Oliver); Hegde, Harshad; Helbig, Ingo; Holasova, Katerina; Hoyt, Charles Tapley; Huang, Shangzhi; Hurwitz, Eric; Jacobsen, Julius O. B.; Jiang, Xiaofeng; Joseph, Lisa; Keramatian, Kamyar; King, Bryan; Knoflach, Katrin; Koolen, David A.; Kraus, Megan L.; Kroll, Carlo; Kusters, Maaike; Ladewig, Markus S.; Lagorce, David; Lai, Meng-Chuan; Lapunzina, Pablo; Laraway, Bryan; Lewis-Smith, David; Li, Xiarong; Lucano, Caterina; Majd, Marzieh; Marazita, Mary L.; Martinez-Glez, Victor; McHenry, Toby H.; McInnis, Melvin G.; McMurry, Julie A.; Mihulova, Michaela; Millett, Caitlin E.; Mitchell, Philip B.; Moslerova, Veronika; Narutomi, Kenji; Nematollahi, Shahrzad; Nevado, Julian; Nierenberg, Andrew A.; Cajbikova, Nikola Novak; Nurnberger, John I., Jr.; Ogishima, Soichi; Olson, Daniel; Ortiz, Abigail; Pachajoa, Harry; Perez de Nanclares, Guiomar; Peters, Amy; Putman, Tim; Rapp, Christina K.; Rath, Ana; Reese, Justin; Rekerle, Lauren; Roberts, Angharad M.; Roy, Suzy; Sanders, Stephan J.; Schuetz, Catharina; Schulte, Eva C.; Schulze, Thomas G.; Schwarz, Martin; Scott, Katie; Seelow, Dominik; Seitz, Berthold; Shen, Yiping; Similuk, Morgan N.; Simon, Eric S.; Singh, Balwinder; Smedley, Damian; Smith, Cynthia L.; Smolinsky, Jake T.; Sperry, Sarah; Stafford, Elizabeth; Stefancsik, Ray; Steinhaus, Robin; Strawbridge, Rebecca; Sundaramurthi, Jagadish Chandrabose; Talapova, Polina; Tenorio Castano, Jair A.; Tesner, Pavel; Thomas, Rhys H.; Thurm, Audrey; Turnovec, Marek; van Gijn, Marielle E.; Vasilevsky, Nicole A.; Vlckova, Marketa; Walden, Anita; Wang, Kai; Wapner, Ron; Ware, James S.; Wiafe, Addo A.; Wiafe, Samuel A.; Wiggins, Lisa D.; Williams, Andrew E.; Wu, Chen; Wyrwoll, Margot J.; Xiong, Hui; Yalin, Nefize; Yamamoto, Yasunori; Yatham, Lakshmi N.; Yocum, Anastasia K.; Young, Allan H.; Yueksel, Zafer; Zandi, Peter P.; Zankl, Andreas; Zarante, Ignacio; Zvolsky, Miroslav; Toro, Sabrina; Carmody, Leigh C.; Harris, Nomi L.; Munoz-Torres, Monica C.; Danis, Daniel; Mungall, Christopher J.; Koehler, Sebastian; Haendel, Melissa A.; Robinson, Peter N. Share Save A method for comparing multiple imputation techniques: A case study on the US national COVID cohort collaborativeCasiraghi, Elena; Wong, Rachel; Hall, Margaret; Coleman, Ben; Notaro, Marco; Evans, Michael D.; Tronieri, Jena S.; Blau, Hannah; Laraway, Bryan; Callahan, Tiffany J.; Chan, Lauren E.; Bramante, Carolyn T.; Buse, John B.; Moffitt, Richard A.; Sturmer, Til; Johnson, Steven G.; Shao, Yu Raymond; Reese, Justin; Robinson, Peter N.; Paccanaro, Alberto; Valentini, Giorgio; Huling, Jared D.; Wilkins, Kenneth J. Share Save Generalisable long COVID subtypes: Findings from the NIH N3C and RECOVER programmesReese, Justin T.; Blau, Hannah; Casiraghi, Elena; Bergquist, Timothy; Loomba, Johanna J.; Callahan, Tiffany J.; Laraway, Bryan; Antonescu, Corneliu; Coleman, Ben; Gargano, Michael; Wilkins, Kenneth J.; Cappelletti, Luca; Fontana, Tommaso; Ammar, Nariman; Antony, Blessy; Murali, T. M.; Caufield, J. Harry; Karlebach, Guy; McMurry, Julie A.; Williams, Andrew; Moffitt, Richard; Banerjee, Jineta; Solomonides, Anthony E.; Davis, Hannah; Kostka, Kristin; Valentini, Giorgio; Sahner, David; Chute, Christopher G.; Madlock-Brown, Charisse; Haendel, Melissa A.; Robinson, Peter N. Share Save Metformin is associated with reduced COVID-19 severity in patients with prediabetesChan, Lauren E.; Casiraghi, Elena; Laraway, Bryan; Coleman, Ben; Blau, Hannah; Zaman, Adnin; Harris, Nomi L.; Wilkins, Kenneth; Antony, Blessy; Gargano, Michael; Valentini, Giorgio; Sahner, David; Haendel, Melissa; Robinson, Peter N.; Bramante, Carolyn; Reese, Justin Share Save NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort studyReese, Justin T.; Coleman, Ben; Chan, Lauren; Blau, Hannah; Callahan, Tiffany J.; Cappelletti, Luca; Fontana, Tommaso; Bradwell, Katie Rebecca; Harris, Nomi L.; Casiraghi, Elena; Valentini, Giorgio; Karlebach, Guy; Deer, Rachel; McMurry, Julie A.; Haendel, Melissa A.; Chute, Christopher G.; Pfaff, Emily; Moffitt, Richard; Spratt, Heidi; Singh, Jasvinder; Mungall, Christopher J.; Williams, Andrew E.; Robinson, Peter N. Share Save Risk of new-onset psychiatric sequelae of COVID-19 in the early and late post-acute phaseColeman, Ben; Casiraghi, Elena; Blau, Hannah; Chan, Lauren; Haendel, Melissa A.; Laraway, Bryan; Callahan, Tiffany J.; Deer, Rachel R.; Wilkins, Kenneth J.; Reese, Justin; Robinson, Peter N. Share Save Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancerRavanmehr, Vida; Blau, Hannah; Cappelletti, Luca; Fontana, Tommaso; Carmody, Leigh; Coleman, Ben; George, Joshy; Reese, Justin; Joachimiak, Marcin; Bocci, Giovanni; Hansen, Peter; Bult, Carol; Rueter, Jens; Casiraghi, Elena; Valentini, Giorgio; Mungall, Christopher; Oprea, Tudor, I; Robinson, Peter N. Share Save Characterizing Long COVID: Deep Phenotype of a Complex ConditionDeer, Rachel R.; Rock, Madeline A.; Vasilevsky, Nicole; Carmody, Leigh; Rando, Halie; Anzalone, Alfred J.; Basson, Marc D.; Bennett, Tellen D.; Bergquist, Timothy; Boudreau, Eilis A.; Bramante, Carolyn T.; Byrd, James Brian; Callahan, Tiffany J.; Chan, Lauren E.; Chu, Haitao; Chute, Christopher G.; Coleman, Ben D.; Davis, Hannah E.; Gagnier, Joel; Greene, Casey S.; Hillegass, William B.; Kavuluru, Ramakanth; Kimble, Wesley D.; Koraishy, Farrukh M.; Kohler, Sebastian; Liang, Chen; Liu, Feifan; Liu, Hongfang; Madhira, Vithal; Madlock-Brown, Charisse R.; Matentzoglu, Nicolas; Mazzotti, Diego R.; McMurry, Julie A.; McNair, Douglas S.; Moffitt, Richard A.; Monteith, Teshamae S.; Parker, Ann M.; Perry, Mallory A.; Pfaff, Emily; Reese, Justin T.; Saltz, Joel; Schuff, Robert A.; Solomonides, Anthony E.; Solway, Julian; Spratt, Heidi; Stein, Gary S.; Sule, Anupam A.; Topaloglu, Umit; Vavougios, George D.; Wang, Liwei; Haendel, Melissa A.; Robinson, Peter N. 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