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J

Jef D. Boeke

new york university

117H-index
584Paper Count
6.3WCitation Count
Published Papers 202
Publication Date
Author Correction: Physiology and immunology of a pig-to-human decedent kidney xenotransplant
errNature
IF48.5
err2026-06-04
err0
PREAI
errRobert A. Montgomery; Jeffrey M. Stern; Farshid Fathi; Nathan Suek; Jacqueline I. Kim; Karen Khalil; Benjamin Vermette; Vasishta S. Tatapudi; Aprajita Mattoo; Edward Y. Skolnik; Ian S. Jaffe; Imad Aljabban; Tal Eitan; Shivani Bisen; Elaina P. Weldon; Valentin Goutaudier; Erwan Morgand; Fariza Mezine; Alessia Giarraputo; Idris Boudhabhay; Patrick Bruneval; Aurelie Sannier; Kevin Breen; Yasmeen S. Saad; Constanza Bay Muntnich; Simon H. Williams; Weimin Zhang; Larisa Kagermazova; Eloi Schmauch; Chandra Goparaju; Rebecca Dieter; Nikki Lawson; Amy Dandro; Ana Laura Fazio-Kroll; Lars Burdorf; David Ayares; Marc Lorber; Dorry Segev; Nicole Ali; David S. Goldfarb; Victoria Costa; Timothy Hilbert; Sapna A. Mehta; Ramin S. Herati; Harvey I. Pass; Ming Wu; Jef D. Boeke; Brendan Keating; Massimo Mangiola; Philip M. Sommer; Alexandre Loupy; Adam Griesemer; Megan Sykes
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Ancient co-option of LTR retrotransposons as yeast centromeres
errNature
IF48.5
err2026-02-18
err0
errOAAI
errMax A. B. Haase; Luciana Lazar-Stefanita; Lyam Baudry; Aleksandra Wudzinska; Xiaofan Zhou; Antonis Rokas; Chris Todd Hittinger; Boris Pfander; Andrea Musacchio; Jef D. Boeke
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Physiology and immunology of a pig-to-human decedent kidney xenotransplant (vol 650, pg 218, 2026)
errNature
IF48.5
err2026-02-01
err0
PREAI
errMontgomery, Robert A.; Stern, Jeffrey M.; Fathi, Farshid; Suek, Nathan; Kim, Jacqueline I.; Khalil, Karen; Vermette, Benjamin; Tatapudi, Vasishta S.; Mattoo, Aprajita; Skolnik, Edward Y.; Jaffe, Ian S.; Aljabban, Imad; Eitan, Tal; Bisen, Shivani; Weldon, Elaina P.; Goutaudier, Valentin; Morgand, Erwan; Mezine, Fariza; Giarraputo, Alessia; Boudhabhay, Idris; Bruneval, Patrick; Sannier, Aurelie; Breen, Kevin; Saad, Yasmeen S.; Muntnich, Constanza Bay; Williams, Simon H.; Zhang, Weimin; Kagermazova, Larisa; Schmauch, Eloi; Goparaju, Chandra; Dieter, Rebecca; Lawson, Nikki; Dandro, Amy; Fazio-Kroll, Ana Laura; Burdorf, Lars; Ayares, David; Lorber, Marc; Segev, Dorry; Ali, Nicole; Goldfarb, David S.; Costa, Victoria; Hilbert, Timothy; Mehta, Sapna A.; Herati, Ramin S.; Pass, Harvey I.; Wu, Ming; Boeke, Jef D.; Keating, Brendan; Mangiola, Massimo; Sommer, Philip M.; Loupy, Alexandre; Griesemer, Adam; Sykes, Megan
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Physiology and immunology of pig-to-human decedent kidney xenotransplant
errNature
IF48.5
err2025-11-13
err0
PREAI
errRobert A. Montgomery; Jeffrey M. Stern; Farshid Fathi; Nathan Suek; Jacqueline I. Kim; Karen Khalil; Benjamin Vermette; Vasishta S. Tatapudi; Aprajita Mattoo; Edward Y. Skolnik; Ian S. Jaffe; Imad Aljabban; Tal Eitan; Shivani Bisen; Elaina P. Weldon; Valentin Goutaudier; Erwan Morgand; Fariza Mezine; Alessia Giarraputo; Idris Boudhabhay; Patrick Bruneval; Aurelie Sannier; Kevin Breen; Yasmeen S. Saad; Constanza Bay Muntnich; Simon H. Williams; Weimin Zhang; Larisa Kagermazova; Eloi Schmauch; Chandra Goparaju; Rebecca Dieter; Nikki Lawson; Amy Dandro; Ana Laura Fazio-Kroll; Lars Burdorf; David Ayares; Marc Lorber; Dorry Segev; Nicole Ali; David S. Goldfarb; Victoria Costa; Timothy Hilbert; Sapna A. Mehta; Ramin S. Herati; Harvey I. Pass; Ming Wu; Jef D. Boeke; Brendan Keating; Massimo Mangiola; Philip M. Sommer; Alexandre Loupy; Adam Griesemer; Megan Sykes
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Multi-omics analysis of a pig-to-human decedent kidney xenotransplant
errNature
IF48.5
err2025-11-13
err0
PREAI
errEloi Schmauch; Brian D. Piening; Alexa K. Dowdell; Maedeh Mohebnasab; Simon H. Williams; Alexey Stukalov; Fred L. Robinson; Robin Bombardi; Ian Jaffe; Karen Khalil; Jacqueline Kim; Imad Aljabban; Tal Eitan; Darragh P. O’Brien; Mercy Rophina; Chan Wang; Alexandra Q. Bartlett; Francesca Zanoni; Jon Albay; David Andrijevic; Berk Maden; Vincent Mauduit; Susanna Vikman; Diana Argibay; Zasha Zayas; Leah Wu; Kiana Moi; Billy Lau; Weimin Zhang; Loren Gragert; Elaina Weldon; Hui Gao; Lauren Hamilton; Larisa Kagermazova; Brendan R. Camellato; Divya Gandla; Riyana Bhatt; Sarah Gao; Rudaynah A. Al-Ali; Alawi H. Habara; Andrew Chang; Shadi Ferdosi; Han M. Chen; Jennifer D. Motter; Fiorella A. Chacon; Scott C. Thomas; Deepak Saxena; Robert L. Fairchild; Alexandre Loupy; Adriana Heguy; Ali Crawford; Serafim Batzoglou; Michael P. Snyder; Asim Siddiqui; Michael V. Holmes; Anita S. Chong; Minna U. Kaikkonen; Suvi Linna-Kuosmanen; David Ayares; Marc Lorber; Anoma Nellore; Edward Y. Skolnik; Aprajita Mattoo; Vasishta S. Tatapudi; Ryan Taft; Massimo Mangiola; Qian Guo; Ramin S. Herati; Jeffrey Stern; Adam Griesemer; Manolis Kellis; Jef D. Boeke; Robert A. Montgomery; Brendan J. Keating
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Enhancer activation from transposable elements in extrachromosomal DNA
err2025-10-21
err0
errOAAI
errKaterina Kraft; Sedona E. Murphy; Matthew G. Jones; Quanming Shi; Aarohi Bhargava-Shah; Christy Luong; King L. Hung; Britney J. He; Rui Li; Seung Kuk Park; Michael T. Montgomery; Natasha E. Weiser; Yanbo Wang; Jens Luebeck; Vineet Bafna; Jef D. Boeke; Paul S. Mischel; Alistair N. Boettiger; Howard Y. Chang
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Engineered transcription-associated Cas9 targeting in eukaryotic cells
err2024-11-27
err0
errOAAI
errGoldberg, Gregory W.; Kogenaru, Manjunatha; Keegan, Sarah; Haase, Max A. B.; Kagermazova, Larisa; Arias, Mauricio A.; Onyebeke, Kenenna; Adams, Samantha; Beyer, Daniel K.; Fenyoe, David; Noyes, Marcus B.; Boeke, Jef D.
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The de novo design and synthesis of yeast chromosome XIII facilitates investigations on aging
err2024-11-22
err0
errOAAI
errZhou, Chun; Wang, Yun; Huang, Yikun; An, Yongpan; Fu, Xian; Yang, Daqian; Wang, Yilin; Zhang, Jintao; Mitchell, Leslie A.; Bader, Joel S.; Cai, Yizhi; Dai, Junbiao; Boeke, Jef D.; Cai, Zhiming; Xie, Zhengwei; Shen, Yue; Huang, Weiren
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Cellular dynamics in pig-to-human kidney xenotransplantation
errMED
IF11.8
err2024-08-01
err4
errOAAI
errPan, Wanqing; Zhang, Weimin; Zheng, Binghan; Camellato, Brendan R.; Stern, Jeffrey; Lin, Ziyan; Khodadadi-Jamayran, Alireza; Kim, Jacqueline; Sommer, Philip; Khalil, Karen; Weldon, Elaina; Bai, Jiangshan; Zhu, Yinan; Meyn, Peter; Heguy, Adriana; Mangiola, Massimo; Griesemer, Adam; Keating, Brendan J.; Montgomery, Robert A.; Xia, Bo; Boeke, Jef D.
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macroH2A1 drives nucleosome dephasing and genome instability in histone humanized yeast
err2024-07-01
err0
errOAAI
errHaase, Max A. B.; Lazar-Stefanita, Luciana; Olafsson, Guojon; Wudzinska, Aleksandra; Shen, Michael J.; Truong, David M.; Boeke, Jef D.
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Integrative multi-omics profiling in human decedents receiving pig heart xenografts
err2024-05-17
err9
PREAI
errSchmauch, Eloi; Piening, Brian; Mohebnasab, Maedeh; Xia, Bo; Zhu, Chenchen; Stern, Jeffrey; Zhang, Weimin; Dowdell, Alexa K.; Kim, Jacqueline I.; Andrijevic, David; Khalil, Karen; Jaffe, Ian S.; Loza, Bao-Li; Gragert, Loren; Camellato, Brendan R.; Oliveira, Michelli F.; O'Brien, Darragh P.; Chen, Han M.; Weldon, Elaina; Gao, Hui; Gandla, Divya; Chang, Andrew; Bhatt, Riyana; Gao, Sarah; Lin, Xiangping; Reddy, Kriyana P.; Kagermazova, Larisa; Habara, Alawi H.; Widawsky, Sophie; Liang, Feng-Xia; Sall, Joseph; Loupy, Alexandre; Heguy, Adriana; Taylor, Sarah E. B.; Zhu, Yinan; Michael, Basil; Jiang, Lihua; Jian, Ruiqi; Chong, Anita S.; Fairchild, Robert L.; Linna-Kuosmanen, Suvi; Kaikkonen, Minna U.; Tatapudi, Vasishta; Lorber, Marc; Ayares, David; Mangiola, Massimo; Narula, Navneet; Moazami, Nader; Pass, Harvey; Herati, Ramin S.; Griesemer, Adam; Kellis, Manolis; Snyder, Michael P.; Montgomery, Robert A.; Boeke, Jef D.; Keating, Brendan J.
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Genomic context sensitizes regulatory elements to genetic disruption
err2024-05-01
err1
errOAAI
errOrdonez, Raquel; Zhang, Weimin; Ellis, Gwen; Zhu, Yinan; Ashe, Hannah J.; Ribeiro-dos-Santos, Andre M.; Brosh, Ran; Huang, Emily; Hogan, Megan S.; Boeke, Jef D.; Maurano, Matthew T.
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Large-scale genomic rearrangements boost SCRaMbLE in Saccharomyces cerevisiae
err2024-01-26
err8
errOAAI
errCheng, Li; Zhao, Shijun; Li, Tianyi; Hou, Sha; Luo, Zhouqing; Xu, Jinsheng; Yu, Wenfei; Jiang, Shuangying; Monti, Marco; Schindler, Daniel; Zhang, Weimin; Hou, Chunhui; Ma, Yingxin; Cai, Yizhi; Boeke, Jef D.; Dai, Junbiao
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Building a eukaryotic chromosome arm by de novo design and synthesis
err2023-11-30
err5
errOAAI
errJiang, Shuangying; Luo, Zhouqing; Wu, Jie; Yu, Kang; Zhao, Shijun; Cai, Zelin; Yu, Wenfei; Wang, Hui; Cheng, Li; Liang, Zhenzhen; Gao, Hui; Monti, Marco; Schindler, Daniel; Huang, Linsen; Zeng, Cheng; Zhang, Weimin; Zhou, Chun; Tang, Yuanwei; Li, Tianyi; Ma, Yingxin; Cai, Yizhi; Boeke, Jef D.; Zhao, Qiao; Dai, Junbiao
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Parallel laboratory evolution and rational debugging reveal genomic plasticity to S. cerevisiae synthetic chromosome XIV defects
err2023-11-01
err11
errOAAI
errWilliams, Thomas C.; Kroukamp, Heinrich; Xu, Xin; Wightman, Elizabeth L. I.; Llorente, Briardo; Borneman, Anthony R.; Carpenter, Alexander C.; Van Wyk, Niel; Meier, Felix; Collier, Thomas R. V.; Espinosa, Monica I.; Daniel, Elizabeth L.; Walker, Roy S. K.; Cai, Yizhi; Nevalainen, Helena K. M.; Curach, Natalie C.; Deveson, Ira W.; Mercer, Timothy R.; Johnson, Daniel L.; Mitchell, Leslie A.; Bader, Joel S.; Stracquadanio, Giovanni; Boeke, Jef D.; Goold, Hugh D.; Pretorius, Isak S.; Paulsen, Ian T.
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Synthetic yeast chromosome XI design provides a testbed for the study of extrachromosomal circular DNA dynamics
err2023-11-01
err14
errOAAI
errBlount, Benjamin A.; Lu, Xinyu; Driessen, Maureen R. M.; Jovicevic, Dejana; Sanchez, Mateo I.; Ciurkot, Klaudia; Zhao, Yu; Lauer, Stephanie; McKiernan, Robert M.; Gowers, Glen-Oliver F.; Sweeney, Fiachra; Fanfani, Viola; Lobzaev, Evgenii; Palacios-Flores, Kim; Walker, Roy S. K.; Hesketh, Andy; Cai, Jitong; Oliver, Stephen G.; Cai, Yizhi; Stracquadanio, Giovanni; Mitchell, Leslie A.; Bader, Joel S.; Boeke, Jef D.; Ellis, Tom
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Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration
err2023-11-01
err12
errOAAI
errFoo, Jee Loon; Kitano, Shohei; Susanto, Adelia Vicanatalita; Jin, Zhu; Lin, Yicong; Luo, Zhouqing; Huang, Linsen; Liang, Zhenzhen; Mitchell, Leslie A.; Yang, Kun; Wong, Adison; Cai, Yizhi; Cai, Jitong; Stracquadanio, Giovanni; Bader, Joel S.; Boeke, Jef D.; Dai, Junbiao; Chang, Matthew Wook
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Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast
err2023-11-01
err16
errOAAI
errShen, Yue; Gao, Feng; Wang, Yun; Wang, Yuerong; Zheng, Ju; Gong, Jianhui; Zhang, Jintao; Luo, Zhouqing; Schindler, Daniel; Deng, Yang; Ding, Weichao; Lin, Tao; Swidah, Reem; Zhao, Hongcui; Jiang, Shuangying; Zeng, Cheng; Chen, Shihong; Chen, Tai; Wang, Yong; Luo, Yisha; Mitchell, Leslie; Bader, Joel S.; Zhang, Guojie; Shen, Xia; Wang, Jian; Fu, Xian; Dai, Junbiao; Boeke, Jef D.; Yang, Huanming; Xu, Xun; Cai, Yizhi
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