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Luke Zappia

northwell health

28H-index
116Paper Count
1.1WCitation Count
Published Papers 25
Publication Date
A Comprehensive Analysis Between Disk Geometry and Posterior Muscle Characteristics Among Degenerative Spine Patients
err2025-12-01
err0
PREAI
errJung, Bongseok; Mathew, Joshua; Sheikh, Alshabab Basel; Elysee, Jonathan; Duvvuri, Priya; Fallon, John; Abbas, Anas; Katz, Austen; Song, Junho; Strigenz, Adam; Zappia, Luke; Lafage, Renaud; Essig, David; Lafage, Virginie; Virk, Sohrab
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Integrating single-cell RNA-seq datasets with substantial batch effects
err2025-10-31
err0
errOAAI
errKarin Hrovatin; Amir Ali Moinfar; Luke Zappia; Shrey Parikh; Alejandro Tejada Lapuerta; Ben Lengerich; Manolis Kellis; Fabian J. Theis
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Deciphering brain organoid heterogeneity by identifying key quality determinants
err2025-10-01
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errOAAI
errTom Boerstler; Daniil Kachkin; Elizaveta Gerasimova; Naime Zagha; Federica Furlanetto; Negar Nayebzade; Luke Zappia; Michelle Boisvert; Michaela Farrell; Sonja Ploetz; Iryna Prots; Martin Regensburger; Claudia Günther; Juergen Winkler; Pooja Gupta; Fabian Theis; Marisa Karow; Sven Falk; Beate Winner; Florian Krach
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Defining and benchmarking open problems in single-cell analysis
err2025-07-01
err0
errOAAI
errMalte D. Luecken; Scott Gigante; Daniel B. Burkhardt; Robrecht Cannoodt; Daniel C. Strobl; Nikolay S. Markov; Luke Zappia; Giovanni Palla; Wesley Lewis; Daniel Dimitrov; Michael E. Vinyard; D. S. Magruder; Michaela F. Mueller; Alma Andersson; Emma Dann; Qian Qin; Dominik J. Otto; Michal Klein; Olga Borisovna Botvinnik; Louise Deconinck; Kai Waldrant; Sai Nirmayi Yasa; Artur Szałata; Andrew Benz; Zhijian Li; Jonathan M. Bloom; Angela Oliveira Pisco; Julio Saez-Rodriguez; Drausin Wulsin; Luca Pinello; Yvan Saeys; Fabian J. Theis; Smita Krishnaswamy
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Feature selection methods affect the performance of scRNA-seq data integration and querying
err2025-03-13
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errOAAI
errLuke Zappia; Sabrina Richter; Ciro Ramírez-Suástegui; Raphael Kfuri-Rubens; Larsen Vornholz; Weixu Wang; Oliver Dietrich; Amit Frishberg; Malte D. Luecken; Fabian J. Theis
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An open-source framework for end-to-end analysis of electronic health record data
err2024-09-12
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errOAAI
errHeumos, Lukas; Ehmele, Philipp; Treis, Tim; zu Belzen, Julius Upmeier; Roellin, Eljas; May, Lilly; Namsaraeva, Altana; Horlava, Nastassya; Shitov, Vladimir A.; Zhang, Xinyue; Zappia, Luke; Knoll, Rainer; Lang, Niklas J.; Hetzel, Leon; Virshup, Isaac; Sikkema, Lisa; Curion, Fabiola; Eils, Roland; Schiller, Herbert B.; Hilgendorff, Anne; Theis, Fabian J.
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Population-level integration of single-cell datasets enables multi-scale analysis across samples
err2023-10-09
err14
errOAAI
errDe Donno, Carlo; Hediyeh-Zadeh, Soroor; Moinfar, Amir Ali; Wagenstetter, Marco; Zappia, Luke; Lotfollahi, Mohammad; Theis, Fabian J.
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An integrated cell atlas of the lung in health and disease
err2023-06-08
err163
errOAAI
errSikkema, Lisa; Ramirez-Suastegui, Ciro; Strobl, Daniel C.; Gillett, Tessa E.; Zappia, Luke; Madissoon, Elo; Markov, Nikolay S.; Zaragosi, Laure-Emmanuelle; Ji, Yuge; Ansari, Meshal; Arguel, Marie-Jeanne; Apperloo, Leonie; Banchero, Martin; Becavin, Christophe; Berg, Marijn; Chichelnitskiy, Evgeny; Chung, Mei-i; Collin, Antoine; Gay, Aurore C. A.; Gote-Schniering, Janine; Kashani, Baharak Hooshiar; Inecik, Kemal; Jain, Manu; Kapellos, Theodore S.; Kole, Tessa M.; Leroy, Sylvie; Mayr, Christoph H.; Oliver, Amanda J.; von Papen, Michael; Peter, Lance; Taylor, Chase J.; Walzthoeni, Thomas; Xu, Chuan; Bui, Linh T.; De Donno, Carlo; Dony, Leander; Faiz, Alen; Guo, Minzhe; Gutierrez, Austin J.; Heumos, Lukas; Huang, Ni; Ibarra, Ignacio L.; Jackson, Nathan D.; Murthy, Preetish Kadur Lakshminarasimha; Lotfollahi, Mohammad; Tabib, Tracy; Talavera-Lopez, Carlos; Travaglini, Kyle J.; Wilbrey-Clark, Anna; Worlock, Kaylee B.; Yoshida, Masahiro; van den Berge, Maarten; Bosse, Yohan; Desai, Tushar J.; Eickelberg, Oliver; Kaminski, Naftali; Krasnow, Mark A.; Lafyatis, Robert; Nikolic, Marko Z.; Powell, Joseph E.; Rajagopal, Jayaraj; Rojas, Mauricio; Rozenblatt-Rosen, Orit; Seibold, Max A.; Sheppard, Dean; Shepherd, Douglas P.; Sin, Don D.; Timens, Wim; Tsankov, Alexander M.; Whitsett, Jeffrey; Xu, Yan; Banovich, Nicholas E.; Barbry, Pascal; Duong, Thu Elizabeth; Falk, Christine S.; Meyer, Kerstin B.; Kropski, Jonathan A.; Pe'er, Dana; Schiller, Herbert B.; Tata, Purushothama Rao; Schultze, Joachim L.; Teichmann, Sara A.; Misharin, Alexander, V; Nawijn, Martijn C.; Luecken, Malte D.; Theis, Fabian J.; Chen, Yuexin; Hagood, James S.; Agami, Ahmed; Horvath, Peter; Lundeberg, Joakim; Marquette, Charles-Hugo; Pryhuber, Gloria; Samakovlis, Chistos; Sun, Xin; Ware, Lorraine B.; Zhang, Kun
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Best practices for single-cell analysis across modalities
err2023-03-31
err234
errOAAI
errHeumos, Lukas; Schaar, Anna C.; Lance, Christopher; Litinetskaya, Anastasia; Drost, Felix; Zappia, Luke; Luecken, Malte; Strobl, Daniel; Henao, Juan; Curion, Fabiola B.; Schiller, Herbert; Theis, Fabian
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Benchmarking atlas-level data integration in single-cell genomics
err2021-12-23
err402
errOAAI
errLuecken, Malte D.; Buettner, M.; Chaichoompu, K.; Danese, A.; Interlandi, M.; Mueller, M. F.; Strobl, D. C.; Zappia, L.; Dugas, M.; Colome-Tatche, M.; Theis, Fabian J.
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splatPop: simulating population scale single-cell RNA sequencing data
err2021-12-15
err6
errOAAI
errAzodi, Christina B.; Zappia, Luke; Oshlack, Alicia; McCarthy, Davis J.
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Sfaira accelerates data and model reuse in single cell genomics
err2021-08-25
err15
errOAAI
errFischer, David S.; Dony, Leander; Konig, Martin; Moeed, Abdul; Zappia, Luke; Heumos, Lukas; Tritschler, Sophie; Holmberg, Olle; Aliee, Hananeh; Theis, Fabian J.
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Developing Bayesian networks in managing the risk of Legionella colonisation of groundwater aeration systems
err2021-04-01
err7
PREAI
errYunana, Danladi; Maclaine, Stuart; Tng, Keng Han; Zappia, Luke; Bradley, Ian; Roser, David; Leslie, Greg; MacIntyre, C. Raina; Le-Clech, Pierre
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Opportunities and challenges in long-read sequencing data analysis
err2020-02-07
err869
errOAAI
errAmarasinghe, Shanika L.; Su, Shian; Dong, Xueyi; Zappia, Luke; Ritchie, Matthew E.; Gouil, Quentin
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Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk (vol 146, dev178673, 2019)
err2019-07-11
err5
errOAAI
errCombes, Alexander N.; Phipson, Belinda; Lawlor, Kynan T.; Dorison, Aude; Patrick, Ralph; Zappia, Luke; Harvey, Richard P.; Oshlack, Alicia; Little, Melissa H.
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Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
err2019-06-12
err114
errOAAI
errCombes, Alexander N.; Phipson, Belinda; Lawlor, Kynan T.; Dorison, Aude; Patrick, Ralph; Zappia, Luke; Harvey, Richard P.; Oshlack, Alicia; Little, Melissa H.
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Unique Transcriptional Architecture in Airway Epithelial Cells and Macrophages Shapes Distinct Responses following Influenza Virus Infection Ex Vivo
err2019-03-15
err20
errOAAI
errMa, Joel Z.; Ng, Wy Ching; Zappia, Luke; Gearing, Linden J.; Olshansky, Moshe; Pham, Kym; Cheong, Karey; Hsu, Arthur; Turner, Stephen J.; Wijburg, Odilia; Londrigan, Sarah L.; Brooks, Andrew G.; Reading, Patrick C.
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Kidney micro-organoids in suspension culture as a scalable source of human pluripotent stem cell-derived kidney cells
err2019-03-07
err113
errOAAI
errKumar, Santhosh, V; Er, Pei X.; Lawlor, Kynan T.; Motazedian, Ali; Scurr, Michelle; Ghobrial, Irene; Combes, Alexander N.; Zappia, Luke; Oshlack, Alicia; Stanley, Edouard G.; Little, Melissa H.
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Nephron progenitor commitment is a stochastic process influenced by cell migration
err2019-01-24
err39
errOAAI
errLawlor, Kynan T.; Zappia, Luke; Lefevre, James; Park, Joo-Seop; Hamilton, Nicholas A.; Oshlack, Alicia; Little, Melissa H.; Combes, Alexander N.
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