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Nils Gehlenborg
Harvard University
97H-index
398Paper Count
10.8WCitation Count
Published Papers 43
Publication Date
- Publication Date
- Impact Factor
- Citations
Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks
Bioinformatics
2026-02-01
0
Kouril, David; Manz, Trevor; Clarence, Tereza; Gehlenborg, Nils
IF5.4
PREAI
scellop: a scalable redesign of cell population plots for single-cell data
2026-01-01
0
Smits, Thomas C.; Akhmetov, Nikolay; Liaw, Tiffany S.; Keller, Mark S.; Morth, Eric; Gehlenborg, Nils
PREAI
An integrated view of the structure and function of the human 4D nucleome
Nature
2025-12-17
0
OAAI
Job Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue
IF48.5
Ten simple rules for making biomedical data resources accessible
2025-11-01
0
Smits, Thomas C.; Weru, Lawrence; Gehlenborg, Nils; L'yi, Sehi
PREAI
The Somatic Mosaicism across Human Tissues Network
Nature
2025-07-02
0
Tim H. H. Coorens; Ji Won Oh; Yujin Angelina Choi; Nam Seop Lim; Boxun Zhao; Adam Voshall; Alexej Abyzov; Lucinda Antonacci-Fulton; Samuel Aparicio; Kristin G. Ardlie; Thomas J. Bell; James T. Bennett; Bradley E. Bernstein; Thomas G. Blanchard; Alan P. Boyle; Jason D. Buenrostro; Kathleen H. Burns; Fei Chen; Rui Chen; Sangita Choudhury; Harsha V. Doddapaneni; Evan E. Eichler; Gilad D. Evrony; Melissa A. Faith; Thomas G. Fazzio; Robert S. Fulton; Manuel Garber; Nils Gehlenborg; Soren Germer; Gad Getz; Richard A. Gibbs; Raquel G. Hernandez; Fulai Jin; Jan O. Korbel; Dan A. Landau; Heather A. Lawson; Niall J. Lennon; Heng Li; Yan Li; Po-Ru Loh; Gabor Marth; Michael J. McConnell; Ryan E. Mills; Stephen B. Montgomery; Pradeep Natarajan; Peter J. Park; Rahul Satija; Fritz J. Sedlazeck; Diane D. Shao; Hui Shen; Andrew B. Stergachis; Hunter R. Underhill; Alexander E. Urban; Melissa W. VonDran; Christopher A. Walsh; Ting Wang; Tao P. Wu; Chenghang Zong; Eunjung Alice Lee; Flora M. Vaccarino
IF48.5
PREAI
Vitessce: integrative visualization of multimodal and spatially resolved single-cell data
NATURE METHODS
2024-09-27
1
OAAI
Keller, Mark S.; Gold, Ilan; McCallum, Chuck; Manz, Trevor; Kharchenko, Peter V.; Gehlenborg, Nils
IF32.1
A foundation model for clinician-centered drug repurposing
NATURE MEDICINE
2024-09-25
3
OAAI
Huang, Kexin; Chandak, Payal; Wang, Qianwen; Havaldar, Shreyas; Vaid, Akhil; Leskovec, Jure; Nadkarni, Girish N.; Glicksberg, Benjamin S.; Gehlenborg, Nils; Zitnik, Marinka
IF50
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data
GENOME BIOLOGY
2024-08-01
1
OAAI
Sarfraz, Irzam; Wang, Yichen; Shastry, Amulya; Teh, Wei Kheng; Sokolov, Artem; Herb, Brian R.; Creasy, Heather H.; Virshup, Isaac; Dries, Ruben; Degatano, Kylee; Mahurkar, Anup; Schnell, Daniel J.; Madrigal, Pedro; Hilton, Jason; Gehlenborg, Nils; Tickle, Timothy; Campbell, Joshua D.
IF9.4
The chromatin landscape of healthy and injured cell types in the human kidney
NATURE COMMUNICATIONS
2024-01-10
8
OAAI
Gisch, Debora L.; Brennan, Michelle; Lake, Blue B.; Basta, Jeannine; Keller, Mark S.; Melo Ferreira, Ricardo; Akilesh, Shreeram; Ghag, Reetika; Lu, Charles; Cheng, Ying-Hua; Collins, Kimberly S.; Parikh, Samir V.; Rovin, Brad H.; Robbins, Lynn; Stout, Lisa; Conklin, Kimberly Y.; Diep, Dinh; Zhang, Bo; Knoten, Amanda; Barwinska, Daria; Asghari, Mahla; Sabo, Angela R.; Ferkowicz, Michael J.; Sutton, Timothy A.; Kelly, Katherine J.; De Boer, Ian H.; Rosas, Sylvia E.; Kiryluk, Krzysztof; Hodgin, Jeffrey B.; Alakwaa, Fadhl; Winfree, Seth; Jefferson, Nichole; Turkmen, Aydin; Gaut, Joseph P.; Gehlenborg, Nils; Phillips, Carrie L.; El-Achkar, Tarek M.; Dagher, Pierre C.; Hato, Takashi; Zhang, Kun; Himmelfarb, Jonathan; Kretzler, Matthias; Mollah, Shamim; Lake, Blue; Morales, Alexander; Stillman, Isaac; Lecker, Stewart; Bogen, Steve; Verma, Ashish; Yu, Guanghao; Schmidt, Insa; Henderson, Joel; Beck, Laurence; Yadati, Pranav; Waikar, Sushrut; Amodu, Afolarin A.; Maikhor, Shana; Ilori, Titlayo; Colona, Mia R.; Weins, Astrid; Mcmahon, Gearoid; Hacohen, Nir; Greka, Anna; Marshall, Jamie L.; Hoover, Paul J.; Viswanathan, Vidya S.; Crawford, Dana; Aulisio, Mark; Bush, William; Chen, Yijiang; Madabhushi, Anant; O'Malley, Charles; Gadegbeku, Crystal; Sendrey, Dianna; Poggio, Emilio; O'Toole, John; Sedor, John; Taliercio, Jonathan; Bush, Lakeshia; Herlitz, Leal; Palmer, Ellen; Nguyen, Jane; Spates-Harden, Kassandra; Cooperman, Leslie; Jolly, Stacey; Vinovskis, Carissa; Bomback, Andrew; Barasch, Jonathan; Kiryluk, Krzysztof; Appelbaum, Paul; D'Agati, Vivette; Berrouet, Cecilia; Mehl, Karla; Sabatello, Maya; Shang, Ning; Balderes, Olivia; Canetta, Pietro A.; Kudose, Satoru; de Pinho Goncalves, Joana; Migas, Lukasz; van de Plas, Raf; Lardenoije, Roy; Barisoni, Laura; Rennke, Helmut; Verdoes, Abraham; Sabo, Angela; Gisch, Debora Lidia; Williams, James; Kelly, Katherine; Dunn, Kenneth; Eadon, Michael; Ferkowicz, Michael; Dagher, Pierre; Winfree, Seth; Bledsoe, Sharon; Wofford, Stephanie; (El-Achkar), Tarek Ashkar; Sutton, Timothy; Bowen, William; Slade, Austen; Record, Elizabeth; Cheng, Yinghua; Jain, Yashvardhan; Herr, Bruce; Quardokus, Ellen; Wang, Ashley; Villalobos, Celia Pamela Corona; Parikh, Chirag; Atta, Mohamed; Menez, Steven; Wen, Yumeng; Xu, Alan; Bernard, Lauren; Johansen, Camille; Chen, Sarah; Rosas, Sylvia; Donohoe, Isabel; Sun, Jennifer; Knight, Richard; Shpigel, Anna; Bebiak, Jack; Saul, John; Ardayfio, Joseph; Koewler, Robert; Pinkeney, Roy; Campbell, Taneisha; Azeloglu, Evren; Nadkarni, Girish; He, John; Tokita, Joji; Campbell, Kirk; Patel, Marissa; Lefferts, Sean; Iyengar, Srinivas Ravi; Ward, Stephen; Coca, Steven; He, Cijang; Xiong, Yuguang; Prasad, Pottumarthi; Rovin, Brad; Shapiro, John P.; Parikh, Samir; Madhavan, Sethu M.; Lukowski, Jessica; Velickovic, Dusan; Pasa-Tolic, Ljiljana; Oliver, George (Holt); Troyanskaya, Olga; Sealfon, Rachel; Mao, Weiguang; Wong, Aaron; Pollack, Ari; Goltsev, Yury; Ginley, Brandon; Lutnick, Brendon; Nolan, Garry; Anjani, Kavya; Mukatash, Tariq; Laszik, Zoltan G.; Campos, Baltazar; Thajudeen, Bijin; Beyda, David; Bracamonte, Erika; Brosius, Frank; Woodhead, Gregory; Mendoza, Katherine; Marquez, Nicole; Scott, Raymond; Tsosie, Rebecca; Saunders, Milda; Rike, Adele; Woodle, E. Steve; Lee, Paul J.; Alloway, Rita R.; Shi, Tiffany; Hsieh, Elena; Kendrick, Jessica; Thurman, Joshua; Wrobel, Julia; Pyle, Laura; Bjornstad, Petter; Lucarelli, Nicholas; Sarder, Pinaki; Renteria, Amada; Ricardo, Ana; Srivastava, Anand; Redmond, Devona; Carmona-Powell, Eunice; Bui, James; Lash, James; Fox, Monica; Meza, Natalie; Gaba, Ron; Setty, Suman; Kelly, Tanika; Lienczewski, Chrysta; Demeke, Dawit; Otto, Edgar; Ascani, Heather; Hodgin, Jeff; Schaub, Jennifer; Hartman, John; Mariani, Laura; Bitzer, Markus; Rose, Michael; Bonevich, Nikki; Conser, Ninive; Mccown, Phillip; Dull, Rachel; Menon, Rajasree; Reamy, Rebecca; Eddy, Sean; Balis, Ul; Blanc, Victoria; Nair, Viji; He, Yongqun Oliver; Wright, Zachary; Steck, Becky; Luo, Jinghui; Frey, Renee; Coleman, Alyson; Henderson-Brown, Dorisann; Berge, Jerica; Caramori, Maria Luiza; Adeyi, Oyedele; Nachman, Patrick; Safadi, Sami; Flanagan, Siobhan; Ma, Sisi; Klett, Susan; Wolf, Susan; Harindhanavudhi, Tasma; Rao, Via; Mottl, Amy; Froment, Anne; Zeitler, Evan; Bream, Peter; Kelley, Sara; Rosengart, Matthew; Elder, Michele; Palevsky, Paul; Murugan, Raghavan; Hall, Daniel E.; Bender, Filitsa; Winters, James; Kellum, John A.; Gilliam, Matthew; Tublin, Mitchell; Tan, Roderick; Zhang, Guanshi; Sharma, Kumar; Venkatachalam, Manjeri; Hendricks, Allen; Kermani, Asra; Torrealba, Jose; Vazquez, Miguel; Wang, Nancy; Cai, Qi; Miller, Richard Tyler; Ma, Shihong; Hedayati, Susan; Hoofnagle, Andrew; Wangperawong, Artit; Berglund, Ashley; Dighe, Ashveena L.; Young, Bessie; Larson, Brandon; Berry, Brooke; Alpers, Charles; Limonte, Christine; Stutzke, Christy; Roberts, Glenda; de Boer, Ian; Snyder, Jaime; Phuong, Jimmy; Carson, Jonas; Rezaei, Kasra; Tuttle, Katherine; Brown, Keith; Blank, Kristina; Sarkisova, Natalya; Jefferson, Nichole; Mcclelland, Robyn; Mooney, Sean; Nam, Yunbi; Wilcox, Adam; Park, Christopher; Dowd, Frederick; Williams, Kayleen; Grewenow, Stephanie M.; Daniel, Stephen; Shankland, Stuart; Pamreddy, Annapurna; Ye, Hongping; Montellano, Richard; Bansal, Shweta; Pillai, Anil; Zhang, Dianbo; Park, Harold; Patel, Jiten; Sambandam, Kamalanathan; Basit, Mujeeb; Wen, Natasha; Moe, Orson W.; Toto, Robert D.; Lee, Simon C.; Sharman, Kavya; Caprioli, Richard M.; Fogo, Agnes; Allen, Jamie; Spraggins, Jeffrey; Djambazova, Katerina; de Caestecker, Mark; Dufresne, Martin; Farrow, Melissa; Vijayan, Anitha; Minor, Brittany; Nwanne, Gerald; Gaut, Joseph; Conlon, Kristine; Kaushal, Madhurima; Diettman, Sabine M.; Victoria Castro, Angela M.; Moledina, Dennis; Wilson, Francis P.; Moeckel, Gilbert; Cantley, Lloyd; Shaw, Melissa; Kakade, Vijayakumar; Arora, Tanima; Jain, Sanjay; Rauchman, Michael; Eadon, Michael T.
IF15.7
Cistrome Data Browser: integrated search, analysis and visualization of chromatin data
NUCLEIC ACIDS RESEARCH
2023-11-16
7
OAAI
Taing, Len; Dandawate, Ariaki; LYi, Sehi; Gehlenborg, Nils; Brown, Myles; Meyer, Clifford A.
IF13.1
Chromoscope: interactive multiscale visualization for structural variation in human genomes
NATURE METHODS
2023-11-01
1
L'Yi, Sehi; Maziec, Dominika; Stevens, Victoria; Manz, Trevor; Veit, Alexander; Berselli, Michele; Park, Peter J.; Glodzik, Dominik; Gehlenborg, Nils
IF32.1
PREAI
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
NATURE CELL BIOLOGY
2023-07-19
36
OAAI
Jain, Sanjay; Pei, Liming; Spraggins, Jeffrey M.; Angelo, Michael; Carson, James P.; Gehlenborg, Nils; Ginty, Fiona; Goncalves, Joana P.; Hagood, James S.; Hickey, John W.; Kelleher, Neil L.; Laurent, Louise C.; Lin, Shin; Lin, Yiing; Liu, Huiping; Naba, Alexandra; Nakayasu, Ernesto S.; Qian, Wei-Jun; Radtke, Andrea; Robson, Paul; Stockwell, Brent R.; Van de Plas, Raf; Vlachos, Ioannis S.; Zhou, Mowei; Boerner, Katy; Snyder, Michael P.; Ahn, Kyung Jin; Allen, Jamie; Anderson, David M.; Anderton, Christopher R.; Curcio, Christine; Angelin, Alessia; Arvanitis, Constadina; Atta, Lyla; Awosika-Olumo, Demi; Bahmani, Amir; Bai, Huajun; Balderrama, Karol; Balzano, Leandro; Bandyopadhyay, Gautam; Bandyopadhyay, Shovik; Bar-Joseph, Ziv; Barnhart, Kurt; Barwinska, Daria; Becich, Michael; Becker, Laren; Becker, Winston; Bedi, Kenneth; Bendall, Sean; Benninger, Kathy; Betancur, David; Bettinger, Keith; Billings, Sunteasja; Blood, Philip; Bolin, Daniel; Border, Samuel; Bosse, Marc; Bramer, Lisa; Brewer, Maya; Brusko, Maigan; Bueckle, Andreas; Burke, Karl; Burnum-Johnson, Kristin; Butcher, Eugene; Butterworth, Elizabeth; Cai, Long; Calandrelli, Riccardo; Caldwell, Michael; Campbell-Thompson, Martha; Cao, Dongfeng; Cao-Berg, Ivan; Caprioli, Richard; Caraccio, Chiara; Caron, Anita; Carroll, Megan; Chadwick, Chrystal; Chen, Angela; Chen, Derek; Chen, Fei; Chen, Haoran; Chen, Jing; Chen, Li; Chen, Lu; Chiacchia, Kenneth; Cho, Sanghee; Chou, Peter; Choy, Lisa; Cisar, Cecilia; Clair, Geremy; Clarke, Laura; Clouthier, Kelly A.; Colley, Madeline E.; Conlon, Kristin; Conroy, John; Contrepois, Kevin; Corbett, Anthony; Corwin, Alex; Cotter, Daniel; Courtois, Elise; Cruz, Aaron; Csonka, Christopher; Czupil, Kimberley; Daiya, Vicky; Dale, Kali; Davanagere, Shakeel Ahamed; Dayao, Monica; de Caestecker, Mark P.; Decker, Aubrianna; Deems, Stephen; Degnan, David; Desai, Tushar; Deshpande, Vikrant; Deutsch, Gail; Devlin, Michelle; Diep, Dinh; Dodd, Carla; Donahue, Sean; Dong, Weixiu; Peixoto, Rafael dos Santos; Duffy, Michael; Dufresne, Martin; Duong, Thu Elizabeth; Dutra, Jennifer; Eadon, Michael T.; El-Achkar, Tarek M.; Enninful, Archibald; Eraslan, Gokcen; Eshelman, Diane; Espin-Perez, Almudena; Esplin, Edward D.; Esselman, Allison; Falo, Louis D.; Falo, Louis; Fan, Jean; Fan, Rong; Farrow, Melissa A.; Farzad, Negin; Favaro, Patricia; Fermin, Jamie; Filiz, Ferda; Filus, Shane; Fisch, Kathleen; Fisher, Eyal; Fisher, Stephen; Flowers, Katelyn; Flynn, William F.; Fogo, Agnes B.; Fu, Dongtao (Ann); Fulcher, James; Fung, Anthony; Furst, Derek; Gallant, Michael; Gao, Fu; Gao, Yu; Gaulton, Kyle; Gaut, Joseph P.; Gee, James; Ghag, Reetika R.; Ghazanfar, Shila; Ghose, Soumya; Gisch, Debora; Gold, Ilan; Gondalia, Aashay; Gorman, Brittney; Greenleaf, William; Greenwald, Noah; Gregory, Brian; Guo, Rong; Gupta, Rajat; Hakimian, Hunter; Haltom, Jeff; Halushka, Marc; Han, Kyu Sang; Hanson, Casey; Harbury, Pehr; Hardi, Josef; Harlan, Linda; Harris, Raymond C.; Hartman, Austin; Heidari, Elyas; Helfer, Jesse; Helminiak, David; Hemberg, Martin; Henning, Nathaniel; Herr, Bruce W., II; Ho, Jonhan; Holden-Wiltse, Jeanne; Hong, Seung-Hyun; Hong, Young-Kwon; Honick, Brendan; Hood, Greg; Hu, Po; Hu, Qiwen; Huang, Molly; Huyck, Heidie; Imtiaz, Tamjid; Isberg, Olof Gerdur; Itkin, Maxim; Jackson, Dana; Jacobs, Marni; Jain, Yashvardhan; Jewell, David; Jiang, Lihua; Jiang, Zhenghui G.; Johnston, Sarah; Joshi, Pujan; Ju, Yingnan; Judd, Audra; Kagel, Adam; Kahn, Ari; Kalavros, Nikolaos; Kalhor, Kian; Karagkouni, Dimitra; Karathanos, Thomas; Karunamurthy, Arivarasan; Katari, Suhas; Kates, Heather; Kaushal, Madhurima; Keener, Nicholas; Keller, Mark; Kenney, Mariah; Kern, Colin; Kharchenko, Peter; Kim, Junhyong; Kingsford, Carl; Kirwan, Jessica; Kiselev, Vladimir; Kishi, Jocelyn; Kitata, Reta Birhanu; Knoten, Amanda; Kollar, Charles; Krishnamoorthy, Praveen; Kruse, Angela R. S.; Da, Kuang; Kundaje, Anshul; Kutschera, Eric; Kwon, Yumi; Lake, Blue B.; Lancaster, Samuel; Langlieb, Jonah; Lardenoije, Roy; Laronda, Monica; Laskin, Julia; Lau, Ken; Lee, Hayan; Lee, Maria; Lee, Mejeong; Strekalova, Yulia Levites; Li, Dongshunyi; Li, Jennifer; Li, Jilong; Li, Xiangtang; Li, Zhi; Liao, Yen-Chen; Liaw, Tiffany; Lin, Pei; Lin, Yulieh; Lindsay, Scott; Liu, Chunjie; Liu, Yang; Liu, Yuan; Lott, Marie; Lotz, Martin; Lowery, Lisa; Lu, Peiran; Lu, Xinyue; Lucarelli, Nicholas; Lun, Xiaokang; Luo, Zhifei; Ma, Jian; Macosko, Evan; Mahajan, Mayank; Maier, Libby; Makowski, Danika; Malek, Morad; Manthey, David; Manz, Trevor; Margulies, Kenneth; Marioni, John; Martindale, Matthew; Mason, Cayla; Mathews, Clayton; Maye, Peter; McCallum, Chuck; McDonough, Elizabeth; McDonough, Liz; Mcdowell, Hannah; Meads, Morgan; Medina-Serpas, Miguel; Ferreira, Ricardo Melo; Messinger, Jeffrey; Metis, Kay; Migas, Lukasz G.; Miller, Brendan; Mimar, Sayat; Minor, Brittany; Misra, Ravi; Missarova, Alsu; Mistretta, Christopher; Moens, Roger; Moerth, Eric; Moffitt, Jeffrey; Molla, Gesmira; Monroe, Matthew; Monte, Emma; Morgan, Mike; Muraro, Daniele; Murphy, Bob (Robert); Murray, Evan; Musen, Mark A.; Naglah, Ahmed; Nasamran, Chanond; Neelakantan, Taruna; Nevins, Stephanie; Hieu Nguyen; Nam Nguyen; Tram Nguyen; Tri Nguyen; Nigra, Deb; Nofal, Michel; Nolan, Garry; Nwanne, Gerald; O'Connor, Martin; Okuda, Kenichi; Olmer, Merissa; O'Neill, Kathleen; Otaluka, Nancy; Pang, Minxing; Parast, Mana; Pasa-Tolic, Ljiljana; Paten, Benedict; Patterson, Nathan Heath; Peng, Ting; Phillips, Gesina; Pichavant, Mina; Piehowski, Paul; Pilner, Hannah; Pingry, Ellie; Pita-Juarez, Yered; Plevritis, Sylvia; Ploumakis, Athanasios; Pouch, Alison; Pryhuber, Gloria; Puerto, Juan; Qaurooni, Danial; Qin, Ling; Quardokus, Ellen M.; Rajbhandari, Presha; Rakow-Penner, Rebecca; Ramasamy, Ramalakshmi; Read, David; Record, Elizabeth G.; Reeves, David; Ricarte, Allyson; Rodriguez-Soto, Ana; Ropelewski, Alexander; Rosario, Jean; Roselkis, Morla-Adames; Rowe, David; Roy, Tarun Kanti; Ruffalo, Matt; Ruschman, Nancy; Sabo, Angela; Sachdev, Nina; Saka, Sinem; Salamon, Diane; Sarder, Pinaki; Sasaki, Hiroshi; Satija, Rahul; Saunders, Diane; Sawka, Riley; Schey, Kevin; Schlehlein, Heidi; Scholten, David; Schultz, Sarah; Schwartz, Lauren; Schwenk, Melissa; Scibek, Robin; Segre, Ayellet; Serrata, Matthew; Shands, Walter; Shen, Xiaotao; Shendure, Jay; Shephard, Holly; Shi, Lingyan; Shi, Tujin; Shin, Dong-Guk; Shirey, Bill; Sibilla, Max; Silber, Michal; Silverstein, Jonathan; Simmel, Derek; Simmons, Alan; Singhal, Dhruv; Sivajothi, Santhosh; Smits, Thomas; Soncin, Francesca; Song, Qi; Stanley, Valentina; Stuart, Tim; Su, Hanquan; Su, Pei; Sun, Xin; Surrette, Christine; Swahn, Hannah; Tan, Kai; Teichmann, Sarah; Tejomay, Abhiroop; Tellides, George; Thomas, Kathleen; Thomas, Tracey; Thompson, Marissa; Tian, Hua; Tideman, Leonoor; Trapnell, Cole; Tsai, Albert G.; Tsai, Chia-Feng; Tsai, Leo; Tsui, Elizabeth; Tsui, Tina; Tung, Jason; Turner, Morgan; Uranic, Jackie; Vaishnav, Eeshit Dhaval; Varra, Sricharan Reddy; Vaskivskyi, Vasyl; Velickovic, Dusan; Velickovic, Marija; Verheyden, Jamie; Waldrip, Jessica; Wallace, Douglas; Wan, Xueyi; Wang, Allen; Wang, Fusheng; Wang, Meng; Wang, Shuoshuo; Wang, Xuefei; Wasserfall, Clive; Wayne, Leonard; Webber, James; Weber, Griffin M.; Wei, Bei; Wei, Jian-Jun; Weimer, Annika; Welling, Joel; Wen, Xingzhao; Wen, Zishen; Williams, MacKenzie; Winfree, Seth; Winograd, Nicholas; Woodard, Abashai; Wright, Devin; Wu, Fan; Wu, Pei-Hsun; Wu, Qiuyang; Wu, Xiaodong; Xing, Yi; Xu, Tiangyang; Yang, Manxi; Yang, Mingyu; Yap, Joseph; Ye, Dong Hye; Yin, Peng; Yuan, Zhou; Yun, Chi (Jina); Zahraei, Ali; Zemaitis, Kevin; Zhang, Bo; Zhang, Caibin; Zhang, Chenyu; Zhang, Chi; Zhang, Kun; Zhang, Shiping; Zhang, Ted; Zhang, Yida; Zhao, Bingqing; Zhao, Wenxin; Zheng, Jia Wen; Zhong, Sheng; Zhu, Bokai; Zhu, Chenchen; Zhu, Diming; Zhu, Quan; Zhu, Ying
IF19.1
Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging
NATURE METHODS
2023-07-19
11
OAAI
Quardokus, Ellen M.; Saunders, Diane C.; McDonough, Elizabeth; Hickey, John W.; Werlein, Christopher; Surrette, Christine; Rajbhandari, Presha; Casals, Anna Martinez; Tian, Hua; Lowery, Lisa; Neumann, Elizabeth K.; Bjoerklund, Frida; Neelakantan, Taruna V.; Croteau, Josh; Wiblin, Anne E.; Fisher, Jeremy; Livengood, April J.; Dowell, Karen G.; Silverstein, Jonathan C.; Spraggins, Jeffrey M.; Pryhuber, Gloria S.; Deutsch, Gail; Ginty, Fiona; Nolan, Garry P.; Melov, Simon; Jonigk, Danny; Caldwell, Michael A.; Vlachos, Ioannis S.; Muller, Werner; Gehlenborg, Nils; Stockwell, Brent R.; Lundberg, Emma; Snyder, Michael P.; Germain, Ronald N.; Camarillo, Jeannie M.; Kelleher, Neil L.; Boerner, Katy; Radtke, Andrea J.
IF32.1
Potential pitfalls in the use of real-world data for studying long COVID
NATURE MEDICINE
2023-04-13
10
OAAI
Zhang, Harrison G.; Honerlaw, Jacqueline P.; Maripuri, Monika; Samayamuthu, Malarkodi Jebathilagam; Beaulieu-Jones, Brendin R.; Baig, Huma S.; L'Yi, Sehi; Ho, Yuk-Lam; Morris, Michele; Panickan, Vidul Ayakulangara; Wang, Xuan; Weber, Griffin M.; Liao, Katherine P.; Visweswaran, Shyam; Tan, Bryce W. Q.; Yuan, William; Gehlenborg, Nils; Muralidhar, Sumitra; Ramoni, Rachel B.; Kohane, Isaac S.; Xia, Zongqi; Cho, Kelly; Cai, Tianxi; Brat, Gabriel A.; Aaron, James R.; Agapito, Giuseppe; Albayrak, Adem; Albi, Giuseppe; Alessiani, Mario; Alloni, Anna; Amendola, Danilo F.; Angoulvant, Francois; Anthony, Li L. L. J.; Aronow, Bruce J.; Ashraf, Fatima; Atz, Andrew; Avillach, Paul; Azevedo, Paula S.; Balshi, James; Beaulieu-Jones, Brett K.; Bell, Douglas S.; Bellasi, Antonio; Bellazzi, Riccardo; Benoit, Vincent; Beraghi, Michele; Bernal-Sobrino, Jose Luis; Bernaux, Melodie; Bey, Romain; Bhatnagar, Surbhi; Blanco-Martinez, Alvar; Bonzel, Clara-Lea; Booth, John; Bosari, Silvano; Bourgeois, Florence T.; Bradford, Robert L.; Brat, Gabriel A.; Breant, Stephane; Brown, Nicholas W.; Bruno, Raffaele; Bryant, William A.; Bucalo, Mauro; Bucholz, Emily; Burgun, Anita; Cai, Tianxi; Cannataro, Mario; Carmona, Aldo; Caucheteux, Charlotte; Champ, Julien; Chen, Jin; Chen, Krista Y.; Chiovato, Luca; Chiudinelli, Lorenzo; Cho, Kelly; Cimino, James J.; Colicchio, Tiago K.; Cormont, Sylvie; Cossin, Sebastien; Craig, Jean B.; Luis Cruz-Bermudez, Juan; Cruz-Rojo, Jaime; Dagliati, Arianna; Daniar, Mohamad; Daniel, Christel; Das, Priyam; Devkota, Batsal; Dionne, Audrey; Duan, Rui; Dubiel, Julien; DuVall, Scott L.; Esteve, Loic; Estiri, Hossein; Fan, Shirley; Follett, Robert W.; Ganslandt, Thomas; Garcia-Barrio, Noelia; Garmire, Lana X.; Gehlenborg, Nils; Getzen, Emily J.; Geva, Alon; Gradinger, Tobias; Gramfort, Alexandre; Griffier, Romain; Griffon, Nicolas; Grisel, Olivier; Gutierrez-Sacristan, Alba; Han, Larry; Hanauer, David A.; Haverkamp, Christian; Hazard, Derek Y.; He, Bing; Henderson, Darren W.; Hilka, Martin; Ho, Yuk-Lam; Holmes, John H.; Hong, Chuan; Huling, Kenneth M.; Hutch, Meghan R.; Issitt, Richard W.; Jannot, Anne Sophie; Jouhet, Vianney; Kavuluru, Ramakanth; Keller, Mark S.; Kennedy, Chris J.; Key, Daniel A.; Kirchoff, Katie; Klann, Jeffrey G.; Kohane, Isaac S.; Krantz, Ian D.; Kraska, Detlef; Krishnamurthy, Ashok K.; L'Yi, Sehi; Le, Trang T.; Leblanc, Judith; Lemaitre, Guillaume; Lenert, Leslie; Leprovost, Damien; Liu, Molei; Loh, Ne Hooi Will; Long, Qi; Lozano-Zahonero, Sara; Luo, Yuan; Lynch, Kristine E.; Mahmood, Sadiqa; Maidlow, Sarah E.; Makoudjou, Adeline; Malovini, Alberto; Mandl, Kenneth D.; Mao, Chengsheng; Maram, Anupama; Martel, Patricia; Martins, Marcelo R.; Marwaha, Jayson S.; Masino, Aaron J.; Mazzitelli, Maria; Mensch, Arthur; Milano, Marianna; Minicucci, Marcos F.; Moal, Bertrand; Ahooyi, Taha Mohseni; Moore, Jason H.; Moraleda, Cinta; Morris, Jeffrey S.; Morris, Michele; Moshal, Karyn L.; Mousavi, Sajad; Mowery, Danielle L.; Murad, Douglas A.; Murphy, Shawn N.; Naughton, Thomas P.; Breda Neto, Carlos Tadeu; Neuraz, Antoine; Newburger, Jane; Ngiam, Kee Yuan; Njoroge, Wanjiku F. M.; Norman, James B.; Obeid, Jihad; Okoshi, Marina P.; Olson, Karen L.; Omenn, Gilbert S.; Orlova, Nina; Ostasiewski, Brian D.; Palmer, Nathan P.; Paris, Nicolas; Patel, Lav P.; Pedrera-Jimenez, Miguel; Pfaff, Emily R.; Pfaff, Ashley C.; Pillion, Danielle; Pizzimenti, Sara; Prokosch, Hans U.; Prudente, Robson A.; Prunotto, Andrea; Quiros-Gonzalez, Victor; Ramoni, Rachel B.; Raskin, Maryna; Rieg, Siegbert; Roig-Dominguez, Gustavo; Rojo, Pablo; Rubio-Mayo, Paula; Sacchi, Paolo; Saez, Carlos; Salamanca, Elisa; Samayamuthu, Malarkodi Jebathilagam; Sanchez-Pinto, L. Nelson; Sandrin, Arnaud; Santhanam, Nandhini; Santos, Janaina C. C.; Vidorreta, Fernando J. Sanz; Savino, Maria; Schriver, Emily R.; Schubert, Petra; Schuettler, Juergen; Scudeller, Luigia; Sebire, Neil J.; Serrano-Balazote, Pablo; Serre, Patricia; Serret-Larmande, Arnaud; Shah, Mohsin; Abad, Zahra Shakeri Hossein; Silvio, Domenick; Sliz, Piotr; Son, Jiyeon; Sonday, Charles; South, Andrew M.; Spiridou, Anastasia; Strasser, Zachary H.; Tan, Amelia L. M.; Tan, Bryce W. Q.; Tan, Byorn W. L.; Tanni, Suzana E.; Taylor, Deanne M.; Terriza-Torres, Ana I.; Tibollo, Valentina; Tippmann, Patric; Toh, Emma M. S.; Torti, Carlo; Trecarichi, Enrico M.; Tseng, Yi-Ju; Vallejos, Andrew K.; Varoquaux, Gael; Vella, Margaret E.; Verdy, Guillaume; Vie, Jill-Jenn; Visweswaran, Shyam; Vitacca, Michele; Wagholikar, Kavishwar B.; Waitman, Lemuel R.; Wang, Xuan; Wassermann, Demian; Weber, Griffin M.; Wolkewitz, Martin; Wong, Scott; Xia, Zongqi; Xiong, Xin; Ye, Ye; Yehya, Nadir; Yuan, William; Zambelli, Alberto; Zhang, Harrison G.; Zoller, Daniela; Zuccaro, Valentina; Zucco, Chiara
IF50
NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health
NATURE AGING
2022-12-20
49
OAAI
Lee, Patty J.; Benz, Christopher C.; Blood, Philip; Boerner, Katy; Campisi, Judith; Chen, Feng; Daldrup-Link, Heike; De Jager, Phil; Ding, Li; Duncan, Francesca E.; Eickelberg, Oliver; Fan, Rong; Finkel, Toren; Furman, David; Garovic, Vesna; Gehlenborg, Nils; Glass, Carolyn; Heckenbach, Indra; Joseph, Ziv-Bar; Katiyar, Pragati; Kim, So-Jin; Koenigshoff, Melanie; Kuchel, George A.; Lee, Haesung; Lee, Jun Hee; Ma, Jian; Ma, Qin; Melov, Simon; Metis, Kay; Mora, Ana L.; Musi, Nicolas; Neretti, Nicola; Passos, Joao F.; Rahman, Irfan; Rivera-Mulia, Juan Carlos; Robson, Paul; Rojas, Mauricio; Roy, Ananda L.; Scheibye-Knudsen, Morten; Schilling, Birgit; Shi, Pixu; Silverstein, Jonathan C.; Suryadevara, Vidyani; Xie, Jichun; Wang, Jinhua; Wong, A. Ian; Niedernhofer, Laura J.; Wang, Siyuan (Steven); Anvari, Hannah; Balough, Julia; Benz, Christopher; Bons, Joanna; Brenerman, Boris; Evans, William; Gerencser, Akos; Gregory, Heather; Hansen, Malene; Justice, Jamie; Kapahi, Pankaj; Murad, Natalia; O'Broin, Amy; Pavone, Mary Ellen; Powell, Mark; Scott, Gary; Shanes, Elisheva; Shankaran, Mahalakshmi; Verdin, Eric; Winer, Daniel; Wu, Fei; Adams, Andrew; Blood, Philip D.; Bueckle, Andreas; Cao-Berg, Ivan; Chen, Hao; Davis, Michael; Filus, Shane; Hao, Yuhan; Hartman, Austin; Hasanaj, Euxhen; Helfer, Jesse; Herr, Bruce, II; Bar Joseph, Ziv; Molla, Gesmira; Mou, Gloria; Puerto, Juan; Quardokus, Ellen M.; Ropelewski, Alexander J.; Ruffalo, Matt; Satija, Rahul; Schwenk, Melissa; Scibek, Robin; Shirey, William; Sibilla, Max; Welling, Joel; Yuan, Zhou; Bonneau, Richard; Christiano, Angela; Izar, Benjamin; Menon, Vilas; Owens, David M.; Phatnani, Hemali; Smith, Colin; Suh, Yousin; Teich, Andrew F.; Bekker, Valerie; Chan, Cliburn; Coutavas, Elias; Hartwig, Matthew G.; Ji, Zhicheng; Nixon, Andrew B.; Dou, Zhixun; Rajagopal, Jayaraj; Slavov, Nikolai; Holmes, David, III; Jurk, Diana; Kirkland, James L.; Lagnado, Anthony; Tchkonia, Tamara; Abraham, Kristin; Dibattista, Amanda; Fridell, Yih-Woei; Howcroft, T. Kevin; Jhappan, Chamelli; Montes, Viviana Perez; Prabhudas, Mercy; Resat, Haluk; Taylor, Veronica; Kumar, Manoj; Cigarroa, Francisco; Cohn, Rachel; Cortes, Tiffany M.; Courtois, Elise; Chuang, Jeffrey; Dave, Monica; Domanskyi, Sergii; Enninga, Elizabeth Ann Lieser; Eryilmaz, Giray Naim; Espinoza, Sara E.; Gelfond, Jon; Kirkland, James; Kuo, Chia-Ling; Lehman, Julia S.; Aguayo-Mazzucato, Cristina; Meves, Alexander; Rani, Meenakshi; Sanders, Shane; Thibodeau, Asa; Tullius, Stefan G.; Ucar, Duygu; White, Brian; Wu, Qian; Xu, Ming; Yamaguchi, Seiji; Assarzadegan, Naziheh; Cho, Chun-Seok; Hwang, Irene; Hwang, Yongha; Xi, Jingyue; Adeyi, Oyedele A.; Aliferis, Constantin F.; Bartolomucci, Alessandro; Dong, Xiao; DuFresne-To, Mickayla J.; Ikramuddin, Sayeed; Johnson, Steve G.; Nelson, Andrew C.; Revelo, Xavier S.; Trevilla-Garcia, Claudia; Sedivy, John M.; Thompson, Elizabeth L.; Robbins, Paul D.; Wang, Jinhua; Aird, Katherine M.; Alder, Jonathan K.; Beaulieu, Delphine; Bueno, Marta; Calyeca, Jazmin; Chamucero-Millaris, Julian A.; Chan, Stephen Y.; Chung, Dongjun; Corbett, Anthony; Gorbunova, Vera; Gowdy, Kymberly M.; Gurkar, Aditi; Horowitz, Jeffrey C.; Hu, Qianjiang; Kaur, Gagandeep; Khaliullin, Timur O.; Lafyatis, Robert; Lanna, Serafina; Li, Dongmei; Ma, Anjun; Morris, Alison; Muthumalage, Thivanka M.; Peters, Victor; Pryhuber, Gloria S.; Reader, Brenda F.; Rosas, Lorena; Sembrat, John C.; Shaikh, Sadiya; Shi, Hangchuan; Stacey, Sean D.; St Croix, Claudette; Wang, Cankun; Wang, Qixin; Watts, Andrew; Gu, Liangcai; Lin, Yiing; Rabinovitch, Peter S.; Sweetwyne, Mariya T.; Artyomov, Maxim N.; Ballentine, Samuel J.; Chheda, Milan G.; Davies, Sherri R.; DiPersio, John F.; Fields, Ryan C.; Fitzpatrick, James A. J.; Fulton, Robert S.; Imai, Shin-ichiro; Jain, Sanjay; Ju, Tao; Kushnir, Vladimir M.; Link, Daniel C.; Ben Major, Michael; Oh, Stephen T.; Rapp, Daniel; Rettig, Michael P.; Stewart, Shelia A.; Veis, Deborah J.; Vij, Kiran R.; Wendl, Michael C.; Wyczalkowski, Matthew A.; Craft, Joseph E.; Enninful, Archibald; Farzad, Negin; Gershkovich, Peter; Halene, Stephanie; Kluger, Yuval; VanOudenhove, Jennifer; Xu, Mina; Yang, Junchen; Yang, Mingyu
IF19.4
The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data (vol 13, 2365, 2022)
NATURE COMMUNICATIONS
2022-11-02
3
OAAI
Reiff, Sarah B.; Schroeder, Andrew J.; Kirli, Koray; Cosolo, Andrea; Bakker, Clara; Mercado, Luisa; Lee, Soohyun; Veit, Alexander D.; Balashov, Alexander K.; Vitzthum, Carl; Ronchetti, William; Pitman, Kent M.; Johnson, Jeremy; Ehmsen, Shannon R.; Kerpedjiev, Peter; Abdennur, Nezar; Imakaev, Maxim; Ozturk, Serkan Utku; Camoglu, Ugur; Mirny, Leonid A.; Gehlenborg, Nils; Alver, Burak H.; Park, Peter J.
IF15.7
International electronic health record-derived post-acute sequelae profiles of COVID-19 patients
NPJ DIGITAL MEDICINE
2022-06-29
20
OAAI
Zhang, Harrison G.; Dagliati, Arianna; Abad, Zahra Shakeri Hossein; Xiong, Xin; Bonzel, Clara-Lea; Xia, Zongqi; Tan, Bryce W. Q.; Avillach, Paul; Brat, Gabriel A.; Hong, Chuan; Morris, Michele; Visweswaran, Shyam; Patel, Lav P.; Gutierrez-Sacristan, Alba; Hanauer, David A.; Holmes, John H.; Samayamuthu, Malarkodi Jebathilagam; Bourgeois, Florence T.; L'Yi, Sehi; Maidlow, Sarah E.; Moal, Bertrand; Murphy, Shawn N.; Strasser, Zachary H.; Neuraz, Antoine; Ngiam, Kee Yuan; Loh, Ne Hooi Will; Omenn, Gilbert S.; Prunotto, Andrea; Dalvin, Lauren A.; Klann, Jeffrey G.; Schubert, Petra; Vidorreta, Fernando J. Sanz; Benoit, Vincent; Verdy, Guillaume; Kavuluru, Ramakanth; Estiri, Hossein; Luo, Yuan; Malovini, Alberto; Tibollo, Valentina; Bellazzi, Riccardo; Cho, Kelly; Ho, Yuk-Lam; Tan, Amelia L. M.; Tan, Byorn W. L.; Gehlenborg, Nils; Lozano-Zahonero, Sara; Jouhet, Vianney; Chiovato, Luca; Aronow, Bruce J.; Toh, Emma M. S.; Wong, Wei Gen Scott; Pizzimenti, Sara; Wagholikar, Kavishwar B.; Bucalo, Mauro; Cai, Tianxi; South, Andrew M.; Kohane, Isaac S.; Weber, Griffin M.
IF15.1
Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web
NATURE METHODS
2022-05-11
19
OAAI
Manz, Trevor; Gold, Ilan; Patterson, Nathan Heath; McCallum, Chuck; Keller, Mark S.; Herr, Bruce W., II; Borner, Katy; Spraggins, Jeffrey M.; Gehlenborg, Nils
IF32.1
MITI minimum information guidelines for highly multiplexed tissue images
NATURE METHODS
2022-03-11
33
OAAI
Schapiro, Denis; Yapp, Clarence; Sokolov, Artem; Reynolds, Sheila M.; Chen, Yu-An; Sudar, Damir; Xie, Yubin; Muhlich, Jeremy; Arias-Camison, Raquel; Arena, Sarah; Taylor, Adam J.; Nikolov, Milen; Tyler, Madison; Lin, Jia-Ren; Burlingame, Erik A.; Chang, Young H.; Farhi, Samouil L.; Thorsson, Vesteinn; Venkatamohan, Nithya; Drewes, Julia L.; Pe'er, Dana; Gutman, David A.; Herrmann, Markus D.; Gehlenborg, Nils; Bankhead, Peter; Roland, Joseph T.; Herndon, John M.; Snyder, Michael P.; Angelo, Michael; Nolan, Garry; Swedlow, Jason R.; Schultz, Nikolaus; Merrick, Daniel T.; Mazzili, Sarah A.; Cerami, Ethan; Rodig, Scott J.; Santagata, Sandro; Sorger, Peter K.
IF32.1
International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study (vol 23, e31400, 2021)
2021-11-30
2
OAAI
Weber, Griffin M.; Zhang, Harrison G.; L'Yi, Sehi; Bonzel, Clara-Lea; Hong, Chuan; Avillach, Paul; Gutierrez-Sacristan, Alba; Palmer, Nathan P.; Tan, Amelia Li Min; Wang, Xuan; Yuan, William; Gehlenborg, Nils; Alloni, Anna; Amendola, Danilo F.; Bellasi, Antonio; Bellazzi, Riccardo; Beraghi, Michele; Bucalo, Mauro; Chiovato, Luca; Cho, Kelly; Dagliati, Arianna; Estiri, Hossein; Follett, Robert W.; Barrio, Noelia Garcia; Hanauer, David A.; Henderson, Darren W.; Ho, Yuk-Lam; Holmes, H.; Hutch, Meghan R.; Kavuluru, Ramakanth; Kirchoff, Katie; Klann, Jeffrey G.; Krishnamurthy, Ashok K.; Le, Trang; Liu, Molei; Loh, Ne Hooi Will; Lozano-Zahonero, Sara; Luo, Yuan; Maidlow, Sarah; Makoudjou, Adeline; Malovini, Alberto; Martins, Marcelo Roberto; Moal, Bertrand; Morris, Michele; Mowery, Danielle L.; Murphy, Shawn N.; Neuraz, Antoine; Ngiam, Kee Yuan; Okoshi, Marina P.; Omenn, Gilbert S.; Patel, Lav P.; Jimenez, Miguel Pedrera; Prudente, Robson A.; Samayamuthu, Malarkodi Jebathilagam; Vidorreta, Fernando J. Sanz; Schriver, Emily R.; Schubert, Petra; Balazote, Pablo Serrano; Tan, Byorn W. L.; Tanni, E.; Tibollo, Valentina; Visweswaran, Shyam; Wagholikar, Kavishwar B.; Xia, Zongqi; Zoeller, Daniela; Kohane, Isaac S.; Cai, Tianxi; South, Andrew M.; Brat, Gabriel A.
Research Directions
No research directions

