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Ajit J. Nirmal

Harvard Medical School

18H-index
102Paper Count
2.0KCitation Count
Published Papers 21
Publication Date
Live-cell Pick-Seq (LiP-Seq): Interrogating ultra-rare mantle cell lymphoma persistent cells after CART19 therapy
err2026-03-23
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errRan Xu; Gongwei Wu; Siobhan Rice; Matthew Booker; Jenalyn Weekes; Hayden Bell; Yifei Gao; Ajit J. Nirmal; Huiyun Liu; Zoe Ciantra; Qingyu Luo; Amanda Fortune; Karley Whalen; Timothy Guanci; Yifei Wan; Abner Louissaint; Joshua J. Nordberg; Jia-Ren Lin; Michael Hemann; Scott R. Manalis
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CRATER tumor niches facilitate CD8+ T cell engagement and correspond with immunotherapy success
errCell
IF42.5
err2025-10-17
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errOAAI
errAya Ludin; Georgia L. Stirtz; Asaf Tal; Ajit J. Nirmal; Kathleen L. Pfaff; Michael Manos; Naomi Besson; Nebiyat Eskndir; Billie Porter; Stephanie M. Jones; Hannah M. Faulkner; Qiyu Gong; Sophia Liu; Irving Barrera; Lijian Wu; Cecilia Pessoa Rodrigues; Aditi Sahu; Elizabeth Jerison; Joao V. Alessi; Biagio Ricciuti; Douglas S. Richardson; Jodi D. Weiss; Hadley M. Moreau; Meredith E. Stanhope; Alexander B. Afeyan; James Sefton; Wyatt D. McCall; Emily Formato; Song Yang; Yi Zhou; David P. Hoytema van Konijnenburg; Hannah L. Cole; Miguel Cordova; Liang Deng; Milind Rajadhyaksha; Stephen R. Quake; Mark M. Awad; Fei Chen; Kai W. Wucherpfennig; Peter K. Sorger; F. Stephen Hodi; Scott J. Rodig; George F. Murphy; Leonard I. Zon
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Highly multiplexed 3D profiling of cell states and immune niches in human tumors
err2025-09-29
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errClarence Yapp; Ajit J. Nirmal; Felix Zhou; Alex Y. H. Wong; Juliann B. Tefft; Yi Daniel Lu; Zhiguo Shang; Zoltan Maliga; Paula Montero Llopis; George F. Murphy; Christine G. Lian; Gaudenz Danuser; Sandro Santagata; Peter K. Sorger
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Author Correction: Duvelisib plus romidepsin in relapsed/refractory T cell lymphomas: a phase 1b/2a trial
err2024-11-15
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errHorwitz, Steven M.; Nirmal, Ajit J.; Rahman, Jahan; Xu, Ran; Drill, Esther; Galasso, Natasha; Ganesan, Nivetha; Davey, Theresa; Hancock, Helen; Perez, Leslie; Maccaro, Catherine; Bahgat, Alexandra; Marzouk, Evan; Cathcart, Elizabeth; Moskowitz, Alison; Noy, Ariela; Kumar, Anita; Jacobsen, Eric; Fisher, David C.; Mehta-Shah, Neha; Kim, Youn H.; Khodadoust, Michael; Kotlov, Nikita; Nikitina, Anastasia; Kudryashova, Olga; Zubareva, Valeria; Zornikova, Ksenia; Shin, Nara; Sorokina, Maria; Degryse, Sandrine; Postovalova, Ekaterina; Bagaev, Aleksander; Hosszu, Kinga; Mcavoy, Devin; Boelens, Jaap J.; Wu, Wenchao; Ciantra, Zoe; Appelt, Jackson W.; Trevisani, Christopher; Amaka, Sam; Weinstock, David M.; Vardhana, Santosha A.
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Immune Profiling of Dermatologic Adverse Events from Checkpoint Blockade Using Tissue Cyclic Immunofluorescence: A Pilot Study
err2024-08-01
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PREAI
errMaliga, Zoltan; Kim, Daniel Y.; Bui, Ai-Tram N.; Lin, Jia-Ren; Dewan, Anna K.; Jadeja, Saagar; Murphy, George F.; Nirmal, Ajit J.; Lian, Christine G.; Sorger, Peter K.; LeBoeuf, Nicole R.
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Duvelisib plus romidepsin in relapsed/refractory T cell lymphomas: a phase 1b/2a trial
err2024-06-17
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PREAI
errHorwitz, Steven M.; Nirmal, Ajit J.; Rahman, Jahan; Xu, Ran; Drill, Esther; Galasso, Natasha; Ganesan, Nivetha; Davey, Theresa; Hancock, Helen; Perez, Leslie; Maccaro, Catherine; Bahgat, Alexandra; Marzouk, Evan; Cathcart, Elizabeth; Moskowitz, Alison; Noy, Ariela; Kumar, Anita; Jacobsen, Eric; Fisher, David C.; Mehta-Shah, Neha; Kim, Youn H.; Khodadoust, Michael; Kotlov, Nikita; Nikitina, Anastasia; Kudryashova, Olga; Zubareva, Valeria; Zornikova, Ksenia; Shin, Nara; Sorokina, Maria; Degryse, Sandrine; Postovalova, Ekaterina; Bagaev, Aleksander; Hosszu, Kinga; Mcavoy, Devin; Boelens, Jaap J.; Wu, Wenchao; Ciantra, Zoe; Appelt, Jackson W.; Trevisani, Christopher; Amaka, Sam; Weinstock, David M.; Vardhana, Santosha A.
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SpatialCells: automated profiling of tumor microenvironments with spatially resolved multiplexed single-cell data
err2024-05-02
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errWan, Guihong; Maliga, Zoltan; Yan, Boshen; Vallius, Tuulia; Shi, Yingxiao; Khattab, Sara; Chang, Crystal; Nirmal, Ajit J.; Yu, Kun-Hsing; Liu, David; Lian, Christine G.; DeSimone, Mia S.; Sorger, Peter K.; Semenov, Yevgeniy R.
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CD8+T-cell interplay with myeloid cells as spatial determinant of chemotherapy response in the tumor microenvironment of metastatic high- grade serous ovarian cancer
err2024-03-04
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PREAI
errLaunonen, Inga-Maria P.; Erkan, Erdogan P.; Niemiec, Iga; Mencia, Ada Junquera; Szabo, Angela; Perez, Fernando; Kahelin, Essi; Hautaniemi, Sampsa; Oikkonen, Jaana; Hynninen, Johanna; Virtanen, Anni; Vallius, Tuulia; Nirmal, Ajit J.; Sorger, Peter; Vaharautio, Anna; Farkkila, Anniina
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Development and validation of time-to-event models to predict metastatic recurrence of localized cutaneous melanoma
err2024-02-01
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errWan, Guihong; Leung, Bonnie W.; Desimone, Mia S.; Nguyen, Nga; Rajeh, Ahmad; Collier, Michael R.; Rashdan, Hannah; Roster, Katie; Zhou, Xu; Moseley, Cameron B.; Nirmal, Ajit J.; Pelletier, Roxanne J.; Maliga, Zoltan; Marko, Gyorgy; Nemeth, Istvan Balazs; Tsao, Hensin; Asgari, Maryam M.; Gusev, Alexander; Stagner, Anna M.; Lian, Christine G.; Hurlbert, Marc S.; Liu, Feng; Yu, Kun-Hsing; Sorger, Peter K.; Semenov, Yevgeniy R.
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The 2023 generation
err2023-12-15
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PREAI
errAchinger-Kawecka, Joanna; Correa, Santiago; Hu, Jing; Li, Gaopeng; Lindeboom, Rik G. H.; Misale, Sandra; Monkkonen, Teresa; Nirmal, Ajit J.; Prekovic, Stefan; Sinha, Sanju; Trigos, Anna S.; Watson, Caroline J.
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TP63 fusions drive multicomplex enhancer rewiring, lymphomagenesis, and EZH2 dependence
err2023-09-20
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errOAAI
errWu, Gongwei; Yoshida, Noriaki; Liu, Jihe; Zhang, Xiaoyang; Xiong, Yuan; Heavican-Foral, Tayla B.; Mandato, Elisa; Liu, Huiyun; Nelson, Geoffrey M.; Yang, Lu; Chen, Renee; Donovan, Katherine A.; Jones, Marcus K.; Roshal, Mikhail; Zhang, Yanming; Xu, Ran; Nirmal, Ajit J.; Jain, Salvia; Leahy, Catharine; Jones, Kristen L.; Stevenson, Kristen E.; Galasso, Natasha; Ganesan, Nivetha; Chang, Tiffany; Wu, Wen-Chao; Louissaint, Abner; Debaize, Lydie; Yoon, Hojong; Dal Cin, Paola; Chan, Wing C.; Ho Sui, Shannan J.; Ng, Samuel Y.; Feldman, Andrew L.; Horwitz, Steven M.; Adelman, Karen; Fischer, Eric S.; Chen, Chun-Wei; Weinstock, David M.; Brown, Myles
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Single-cell spatial dynamics of the tumor-immune microenvironment of high-grade serous ovarian cancer during neoadjuvant chemotherapy
err2023-04-04
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PREAI
errLaunonen, Inga-Maria Pauliina; Szabo, Angela; Perez, Fernando; Casado, Julia; Maliga, Zoltan; Hautaniemi, Sampsa; Oikkonen, Jaana; Hynninen, Johanna; Vallius, Tuulia; Nirmal, Ajit Johnson; Sorger, Peter; Vaharautio, Anna; Farkkila, Anniina
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Intratumoral lymphocyte networks harbor TCF1+PD1+progenitor CD8 T cells in lung cancer
err2023-04-04
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PREAI
errBurger, Megan L.; Gaglia, Giorgio; Ritch, Claire C.; Rammos, Danae; Dai, Yang; Crossland, Grace E.; Tavana, Sara Z.; Warchol, Simon; Jaeger, Alex M.; Naranjo, Santiago; Coy, Shannon; Nirmal, Ajit J.; Krueger, Robert; Lin, Jia-Ren; Pfister, Hanspeter; Sorger, Peter K.; Jacks, Tyler; Santagata, Sandro
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ImmunoPROFILE: A prospective implementation of clinically validated, quantitative immune cell profiling test identifies tumor-infiltrating CD8+ and PD-1+ cell densities as prognostic biomarkers across a 2,023 patient pan-cancer cohort treated with different therapies
err2023-04-04
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PREAI
errLindsay, James; Sharma, Bijaya; Felt, Kristen D.; Giobbie-Hurder, Anita; Dryg, Ian; Weirather, Jason L.; Altreuter, Jennifer; Mazor, Tali; Kumari, Priti; Alessi, Joao V.; Nirmal, Ajit J.; Manos, Michael P.; Kumar, Ananth R.; Lotter, William; Cerami, Ethan; Johnson, Burce E.; Lindeman, Neil I.; Sholl, Lynette M.; Nowak, Jonathan A.
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TP63 fusions drive enhancer rewiring, lymphomagenesis, and dependence on EZH2
err2023-04-04
err0
PREAI
errWu, Gongwei; Yoshida, Noriaki; Liu, Jihe; Zhang, Xiaoyang; Xiong, Yuan; Heavican-Foral, Tayla; Liu, Huiyun; Nelson, Geoffrey; Yang, Lu; Chen, Renee; Donovan, Katherine; Jones, Marcus; Roshal, Mikhail; Zhang, Yanming; Xu, Ran; Nirmal, Ajit; Jain, Salvia; Leahy, Catharine; Jones, Kristen; Stevenson, Kristen; Galasso, Natasha; Ganesan, Nivetha; Chang, Tiffany; Wu, Wen-Chao; Louissaint, Abner; Debaize, Lydie; Yoon, Hojong; Dal Cin, Paola; Chan, Wing Chan; Sui, Shannan Ho Ho Sui; Ng, Samuel; Feldman, Andrew; Horwitz, Steven M.; Meyerson, Mathew; Adelman, Karen; Fischer, Eric; Chen, Chun-Wei; Weinstock, David; Brown, Myles
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Multiplexed and reproducible high content screening of live and fixed cells using Dye Drop
err2022-11-14
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errOAAI
errMills, Caitlin E.; Subramanian, Kartik; Hafner, Marc; Niepel, Mario; Gerosa, Luca; Chung, Mirra; Victor, Chiara; Gaudio, Benjamin; Yapp, Clarence; Nirmal, Ajit J.; Clark, Nicholas; Sorger, Peter K.
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The Spatial Landscape of Progression and Immunoediting in Primary Melanoma at Single-Cell Resolution
err2022-04-04
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errNirmal, Ajit J.; Maliga, Zoltan; Vallius, Tuulia; Quattrochi, Brian; Chen, Alyce A.; Jacobson, Connor A.; Pelletier, Roxanne J.; Yapp, Clarence; Arias-Camison, Raquel; Chen, Yu-An; Lian, Christine G.; Murphy, George F.; Santagata, Sandro; Sorger, Peter K.
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MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
err2021-11-25
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errSchapiro, Denis; Sokolov, Artem; Yapp, Clarence; Chen, Yu-An; Muhlich, Jeremy L.; Hess, Joshua; Creason, Allison L.; Nirmal, Ajit J.; Baker, Gregory J.; Nariya, Maulik K.; Lin, Jia-Ren; Maliga, Zoltan; Jacobson, Connor A.; Hodgman, Matthew W.; Ruokonen, Juha; Farhi, Samouil L.; Abbondanza, Domenic; McKinley, Eliot T.; Persson, Daniel; Betts, Courtney; Sivagnanam, Shamilene; Regev, Aviv; Goecks, Jeremy; Coffey, Robert J.; Coussens, Lisa M.; Santagata, Sandro; Sorger, Peter K.
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Macrophage colony-stimulating factor increases hepatic macrophage content, liver growth, and lipid accumulation in neonatal rats
err2018-03-01
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errPridans, Clare; Sauter, Kristin A.; Irvine, Katharine M.; Davis, Gemma M.; Lefevre, Lucas; Raper, Anna; Rojo, Rocio; Nirmal, Ajit J.; Beard, Philippa; Cheeseman, Michael; Hume, David A.
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Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders
err2017-02-24
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errShih, Barbara B.; Nirmal, Ajit J.; Headon, Denis J.; Akbar, Arne N.; Mabbott, Neil A.; Freeman, Tom C.
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