Not logged in proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomes Fullam, Anthony; Letunic, Ivica; Maistrenko, Oleksandr M.; Castro, Alexandre Areias; Coelho, Luis Pedro; Grekova, Anastasiia; Schudoma, Christian; Khedkar, Supriya; Robbani, Mahdi; Kuhn, Michael; Schmidt, Thomas S. B.; Bork, Peer; Mende, Daniel R. Share Save
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SPIRE: a Searchable, Planetary-scale mIcrobiome REsource Schmidt, Thomas S. B.; Fullam, Anthony; Ferretti, Pamela; Orakov, Askarbek; Maistrenko, Oleksandr M.; Ruscheweyh, Hans-Joachim; Letunic, Ivica; Duan, Yiqian; Van Rossum, Thea; Sunagawa, Shinichi; Mende, Daniel R.; Finn, Robert D.; Kuhn, Michael; Pedro Coelho, Luis; Bork, Peer Share Save
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes Fullam, Anthony; Letunic, Ivica; Schmidt, Thomas S. B.; Ducarmon, Quinten R.; Karcher, Nicolai; Khedkar, Supriya; Kuhn, Michael; Larralde, Martin; Maistrenko, Oleksandr M.; Malfertheiner, Lukas; Milanese, Alessio; Rodrigues, Joao Frederico Matias; Sanchis-Lopez, Claudia; Schudoma, Christian; Szklarczyk, Damian; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; von Mering, Christian; Bork, Peer; Mende, Daniel R. Share Save
eggNOG 6.0: enabling comparative genomics across 12 535 organisms Hernandez-Plaza, Ana; Szklarczyk, Damian; Botas, Jorge; Cantalapiedra, Carlos P.; Giner-Lamia, Joaquin; Mende, Daniel R.; Kirsch, Rebecca; Rattei, Thomas; Letunic, Ivica; Jensen, Lars J.; Bork, Peer; von Mering, Christian; Huerta-Cepas, Jaime Share Save
InterPro in 2022 Paysan-Lafosse, Typhaine; Blum, Matthias; Chuguransky, Sara; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Bork, Peer; Bridge, Alan; Colwell, Lucy; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex Share Save
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes Khedkar, Supriya; Smyshlyaev, Georgy; Letunic, Ivica; Maistrenko, Oleksandr M.; Coelho, Luis Pedro; Orakov, Askarbek; Forslund, Sofia K.; Hildebrand, Falk; Luetge, Mechthild; Schmidt, Thomas S. B.; Barabas, Orsolya; Bork, Peer Share Save
Microbiome and metabolome features of the cardiometabolic disease spectrum Fromentin, Sebastien; Forslund, Sofia K.; Chechi, Kanta; Aron-Wisnewsky, Judith; Chakaroun, Rima; Nielsen, Trine; Tremaroli, Valentina; Ji, Boyang; Prifti, Edi; Myridakis, Antonis; Chilloux, Julien; Andrikopoulos, Petros; Fan, Yong; Olanipekun, Michael T.; Alves, Renato; Adiouch, Solia; Bar, Noam; Talmor-Barkan, Yeela; Belda, Eugeni; Caesar, Robert; Coelho, Luis Pedro; Falony, Gwen; Fellahi, Soraya; Galan, Pilar; Galleron, Nathalie; Helft, Gerard; Hoyles, Lesley; Isnard, Richard; Le Chatelier, Emmanuelle; Julienne, Hanna; Olsson, Lisa; Pedersen, Helle Krogh; Pons, Nicolas; Quinquis, Benoit; Rouault, Christine; Roume, Hugo; Salem, Joe-Elie; Schmidt, Thomas S. B.; Vieira-Silva, Sara; Li, Peishun; Zimmermann-Kogadeeva, Maria; Lewinter, Christian; Sondertoft, Nadja B.; Hansen, Tue H.; Gauguier, Dominique; Gotze, Jens Peter; Kober, Lars; Kornowski, Ran; Vestergaard, Henrik; Hansen, Torben; Zucker, Jean-Daniel; Hercberg, Serge; Letunic, Ivica; Backhed, Fredrik; Oppert, Jean-Michel; Nielsen, Jens; Raes, Jeroen; Bork, Peer; Stumvoll, Michael; Segal, Eran; Clement, Karine; Dumas, Marc-Emmanuel; Ehrlich, S. Dusko; Pedersen, Oluf Share Save
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The InterPro protein families and domains database: 20 years on Blum, Matthias; Chang, Hsin-Yu; Chuguransky, Sara; Grego, Tiago; Kandasaamy, Swaathi; Mitchell, Alex; Nuka, Gift; Paysan-Lafosse, Typhaine; Qureshi, Matloob; Raj, Shriya; Richardson, Lorna; Salazar, Gustavo A.; Williams, Lowri; Bork, Peer; Bridge, Alan; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex; Finn, Robert D. Share Save
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proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes Mende, Daniel R.; Letunic, Ivica; Maistrenko, Oleksandr M.; Schmidt, Thomas S. B.; Milanese, Alessio; Paoli, Lucas; Hernandez-Plaza, Ana; Orakov, Askarbek N.; Forslund, Sofia K.; Sunagawa, Shinichi; Zeller, Georg; Huerta-Cepas, Jaime; Coelho, Luis Pedro; Bork, Peer Share Save
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses Huerta-Cepas, Jaime; Szklarczyk, Damian; Heller, Davide; Hernandez-Plaza, Ana; Forslund, Sofia K.; Cook, Helen; Mende, Daniel R.; Letunic, Ivica; Rattei, Thomas; Jensen, Lars J.; von Mering, Christian; Bork, Peer Share Save
InterPro in 2019: improving coverage, classification and access to protein sequence annotations Mitchell, Alex L.; Attwood, Teresa K.; Babbitt, Patricia C.; Blum, Matthias; Bork, Peer; Bridge, Alan; Brown, Shoshana D.; Chang, Hsin-Yu; El-Gebali, Sara; Fraser, Matthew I.; Gough, Julian; Haft, David R.; Huang, Hongzhan; Letunic, Ivica; Lopez, Rodrigo; Luciani, Aurelien; Madeira, Fabio; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine; Pandurangan, Arun P.; Paysan-Lafosse, Typhaine; Pesseat, Sebastien; Potter, Simon C.; Qureshi, Matloob A.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna J.; Rivoire, Catherine; Salazar, Gustavo A.; Sangrador-Vegas, Amaia; Sigrist, Christian J. A.; Sillitoe, Ian; Sutton, Granger G.; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Yong, Siew-Yit; Finn, Robert D. Share Save
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