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Trevor Bedford

university of washington

64H-index
291Paper Count
2.2WCitation Count
Published Papers 88
Publication Date
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High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains
erreLife
IF0
err2026-02-23
err2
PREAI
errKikawa, Caroline; Loes, Andrea N.; Huddleston, John; Figgins, Marlin D.; Steinberg, Philippa; Griffiths, Tachianna; Drapeau, Elizabeth M.; Peck, Heidi; Barr, Ian; Englund, Janet A.; Hensley, Scott E.; Bedford, Trevor; Bloom, Jesse D.
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errSave
Nomenclature for Tracking of Genetic Variation of Seasonal Influenza Viruses
errInfluenza and Other Respiratory Viruses
IF4.2
err2026-02-13
err0
errOAAI
errRichard A. Neher; John Huddleston; Trevor Bedford; Nicola S. Lewis; Ruth Harvey; Monica Galiano; Alexander M. P. Byrne; Sarah James; Derek Smith; Marta Łuksza; Denis Ruchnewitz; Michael Laessig; Seiichiro Fujisaki; Shinji Watanabe; Hideki Hasegawa; Norman Hassell; David E. Wentworth; Rebecca Kondor; Yi Mo Deng; Clyde Dapat; Kanta Subbarao; Ian Barr
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errSave
Timely vaccine strain selection and genomic surveillance improve evolutionary forecast accuracy of seasonal influenza A/H3N2
errELIFE
IF0
err2025-12-04
err0
PREAI
errHuddleston, John; Bedford, Trevor
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errSave
Quantifying plasmid movement in drug-resistant Shigella species using phylodynamic inference
errPLOS PATHOGENS
IF4.9
err2025-12-01
err0
PREAI
errMuller, Nicola F.; Wick, Ryan R.; Judd, Louise M.; Williamson, Deborah A.; Bedford, Trevor; Howden, Benjamin P.; Duchene, Sebastian; Ingle, Danielle J.
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errSave
Seasonal Influenza Viruses Show Distinct Adaptive Dynamics During Growth in Chicken Eggs
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-10-01
err0
errOAAI
errKistler, Kathryn; Bedford, Trevor
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errSave
Fine-scale patterns of SARS-CoV-2 spread from identical pathogen sequences
errNature
IF48.5
err2025-03-05
err0
errOAAI
errCécile Tran-Kiem; Miguel I. Paredes; Amanda C. Perofsky; Lauren A. Frisbie; Hong Xie; Kevin Kong; Amelia Weixler; Alexander L. Greninger; Pavitra Roychoudhury; JohnAric M. Peterson; Andrew Delgado; Holly Halstead; Drew MacKellar; Philip Dykema; Luis Gamboa; Chris D. Frazar; Erica Ryke; Jeremy Stone; David Reinhart; Lea Starita; Allison Thibodeau; Cory Yun; Frank Aragona; Allison Black; Cécile Viboud; Trevor Bedford
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errSave
SARS-CoV-2 Diversity and Transmission on a University Campus across Two Academic Years during the Pandemic
errCLINICAL CHEMISTRY
IF6.3
err2025-01-03
err0
PREAI
errCasto, Amanda M.; Paredes, Miguel I.; Bennett, Julia C.; Luiten, Kyle G.; Han, Peter D.; Gamboa, Luis S.; Mcdermot, Evan; Gottlieb, Geoffrey S.; Acker, Zachary; Lo, Natalie K.; Mcdonald, Devon; Mccaffrey, Kathryn M.; Figgins, Marlin D.; Lockwood, Christina M.; Shendure, Jay; Uyeki, Timothy M.; Starita, Lea M.; Bedford, Trevor; Chu, Helen Y.; Weil, Ana A.
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errSave
Near real-time data on the human neutralizing antibody landscape to influenza virus to inform vaccine-strain selection in September 2025
errVIRUS EVOLUTION
IF4
err2025-01-01
err0
errOAAI
errKikawa, Caroline; Huddleston, John; Loes, Andrea N.; Turner, Sam A.; Lee, Jover; Barr, Ian G.; Cowling, Benjamin J.; Englund, Janet A.; Greninger, Alexander L.; Harvey, Ruth; Hasegawa, Hideki; Ho, Faith; Lacombe, Kirsten; Leung, Nancy H. L.; Lewis, Nicola S.; Peck, Heidi; Watanabe, Shinji; Smith, Derek J.; Bedford, Trevor; Bloom, Jesse D.
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errSave
Integrating dynamical modeling and phylogeographic inference to characterize global influenza circulation
errPNAS NEXUS
IF3.8
err2024-12-17
err0
errOAAI
errParino, Francesco; Gustani-Buss, Emanuele; Bedford, Trevor; Suchard, Marc A.; Trovao, Nidia S.; Rambaut, Andrew; Colizza, Vittoria; Poletto, Chiara; Lemey, Philippe
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errSave
Dimensionality reduction distills complex evolutionary relationships in seasonal influenza and SARS-CoV-2
errVIRUS EVOLUTION
IF4
err2024-11-14
err0
errOAAI
errNanduri, Sravani; Black, Allison; Bedford, Trevor; Huddleston, John
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errSave
Clinical and Genomic Epidemiology of Coxsackievirus A21 and Enterovirus D68 in Homeless Shelters, King County, Washington, USA, 2019-2021
errEMERGING INFECTIOUS DISEASES
IF6.6
err2024-11-01
err0
PREAI
errCox, Sarah N.; Casto, Amanda M.; Franko, Nicholas M.; Chow, Eric J.; Han, Peter D.; Gamboa, Luis; Pfau, Brian; Xie, Hong; Kong, Kevin; Sereewit, Jaydee; Rolfes, Melissa A.; Mosites, Emily; Uyeki, Timothy M.; Greninger, Alexander L.; Carone, Marco; Shim, M. Mia; Bedford, Trevor; Shendure, Jay; Boeckh, Michael; Englund, Janet A.; Starita, Lea M.; Roychoudhury, Pavitra; Chu, Helen Y.
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errSave
High-throughput sequencing-based neutralization assay reveals how repeated vaccinations impact titers to recent human H1N1 influenza strains
errJOURNAL OF VIROLOGY
IF3.8
err2024-10-22
err1
errOAAI
errLoes, Andrea N.; Tarabi, Rosario Araceli L.; Huddleston, John; Touyon, Lisa; Wong, Sook San; Cheng, Samuel M. S.; Leung, Nancy H. L.; Hannon, William W.; Bedford, Trevor; Cobey, Sarah; Cowling, Benjamin J.; Bloom, Jesse D.
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errSave
Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States
errELIFE
IF0
err2024-09-25
err4
errOAAI
errPerofsky, Amanda C.; Huddleston, John; Hansen, Chelsea L.; Barnes, John R.; Rowe, Thomas; Xu, Xiyan; Kondor, Rebecca; Wentworth, David E.; Lewis, Nicola; Whittaker, Lynne; Ermetal, Burcu; Harvey, Ruth; Galiano, Monica; Daniels, Rodney Stuart; McCauley, John W.; Fujisaki, Seiichiro; Nakamura, Kazuya; Kishida, Noriko; Watanabe, Shinji; Hasegawa, Hideki; Sullivan, Sheena G.; Barr, Ian G.; Subbarao, Kanta; Krammer, Florian; Bedford, Trevor; Viboud, Cecile
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errSave
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution (vol 15, 3207, 2024)
errNATURE COMMUNICATIONS
IF15.7
err2024-09-18
err1
errOAAI
errWagner, Cassia; Kistler, Kathryn E.; Perchetti, Garrett A.; Baker, Noah; Frisbie, Lauren A.; Torres, Laura Marcela; Aragona, Frank; Yun, Cory; Figgins, Marlin; Greninger, Alexander L.; Cox, Alex; Oltean, Hanna N.; Roychoudhury, Pavitra; Bedford, Trevor
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errSave
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years
errNATURE COMMUNICATIONS
IF15.7
err2024-05-16
err4
errOAAI
errPerofsky, Amanda C.; Hansen, Chelsea L.; Burstein, Roy; Boyle, Shanda; Prentice, Robin; Marshall, Cooper; Reinhart, David; Capodanno, Ben; Truong, Melissa; Schwabe-Fry, Kristen; Kuchta, Kayla; Pfau, Brian; Acker, Zack; Lee, Jover; Sibley, Thomas R.; McDermot, Evan; Rodriguez-Salas, Leslie; Stone, Jeremy; Gamboa, Luis; Han, Peter D.; Adler, Amanda; Waghmare, Alpana; Jackson, Michael L.; Famulare, Michael; Shendure, Jay; Bedford, Trevor; Chu, Helen Y.; Englund, Janet A.; Starita, Lea M.; Viboud, Cecile
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errSave
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution
errNATURE COMMUNICATIONS
IF15.7
err2024-04-13
err4
errOAAI
errWagner, Cassia; Kistler, Kathryn E.; Perchetti, Garrett A.; Baker, Noah; Frisbie, Lauren A.; Torres, Laura Marcela; Aragona, Frank; Yun, Cory; Figgins, Marlin; Greninger, Alexander L.; Cox, Alex; Oltean, Hanna N.; Roychoudhury, Pavitra; Bedford, Trevor
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errSave
Estimating the reproduction number and transmission heterogeneity from the size distribution of clusters of identical pathogen sequences
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-04-03
err2
errOAAI
errTran -Kiem, Cecile; Bedford, Trevor
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errSave
Comparative Diagnostic Utility of SARS-CoV-2 Rapid Antigen and Molecular Testing in a Community Setting
errJOURNAL OF INFECTIOUS DISEASES
IF4.5
err2024-03-26
err2
PREAI
errKim, Ashley E.; Bennett, Julia C.; Luiten, Kyle; O'Hanlon, Jessica A.; Wolf, Caitlin R.; Magedson, Ariana; Han, Peter D.; Acker, Zack; Regelbrugge, Lani; Mccaffrey, Kathryn M.; Stone, Jeremey; Reinhart, David; Capodanno, Benjamin J.; Morse, Stephen S.; Bedford, Trevor; Englund, Janet A.; Boeckh, Michael; Starita, Lea M.; Uyeki, Timothy M.; Carone, Marco; Weil, Ana; Chu, Helen Y.
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errSave
Bayesian phylodynamics to quantify cancer growth across space and time
errCANCER RESEARCH
IF16.6
err2024-02-01
err0
PREAI
errLewinsohn, Maya; Bedford, Trevor; Muller, Nicola F.; Feder, Alison
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errSave
Changing genomic epidemiology of COVID-19 in long-term care facilities during the 2020-2022 pandemic, Washington State
errBMC PUBLIC HEALTH
IF3.6
err2024-01-15
err1
errOAAI
errOltean, Hanna N.; Black, Allison; Lunn, Stephanie M.; Smith, Nailah; Templeton, Allison; Bevers, Elyse; Kibiger, Lynae; Sixberry, Melissa; Bickel, Josina B.; Hughes, James P.; Lindquist, Scott; Baseman, Janet G.; Bedford, Trevor
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Research Directions

No research directions
Co-authors
Cooperation Journals
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Dennis R. Burton
H-index: 172 · Papers: 800
J
Jay Shendure
H-index: 167 · Papers: 662
L
Lawrence Corey
H-index: 162 · Papers: 1.2K
A
Andrew Rambaut
H-index: 150 · Papers: 521
K
Kevin Marsh
H-index: 132 · Papers: 695
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