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Tommi Vatanen

university of helsinki
H-index:41
Citation Count:1.7万
Views:0

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LGTM: Gaussian process modulated neural topic modeling for longitudinal microbiome

LGTM：高斯过程调制神经主题模型用于纵向微生物组研究

Gut Microbes
IF11
2026-10-050
OA
Xiao Yuan; Ádám Arany; András Formanek; Yves Moreau; Harri Lähdesmäki; Tommi Vatanen
Gut microbiome maturation in early childhood interacts with host genetics to predict type 1 diabetes risk

早期儿童肠道微生物组成熟与宿主基因相互作用以预测1型糖尿病风险

Nature Metabolism
IF20.8
2026-09-210
OAAI
Danyue Dong; Aaron M. Walsh; Tommi Vatanen; George Weingart; Mondher Khdhiri; Meir J. Stampfer; Kendra Vehik; Eric A. Franzosa; Curtis Huttenhower; Dong D. Wang
Nutrient intake, gut inflammation markers, and intestinal permeability in infants aged 6-12 months

6-12个月龄婴儿的营养摄入、肠道炎症标志物和肠道通透性

Clinical Nutrition
IF7.4
2026-07-010
PRE
Salo, Tuuli E. I.; Lalli, Marianne; Honkanen, Jarno; Ruohtula, Terhi; Mattila, Markus; Koreasalo, Mirva; Akerlund, Mari; Ilonen, Jorma; Vatanen, Tommi; Knip, Mikael; Hakola, Leena; Virtanen, Suvi M.
Phosphorothioate DNA modification by BREX type 4 systems in the human gut microbiome

人类肠道微生物组中BREX 4型系统对硫代磷酸酯DNA的修饰

Nature Communications
IF15.7
2026-01-220
OAAI
Yifeng Yuan; Michael S. DeMott; Shane R. Byrne; Katia Flores; Mathilde Poyet; Mathieu Groussin; Brittany Berdy; John Rusine Bahunde; Catherine Girard; Jenni Lehtimäki; Audax Z. P. Mabulla; Ivan Emil Mwikarago; Yvonne Ayerki Nartey; Le Thanh Tu Nguyen; Charles A. Onyekwere; Lewis R. Roberts; B. Jesse Shapiro; Tommi Vatanen; Laurie E. Comstock; Eric J. Alm; Peter C. Dedon
Cohort-specific determinants of donor strain engraftment following multi-donor faecal microbiota transplantation in two randomised clinical trials

两项随机临床试验中多供体粪便微生物群移植后供体菌株植入的队列特异性决定因素

Gut Microbes
IF11
2025-12-110
OA
Anna H. Behling; Theo Portlock; Daniel Ho; Brooke C. Wilson; Sudarshan Paramsothy; Michael A. Kamm; Wayne S. Cutfield; Nadeem O. Kaakoush; Justin M. O’Sullivan; Tommi Vatanen
Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity

微生物组衍生的胆汁酸特征与早期生命中的胰岛自身免疫相关性

Nature Communications
IF15.7
2025-12-030
OAAI
Santosh Lamichhane; Alex M. Dickens; Tanja Buchacher; Tianai Lou; Vincent Charron-Lamoureux; Roosa Kattelus; Pragya Karmacharya; Lucas Pinto da Silva; Matilda Kråkström; Omid Rasool; Partho Sen; Corinn Walker; Abubaker Patan; Emily C. Gentry; Simone Zuffa; Aron Arzoomand; Tadepally Lakshmikanth; Jaromir Mikeš; Aman Mebrahtu; Tommi Vatanen; Manuela Raffatellu; Karsten Zengler; Tuulia Hyötyläinen; Ramnik J. Xavier; Petter Brodin; Riitta Lahesmaa; Pieter C. Dorrestein; Mikael Knip; Matej Orešič
Protein language models uncover carbohydrate-active enzyme function in metagenomics

蛋白质语言模型揭示宏基因组中碳水化合物活性酶的功能

BMC Bioinformatics
IF3.3
2025-11-260
OAAI
Kumar Thurimella; Ahmed M. T. Mohamed; Chenhao Li; Tommi Vatanen; Daniel B. Graham; Róisín M. Owens; Sabina Leanti La Rosa; Damian R. Plichta; Sergio Bacallado; Ramnik J. Xavier
Long-term health outcomes in adolescents with obesity treated with faecal microbiota transplantation: 4-year follow-up

Wilson, B.C.; Zuppi, M.; Derraik, J.G.B.; Albert, B.B.; Tweedie-Cullen, R.Y.; Leong, K.S.W.; Beck, K.L.; Vatanen, T.; O’Sullivan, J.M.; Cutfield, W.S.; et al. 肥胖青少年接受粪菌移植治疗后的长期健康结局：4年随访。Nat. Commun. 2025, 16, 7786. [Google Scholar] [CrossRef]

Nature Communications
IF15.7
2025-08-280
OAAI
Brooke C. Wilson; Michele Zuppi; José G. B. Derraik; Benjamin B. Albert; Ry Y. Tweedie-Cullen; Karen S. W. Leong; Kathryn L. Beck; Tommi Vatanen; Justin M. O’Sullivan; Wayne S. Cutfield
Associations between dietary fibers and gut microbiome composition in the EDIA longitudinal infant cohort
AMERICAN JOURNAL OF CLINICAL NUTRITION
IF6.9
2025-01-010
OAAI
Lalli, Marianne K.; Salo, Tuuli E., I; Hakola, Leena; Knip, Mikael; Virtanen, Suvi M.; Vatanen, Tommi
Advancing microbiome research in Māori populations: insights from recent literature exploring the gut microbiomes of underrepresented and Indigenous peoples

推进毛利人群体的微生物组研究: 来自最近文献的见解，探索代表性不足和土著人民的肠道微生物组

MSYSTEMS
IF4.6
2024-11-191
OAAI
Silk, Ella T.; Bayer, Simone B.; Foster, Meika; Roy, Nicole C.; Taylor, Michael W.; Vatanen, Tommi; Gearry, Richard B.
Fecal microbiota transplantation alters gut phage communities in a clinical trial for obesity
MICROBIOME
IF12.7
2024-07-063
OAAI
Zuppi, Michele; Vatanen, Tommi; Wilson, Brooke C.; Golovina, Evgeniia; Portlock, Theo; Cutfield, Wayne S.; Vickers, Mark H.; O'Sullivan, Justin M.
Gut microbiome shifts in people with type 1 diabetes are associated with glycaemic control: an INNODIA study

1型糖尿病患者肠道菌群变化与血糖控制相关: INNODIA研究

DIABETOLOGIA
IF10.2
2024-06-042
OAAI
Vatanen, Tommi; de Beaufort, Carine; Marcovecchio, M. Loredana; Overbergh, Lut; Brunak, Soren; Peakman, Mark; Mathieu, Chantal; Knip, Mikael
Horizontal gene transfer after faecal microbiota transplantation in adolescents with obesity

肥胖青少年粪便菌群移植后的水平基因转移

MICROBIOME
IF12.7
2024-02-121
OAAI
Behling, Anna H.; Wilson, Brooke C.; Ho, Daniel; Cutfield, Wayne S.; Vatanen, Tommi; O'Sullivan, Justin M.
Addressing antibiotic resistance: computational answers to a biological problem?
CURRENT OPINION IN MICROBIOLOGY
IF7.5
2023-08-016
OAAI
Behling, Anna H.; Wilson, Brooke C.; Ho, Daniel; Virta, Marko; O'Sullivan, Justin M.; Vatanen, Tommi
Impact of exposure to per- and polyfluoroalkyl substances on fecal microbiota composition in mother-infant dyads

暴露于per和多氟烷基物质对母婴二人粪便微生物群组成的影响

ENVIRONMENT INTERNATIONAL
IF9.7
2023-06-0113
OAAI
Lamichhane, Santosh; Harkonen, Taina; Vatanen, Tommi; Hyotylainen, Tuulia; Knip, Mikael; Oresic, Matej
Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method

使用基于深度学习的方法对宏基因组和微生物基因组进行全面的功能注释

MSYSTEMS
IF4.6
2023-04-2714
OAAI
Maranga, Mary; Szczerbiak, Pawel; Bezshapkin, Valentyn; Gligorijevic, Vladimir; Chandler, Chris; Bonneau, Richard; Xavier, Ramnik J.; Vatanen, Tommi; Kosciolek, Tomasz
Sequence-structure-function relationships in the microbial protein universe
NATURE COMMUNICATIONS
IF15.7
2023-04-2623
OAAI
Leman, Julia Koehler; Szczerbiak, Pawel; Renfrew, P. Douglas; Gligorijevic, Vladimir; Berenberg, Daniel; Vatanen, Tommi; Taylor, Bryn C.; Chandler, Chris; Janssen, Stefan; Pataki, Andras; Carriero, Nick; Fisk, Ian; Xavier, Ramnik J.; Knight, Rob; Bonneau, Richard; Kosciolek, Tomasz
Finnish children carrying the high-risk HLA genotype have a 45-fold increased risk of type 1 diabetes compared to peers with neutral or protective genotypes

与具有中性或保护性基因型的同龄人相比，携带高风险HLA基因型的芬兰儿童患1型糖尿病的风险增加了45倍。

DIABETES RESEARCH AND CLINICAL PRACTICE
IF7.4
2023-03-012
OAAI
Taka, Antti-Mathias; But, Anna; Lempainen, Johanna; Vatanen, Tommi; Harkonen, Taina; Ilonen, Jorma; Knip, Mikael
The fecal microbiotas of women of Pacific and New Zealand European ethnicities are characterized by distinctive enterotypes that reflect dietary intakes and fecal water content
GUT MICROBES
IF11
2023-02-174
OAAI
Renall, Nikki; Lawley, Blair; Vatanen, Tommi; Merz, Benedikt; Douwes, Jeroen; Corbin, Marine; Te Morenga, Lisa; Kruger, Rozanne; Breier, Bernhard H.; Tannock, Gerald W.
Dysregulation of secondary bile acid metabolism precedes islet autoimmunity and type 1 diabetes
CELL REPORTS MEDICINE
IF10.6
2022-10-0122
OAAI
Lamichhane, Santosh; Sen, Partho; Dickens, Alex M.; Alves, Marina Amaral; Harkonen, Taina; Honkanen, Jarno; Vatanen, Tommi; Xavier, Ramnik J.; Hyotylainen, Tuulia; Knip, Mikael; Oresic, Matej

Research Directions

The data has not been retrieved yet.
J
Justin M. O’Sullivan
H-index:41Papers:268Citations:6,832
B
Brooke C. Wilson
H-index:13Papers:36Citations:1,048
M
Mikael Knip
H-index:122Papers:1,143Citations:5.5万
R
Ramnik J. Xavier
H-index:186Papers:1,004Citations:18.3万
W
Wayne S. Cutfield
H-index:63Papers:422Citations:1.6万
T
Taina Härkönen
H-index:31Papers:119Citations:4,700
J
José G. B. Derraik
H-index:44Papers:326Citations:1.0万
M
Matej Orešič
H-index:106Papers:621Citations:4.6万
J
Jorma Ilonen
H-index:94Papers:848Citations:3.8万
V
Valentina Chiavaroli
H-index:26Papers:86Citations:2,144