Not logged in Cell-free RNA analysis for non-invasive cancer detection and characterization Nesselbush, Monica C.; Luca, Bogdan A.; Jeon, Young-Jun; Jabara, Isabel; Meador, Catherine B.; Binkley, Michael S.; Xu, Nova; Hui, Angela B.; Garofalo, Andrea; Shi, William Y.; Liu, Kevin J.; Sugio, Takeshi; Kastelowitz, Noah; Hamilton, Emily G.; Bonilla, Rene F.; Wang, Yi Peng; Jiang, Alice; Lau, Brianna; Eichholz, Jordan; Banwait, Mandeep; Schroers-Martin, Joseph; Boegeholz, Jan; King, Daniel A.; Esfahani, Mohammad S.; Raclin, Tyler; Tibshirani, Robert; Srinivas, Sandy; Nair, Viswam S.; Isbell, James M.; Li, Bob T.; Piotrowska, Zofia; Sequist, Lecia V.; Hata, Aaron N.; Neal, Joel W.; Wakelee, Heather A.; Gentles, Andrew J.; Alizadeh, Ash A.; Diehn, Maximilian Share Save
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RePhyNER: Overcoming limitations of access to matched germline for serial liquid biopsy applications Esfahani, Mohammad Shahrokh; Alig, Stefan; Hamilton, Emily; Schroers-Martin, Joseph; Sworder, Brian; Boegeholz, Jan; Olsen, Mari; Liu, Chih Long; Kurtz, David; Diehn, Maximilian; Alizadeh, Ash Share Save
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Inferring gene expression from cell-free DNA fragmentation profiles Esfahani, Mohammad Shahrokh; Hamilton, Emily G.; Mehrmohamadi, Mahya; Nabet, Barzin Y.; Alig, Stefan K.; King, Daniel A.; Steen, Chloe B.; Macaulay, Charles W.; Schultz, Andre; Nesselbush, Monica C.; Soo, Joanne; Schroers-Martin, Joseph G.; Chen, Binbin; Binkley, Michael S.; Stehr, Henning; Chabon, Jacob J.; Sworder, Brian J.; Hui, Angela B-Y; Frank, Matthew J.; Moding, Everett J.; Liu, Chih Long; Newman, Aaron M.; Isbell, James M.; Rudin, Charles M.; Li, Bob T.; Kurtz, David M.; Diehn, Maximilian; Alizadeh, Ash A. Share Save
A Comprehensive Circulating Tumor DNA Assay for Detection of Translocation and Copy-Number Changes in Pediatric Sarcomas Shah, Avanthi Tayi; Azad, Tej D.; Breese, Marcus R.; Chabon, Jacob J.; Hamilton, Emily G.; Straessler, Krystal; Kurtz, David M.; Leung, Stanley G.; Spillinger, Aviv; Liu, Heng-Yi; Behroozfard, Inge H.; Wittber, Frederick M.; Hazard, Florette K.; Cho, Soo-Jin; Daldrup-Link, Heike E.; Vo, Kieuhoa T.; Rangaswami, Arun; Pribnow, Allison; Spunt, Sheri L.; Lacayo, Norman J.; Diehn, Maximilian; Alizadeh, Ash A.; Sweet-Cordero, E. Alejandro Share Save
Enhanced detection of minimal residual disease by targeted sequencing of phased variants in circulating tumor DNA Kurtz, David M.; Soo, Joanne; Keh, Lyron Co Ting; Alig, Stefan; Chabon, Jacob J.; Sworder, Brian J.; Schultz, Andre; Jin, Michael C.; Scherer, Florian; Garofalo, Andrea; Macaulay, Charles W.; Hamilton, Emily G.; Chen, Binbin; Olsen, Mari; Schroers-Martin, Joseph G.; Craig, Alexander F. M.; Moding, Everett J.; Esfahani, Mohammad S.; Liu, Chih Long; Duehrsen, Ulrich; Huettmann, Andreas; Casasnovas, Rene-Olivier; Westin, Jason R.; Roschewski, Mark; Wilson, Wyndham H.; Gaidano, Gianluca; Rossi, Davide; Diehn, Maximilian; Alizadeh, Ash A. Share Save
Human placental cytotrophoblast epigenome dynamics over gestation and alterations in placental disease Zhang, Bo; Kim, M. Yvonne; Elliot, GiNell; Zhou, Yan; Zhao, Guangfeng; Li, Daofeng; Lowdon, Rebecca F.; Gormley, Matthew; Kapidzic, Mirhan; Robinson, Joshua F.; McMaster, Michael T.; Hong, Chibo; Mazor, Tali; Hamilton, Emily; Sears, Renee L.; Pehrsson, Erica C.; Marra, Marco A.; Jones, Steven J. M.; Bilenky, Misha; Hirst, Martin; Wang, Ting; Costello, Joseph F.; Fisher, Susan J. Share Save
KEAP1/NFE2L2 Mutations Predict Lung Cancer Radiation Resistance That Can Be Targeted by Glutaminase Inhibition Binkley, Michael S.; Jeon, Young-Jun; Nesselbush, Monica; Moding, Everett J.; Nabet, Barzin Y.; Almanza, Diego; Kunder, Christian; Stehr, Henning; Yoo, Christopher H.; Rhee, Siyeon; Xiang, Michael; Chabon, Jacob J.; Hamilton, Emily; Kurtz, David M.; Gojenola, Linda; Owen, Susie Grant; Ko, Ryan B.; Shin, June Ho; Maxim, Peter G.; Lui, Natalie S.; Backhus, Leah M.; Berry, Mark F.; Shrager, Joseph B.; Ramchandran, Kavitha J.; Padda, Sukhmani K.; Das, Millie; Neal, Joel W.; Wakelee, Heather A.; Alizadeh, Ash A.; Loo, Billy W.; Diehn, Maximilian Share Save
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Chromatin accessibility patterns in cell-free DNA reveal tumor heterogeneity Esfahani, Mohammad Shahrokh; Mehrmohamadi, Mahya; Steen, Chloe B.; Hamilton, Emily G.; King, Daniel A.; Soo, Joanne; Macaulay, Charles; Jin, Michael; Kurtz, David M.; Nabet, Barzin; Moding, Everett; Chabon, Jacob; Newman, Aaron; Diehn, Maximilian; Alizadeh, Ash A. Share Save
A noninvasive approach for early prediction of therapeutic benefit from immune checkpoint inhibition for lung cancer Nabet, Barzin Y.; Esfahani, Mohammad S.; Hamilton, Emily G.; Chabon, Jacob J.; Moding, Everett J.; Rizvi, Hira; Steen, Chloe B.; Chaudhuri, Aadel A.; Liu, Chih Long; Hui, Angela B.; Stehr, Henning; Goljenola, Linda; Jin, Michael C.; Jeon, Young-Jun; Tseng, Diane; Merghoub, Taha; Neal, Joel W.; Wakelee, Heather A.; Padda, Sukhmani K.; Ramchandran, Kavitha J.; Das, Millie; Bonilla, Rene F.; Yoo, Christopher; Chen, Emily L.; Ko, Ryan B.; Newman, Aaron M.; Hellmann, Matthew D.; Alizadeh, Ash A.; Diehn, Maximilian Share Save
Circulating Tumor DNA Analysis for Detection of Minimal Residual Disease After Chemoradiotherapy for Localized Esophageal Cancer Azad, Tej D.; Chaudhuri, Aadel A.; Fang, Penny; Qiao, Yawei; Esfahani, Mohammad S.; Chabon, Jacob J.; Hamilton, Emily G.; Yang, Yi D.; Lovejoy, Alex; Newman, Aaron M.; Kurtz, David M.; Jin, Michael; Schroers-Martin, Joseph; Stehr, Henning; Liu, Chih Long; Hui, Angela Bik-Yu; Patel, Viren; Maru, Dipen; Lin, Steven H.; Alizadeh, Ash A.; Diehn, Maximilian Share Save
Genomic Profiling of BDE-47 Effects on Human Placental Cytotrophoblasts Robinson, Joshua F.; Kapidzic, Mirhan; Hamilton, Emily G.; Chen, Hao; Puckett, Kenisha W.; Zhou, Yan; Ona, Katherine; Parry, Emily; Wang, Yunzhu; Park, June-Soo; Costello, Joseph F.; Fisher, Susan J. Share Save
Convergence of placenta biology and genetic risk for schizophrenia Ursini, Gianluca; Punzi, Giovanna; Chen, Qiang; Marenco, Stefano; Robinson, Joshua F.; Porcelli, Annamaria; Hamilton, Emily G.; Mitjans, Marina; Maddalena, Giancarlo; Begemann, Martin; Seidel, Jan; Yanamori, Hidenaga; Jaffe, Andrew E.; Berman, Karen F.; Egan, Michael F.; Straub, Richard E.; Colantuoni, Carlo; Blasi, Giuseppe; Hashimoto, Ryota; Rujescu, Dan; Ehrenreich, Hannelore; Bertolino, Alessandro; Weinberger, Daniel R. Share Save
PLACENTAL GENE EXPRESSION, OBSTETRICAL HISTORY AND POLYGENIC RISK FOR SCHIZOPHRENIA Ursini, Gianluca; Punzi, Giovanna; Chen, Qiang; Marenco, Stefano; Robinson, Joshua F.; Porcelli, Annamaria; Hamilton, Emily; Mitjans, Marina; Maddalena, Giancarlo; Begemann, Martin; Seidel, Jan; Yanamori, Hidenaga; Jaffe, Andrew E.; Berman, Karen F.; Egan, Michael F.; Straub, Richard; Colantuoni, Carlo; Blasi, Giuseppe; Hashimoto, Ryota; Rujescu, Dan; Ehrenreich, Hannelore; Bertolino, Alessandro; Weinberger, Daniel Share Save
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An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues Corces, M. Ryan; Trevino, Alexandro E.; Hamilton, Emily G.; Greenside, Peyton G.; Sinnott-Armstrong, Nicholas A.; Vesuna, Sam; Satpathy, Ansuman T.; Rubin, Adam J.; Montine, Kathleen S.; Wu, Beijing; Kathiria, Arwa; Cho, Seung Woo; Mumbach, Maxwell R.; Carter, Ava C.; Kasowski, Maya; Orloff, Lisa A.; Risca, Viviana I.; Kundaje, Anshul; Khavari, Paul A.; Montine, Thomas J.; Greenleaf, William J.; Chang, Howard Y. Share Save
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