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Casey S. Greene

alex's lemonade stand foundation

61H-index
593Paper Count
2.0WCitation Count
Published Papers 119
Publication Date
The Single-Cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors
err2026-06-24
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errAllegra G. Hawkins; Joshua A. Shapiro; Stephanie J. Spielman; David S. Mejia; Deepashree Venkatesh Prasad; Nozomi Ichihara; Arkadii Yakovets; Avrohom M. Gottlieb; Kurt G. Wheeler; Chante J. Bethell; Steven M. Foltz; Jennifer O’Malley; Casey S. Greene; Jaclyn N. Taroni
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Missing cell types in single-cell references impact deconvolution of bulk data but are detectable
err2025-04-07
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errOAAI
errIvich, Adriana; Davidson, Natalie R.; Grieshober, Laurie; Li, Weishan; Hicks, Stephanie C.; Doherty, Jennifer A.; Greene, Casey S.
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Latent spaces for tumour transcriptomes
err2024-12-17
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PREAI
errIvich, Adriana; Greene, Casey S.
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Best holdout assessment is sufficient for cancer transcriptomic model selection
err2024-12-01
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PREAI
errCrawford, Jake; Chikina, Maria; Greene, Casey S.
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An efficient, not-only-linear correlation coefficient based on clustering
err2024-09-01
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errOAAI
errPividori, Milton; Ritchie, Marylyn D.; Milone, Diego H.; Greene, Casey S.
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Molecular Subtypes of High-Grade Serous Ovarian Cancer across Racial Groups and Gene Expression Platforms
err2024-05-23
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errOAAI
errDavidson, Natalie R.; Barnard, Mollie E.; Hippen, Ariel A.; Campbell, Amy; Johnson, Courtney E.; Way, Gregory P.; Dalley, Brian K.; Berchuck, Andrew; Salas, Lucas A.; Peres, Lauren C.; Marks, Jeffrey R.; Schildkraut, Joellen M.; Greene, Casey S.; Doherty, Jennifer A.
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Pseudomonas aeruginosa transcriptome analysis of metal restriction in ex vivo cystic fibrosis sputum
err2024-04-02
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errOAAI
errNeff, Samuel L.; Doing, Georgia; Reiter, Taylor; Hampton, Thomas H.; Greene, Casey S.; Hogan, Deborah A.
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Characterization of germline and somatic homologous recombination deficiency features in high-grade serous ovarian cancer among Black individuals
err2024-03-22
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PREAI
errLawson-Michod, Katherine; Barnard, Mollie E.; Davidson, Natalie; Collin, Lindsay J.; Johnson, Courtney; Salas, Lucas A.; Greene, Casey; Marks, Jeffrey R.; Peres, Lauren; Schildkraut, Joellen M.; Doherty, Jennifer A.
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The Single-cell Pediatric Cancer Atlas: Open-source data and tools for single-cell transcriptomics of pediatric tumors
err2024-03-22
err0
PREAI
errHawkins, Allegra G.; Shapiro, Joshua A.; Spielman, Stephanie J.; Mejia, David S.; Prasad, Deepashree Venkatesh; Ichihara, Nozomi; Yakovets, Arkadii; Wheeler, Kurt G.; Bethell, Chante J.; Foltz, Steven M.; O'Malley, Jennifer; Greene, Casey S.; Taroni, Jaclyn N.
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The probability of edge existence due to node degree: a baseline for network-based predictions
err2024-02-07
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errOAAI
errZietz, Michael; Himmelstein, Daniel S.; Kloster, Kyle; Williams, Christopher; Nagle, Michael W.; Greene, Casey S.
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A phase I/Ib trial and biological correlate analysis of neoadjuvant SBRT with single-dose durvalumab in HPV-unrelated locally advanced HNSCC (vol 3, pg 1300, 2022)
err2024-01-10
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errDarragh, Laurel B.; Knitz, Michael M.; Hu, Junxiao; Clambey, Eric T.; Backus, Jennifer; Dumit, Andrew; Samedi, Von; Bubak, Andrew; Greene, Casey; Mehrotra, Sanjana; Bhatia, Shilpa; Gadwa, Jacob; Bickett, Thomas; Piper, Miles; Fakhoury, Kareem; Liu, Arthur; Petit, Joshua; Bowles, Daniel; Thaker, Ashesh; Atiyeh, Kimberly; Goddard, Julie; Hoyer, Robert; Van Bokhoven, Adrie; Jordan, Kimberly; Jimeno, Antonio; Raben, David; McDermott, Jessica D.; Karam, Sana D.
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Building a vertically integrated genomic learning health system: The biobank at the Colorado Center for Personalized Medicine
err2024-01-01
err10
errOAAI
errWiley, Laura K.; Shortt, Jonathan A.; Roberts, Emily R.; Lowery, Jan; Kudron, Elizabeth; Lin, Meng; Mayer, David; Wilson, Melissa; Brunetti, Tonya M.; Chavan, Sameer; Phang, Tzu L.; Pozdeyev, Nikita; Lesny, Joseph; Wicks, Stephen J.; Moore, Ethan T.; Morgenstern, Joshua L.; Roff, Alanna N.; Shalowitz, Elise L.; Stewart, Adrian; Williams, Cole; Edelmann, Michelle N.; Hull, Madelyne; Patton, J. Tacker; Axell, Lisen; Ku, Lisa; Lee, Yee Ming; Jirikowic, Jean; Tanaka, Anna; Todd, Emily; White, Sarah; Peterson, Brett; Hearst, Emily; Zane, Richard; Greene, Casey S.; Mathias, Rasika; Coors, Marilyn; Taylor, Matthew; Ghosh, Debashis; Kahn, Michael G.; Brooks, Ian M.; Aquilante, Christina L.; Kao, David; Rafaels, Nicholas; Crooks, Kristy R.; Hess, Steve; Barnes, Kathleen C.; Gignoux, Christopher R.
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Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors
err2023-10-20
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errOAAI
errHippen, Ariel A.; Omran, Dalia K.; Weber, Lukas M.; Jung, Euihye; Drapkin, Ronny; Doherty, Jennifer A.; Hicks, Stephanie C.; Greene, Casey S.
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Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms
err2023-09-09
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errOAAI
errPividori, Milton; Lu, Sumei; Li, Binglan; Su, Chun; Johnson, Matthew E.; Wei, Wei-Qi; Feng, Qiping; Namjou, Bahram; Kiryluk, Krzysztof; Kullo, Iftikhar J.; Luo, Yuan; Sullivan, Blair D.; Voight, Benjamin F.; Skarke, Carsten; Ritchie, Marylyn D.; Grant, Struan F. A.; Greene, Casey S.
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Hetnet connectivity search provides rapid insights into how biomedical entities are related
err2023-07-28
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errHimmelstein, Daniel S.; Zietz, Michael; Rubinetti, Vincent; Kloster, Kyle; Heil, Benjamin J.; Alquaddoomi, Faisal; Hu, Dongbo; Nicholson, David N.; Hao, Yun; Sullivan, Blair D.; Nagle, Michael W.; Greene, Casey S.
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OpenPBTA: The Open Pediatric Brain Tumor Atlas
err2023-07-01
err9
errOAAI
errShapiro, Joshua A.; Gaonkar, Krutika S.; Spielman, Stephanie J.; Savonen, Candace L.; Bethell, Chante J.; Jin, Run; Rathi, Komal S.; Zhu, Yuankun; Egolf, Laura E.; Farrow, Bailey K.; Miller, Daniel P.; Yang, Yang; Koganti, Tejaswi; Noureen, Nighat; Koptyra, Mateusz P.; Duong, Nhat; Santi, Mariarita; Kim, Jung; Robins, Shannon; Storm, Phillip B.; Mack, Stephen C.; Lilly, Jena, V; Xie, Hongbo M.; Jain, Payal; Raman, Pichai; Rood, Brian R.; Lulla, Rishi R.; Nazarian, Javad; Kraya, Adam A.; Vaksman, Zalman; Heath, Allison P.; Kline, Cassie; Scolaro, Laura; Viaene, Angela N.; Huang, Xiaoyan; Way, Gregory P.; Foltz, Steven M.; Zhang, Bo; Poetsch, Anna R.; Mueller, Sabine; Ennis, Brian M.; Prados, Michael; Diskin, Sharon J.; Zheng, Siyuan; Guo, Yiran; Kannan, Shrivats; Waanders, Angela J.; Margol, Ashley S.; Kim, Meen Chul; Hanson, Derek; Van Kuren, Nicholas; Wong, Jessica; Kaufman, Rebecca S.; Coleman, Noel; Blackden, Christopher; Cole, Kristina A.; Mason, Jennifer L.; Madsen, Peter J.; Koschmann, Carl J.; Stewart, Douglas R.; Wafula, Eric; Brown, Miguel A.; Resnick, Adam C.; Greene, Casey S.; Rokita, Jo Lynne; Taroni, Jaclyn N.
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Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality (vol 34, 108917, 2021)
err2023-06-01
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errOAAI
errDang, Mai T.; Gonzalez, Michael V.; Gaonkar, Krutika S.; Rathi, Komal S.; Young, Patricia; Arif, Sherjeel; Zhai, Li; Alam, Zahidul; Devalaraja, Samir; To, Tsun Ki Jerrick; Folkert, Ian W.; Raman, Pichai; Rokita, Jo Lynne; Martinez, Daniel; Taroni, Jaclyn N.; Shapiro, Joshua A.; Greene, Casey S.; Savonen, Candace; Mafra, Fernanda; Hakonarson, Hakon; Curran, Tom; Haldar, Malay
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Machine learning in rare disease
err2023-05-29
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PREAI
errBanerjee, Jineta; Taroni, Jaclyn N.; Allaway, Robert J.; Prasad, Deepashree Venkatesh; Guinney, Justin; Greene, Casey
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