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Paul A. Clemons

Broad Institute of Harvard and MIT

58H-index
223Paper Count
3.3WCitation Count
Published Papers 90
Publication Date
Author Correction: Diversity-oriented synthesis yields novel multistage antimalarial inhibitors
errNature
IF48.5
err2025-11-28
err0
PREAI
errNobutaka Kato; Eamon Comer; Tomoyo Sakata-Kato; Arvind Sharma; Manmohan Sharma; Micah Maetani; Jessica Bastien; Nicolas M. Brancucci; Joshua A. Bittker; Victoria Corey; David Clarke; Emily R. Derbyshire; Gillian L. Dornan; Sandra Duffy; Sean Eckley; Maurice A. Itoe; Karin M. J. Koolen; Timothy A. Lewis; Ping S. Lui; Amanda K. Lukens; Emily Lund; Sandra March; Elamaran Meibalan; Bennett C. Meier; Jacob A. McPhail; Branko Mitasev; Eli L. Moss; Morgane Sayes; Yvonne Van Gessel; Mathias J. Wawer; Takashi Yoshinaga; Anne-Marie Zeeman; Vicky M. Avery; Sangeeta N. Bhatia; John E. Burke; Flaminia Catteruccia; Jon C. Clardy; Paul A. Clemons; Koen J. Dechering; Jeremy R. Duvall; Michael A. Foley; Fabian Gusovsky; Clemens H. M. Kocken; Matthias Marti; Marshall L. Morningstar; Benito Munoz; Daniel E. Neafsey; Amit Sharma; Elizabeth A. Winzeler; Dyann F. Wirth; Christina A. Scherer; Stuart L. Schreiber
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Diversity-oriented synthesis encoded by deoxyoligonucleotides (vol 14, 4930, 2023)
err2023-11-21
err0
errOAAI
errHudson, Liam; Mason, Jeremy W.; Westphal, Matthias V.; Richter, Matthieu J. R.; Thielman, Jonathan R.; Hua, Bruce K.; Gerry, Christopher J.; Xia, Guoqin; Osswald, Heather L.; Knapp, John M.; Tan, Zher Yin; Kokkonda, Praveen; Tresco, Ben I. C.; Liu, Shuang; Reidenbach, Andrew G.; Lim, Katherine S.; Poirier, Jennifer; Capece, John; Bonazzi, Simone; Gampe, Christian M.; Smith, Nichola J.; Bradner, James E.; Coley, Connor W.; Clemons, Paul A.; Melillo, Bruno; Hon, C. Suk-Yee; Ottl, Johannes; Dumelin, Christoph E.; Schaefer, Jonas V.; Faust, Ann Marie E.; Berst, Frederic; Schreiber, Stuart L.; Zecri, Frederic J.; Briner, Karin
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DNA-encoded library-enabled discovery of proximity-inducing small molecules
err2023-11-02
err15
errOAAI
errMason, Jeremy W.; Chow, Yuen Ting; Hudson, Liam; Tutter, Antonin; Michaud, Gregory; Westphal, Matthias V.; Shu, Wei; Ma, Xiaolei; Tan, Zher Yin; Coley, Connor W.; Clemons, Paul A.; Bonazzi, Simone; Berst, Frederic; Briner, Karin; Liu, Shuang; Zecri, Frederic J.; Schreiber, Stuart L.
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Diversity-oriented synthesis encoded by deoxyoligonucleotides
err2023-08-15
err7
errOAAI
errHudson, Liam; Mason, Jeremy W.; Westphal, Matthias V.; Richter, Matthieu J. R.; Thielman, Jonathan R.; Hua, Bruce K.; Gerry, Christopher J.; Xia, Guoqin; Osswald, Heather L.; Knapp, John M.; Tan, Zher Yin; Kokkonda, Praveen; Tresco, Ben I. C.; Liu, Shuang; Reidenbach, Andrew G.; Lim, Katherine S.; Poirier, Jennifer; Capece, John; Bonazzi, Simone; Gampe, Christian M.; Smith, Nichola J.; Bradner, James E.; Coley, Connor W.; Clemons, Paul A.; Melillo, Bruno; Hon, C. Suk-Yee; Ottl, Johannes; Dumelin, Christoph E.; Schaefer, Jonas V.; Faust, Ann Marie E.; Berst, Frederic; Schreiber, Stuart L.; Zecri, Frederic J.; Briner, Karin
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Predicting compound activity from phenotypic profiles and chemical structures
err2023-04-08
err26
errOAAI
errMoshkov, Nikita; Becker, Tim; Yang, Kevin; Horvath, Peter; Dancik, Vlado; Wagner, Bridget K.; Clemons, Paul A.; Singh, Shantanu; Carpenter, Anne E.; Caicedo, Juan C.
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Mapping the landscape of genetic dependencies in chordoma
err2023-04-06
err14
errOAAI
errSharifnia, Tanaz; Wawer, Mathias J.; Goodale, Amy; Lee, Yenarae; Kazachkova, Mariya; Dempster, Joshua M.; Muller, Sandrine; Levy, Joan; Freed, Daniel M.; Sommer, Josh; Kalfon, Jeremie; Vazquez, Francisca; Hahn, William C.; Root, David E.; Clemons, Paul A.; Schreiber, Stuart L.
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Reference compounds for characterizing cellular injury in high-content cellular morphology assays
err2023-03-13
err10
errOAAI
errDahlin, Jayme L.; Hua, Bruce K.; Zucconi, Beth E.; Nelson, Shawn D.; Singh, Shantanu; Carpenter, Anne E.; Shrimp, Jonathan H.; Lima-Fernandes, Evelyne; Wawer, Mathias J.; Chung, Lawrence P. W.; Agrawal, Ayushi; O'Reilly, Mary; Barsyte-Lovejoy, Dalia; Szewczyk, Magdalena; Li, Fengling; Lak, Parnian; Cuellar, Matthew; Cole, Philip A.; Meier, Jordan L.; Thomas, Tim; Baell, Jonathan B.; Brown, Peter J.; Walters, Michael A.; Clemons, Paul A.; Schreiber, Stuart L.; Wagner, Bridget K.
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A general approach to identify cell-permeable and synthetic anti-CRISPR small molecules
err2022-11-17
err5
errOAAI
errLim, Donghyun; Zhou, Qingxuan; Cox, Kurt J.; Law, Benjamin K.; Lee, Miseon; Kokkonda, Praveen; Sreekanth, Vedagopuram; Pergu, Rajaiah; Chaudhary, Santosh K.; Gangopadhyay, Soumyashree A.; Maji, Basudeb; Lai, Sophia; Amako, Yuka; Thompson, David B.; Subramanian, Hari K. K.; Mesleh, Michael F.; Dandik, Vlado; Clemons, Paul A.; Wagner, Bridget K.; Woo, Christina M.; Church, George M.; Choudhary, Amit
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Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
err2022-06-06
err40
errOAAI
errUnni, Deepak R.; Moxon, Sierra A. T.; Bada, Michael; Brush, Matthew; Bruskiewich, Richard; Caufield, J. Harry; Clemons, Paul A.; Dancik, Vlado; Dumontier, Michel; Fecho, Karamarie; Glusman, Gustavo; Hadlock, Jennifer J.; Harris, Nomi L.; Joshi, Arpita; Putman, Tim; Qin, Guangrong; Ramsey, Stephen A.; Shefchek, Kent A.; Solbrig, Harold; Soman, Karthik; Thessen, Anne E.; Haendel, Melissa A.; Bizon, Chris; Mungall, Christopher J.
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Machine Learning on DNA-Encoded Library Count Data Using an Uncertainty-Aware Probabilistic Loss Function
err2022-05-10
err28
errOAAI
errLim, Katherine S.; Reidenbach, Andrew G.; Hua, Bruce K.; Mason, Jeremy W.; Gerry, Christopher J.; Clemons, Paul A.; Coley, Connor W.
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Phenotypic Screening for Small Molecules that Protect ?-Cells from Glucolipotoxicity
err2022-04-19
err4
errOAAI
errSmall, Jonnell C.; Joblin-Mills, Aidan; Carbone, Kaycee; Kost-Alimova, Maria; Ayukawa, Kumiko; Khodier, Carol; Dancik, Vlado; Clemons, Paul A.; Munkacsi, Andrew B.; Wagner, Bridget K.
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Targeted brachyury degradation disrupts a highly specific autoregulatory program controlling chordoma cell identity
err2021-01-01
err21
errOAAI
errSheppard, Hadley E.; Dall'Agnese, Alessandra; Park, Woojun D.; Shamim, M. Hamza; Dubrulle, Julien; Johnson, Hannah L.; Stossi, Fabio; Cogswell, Patricia; Sommer, Josh; Levy, Joan; Sharifnia, Tanaz; Wawer, Mathias J.; Nabet, Behnam; Gray, Nathanael S.; Clemons, Paul A.; Schreiber, Stuart L.; Workman, Paul; Young, Richard A.; Lin, Charles Y.
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Selective covalent targeting of GPX4 using masked nitrile-oxide electrophiles
err2020-03-30
err303
errOAAI
errEaton, John K.; Furst, Laura; Ruberto, Richard A.; Moosmayer, Dieter; Hilpmann, Andre; Ryan, Matthew J.; Zimmermann, Katja; Cai, Luke L.; Niehues, Michael; Badock, Volker; Kramm, Anneke; Chen, Sixun; Hillig, Roman C.; Clemons, Paul A.; Gradl, Stefan; Montagnon, Claire; Lazarski, Kiel E.; Christian, Sven; Bajrami, Besnik; Neuhaus, Roland; Eheim, Ashley L.; Viswanathan, Vasanthi S.; Schreiber, Stuart L.
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Small-Molecule and CRISPR Screening Converge to Reveal Receptor Tyrosine Kinase Dependencies in Pediatric Rhabdoid Tumors
err2019-08-01
err31
errOAAI
errOberlick, Elaine M.; Rees, Matthew G.; Seashore-Ludlow, Brinton; Vazquez, Francisca; Nelson, Geoffrey M.; Dharia, Neekesh V.; Weir, Barbara A.; Tsherniak, Aviad; Ghandi, Mahmoud; Krill-Burger, John M.; Meyers, Robin M.; Wang, Xiaofeng; Montgomery, Phil; Root, David E.; Bieber, Jake M.; Radko, Sandi; Cheah, Jaime H.; Hon, C. Suk-Yee; Shamji, Alykhan F.; Clemons, Paul A.; Park, Peter J.; Dyer, Michael A.; Golub, Todd R.; Stegmaier, Kimberly; Hahn, William C.; Stewart, Elizabeth A.; Schreiber, Stuart L.; Roberts, Charles W. M.
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High-resolution specificity profiling and off-target prediction for site-specific DNA recombinases (vol 10, 1937, 2019)
err2019-07-02
err0
errOAAI
errBessen, Jeffrey L.; Afeyan, Lena K.; Dancik, Vlado; Koblan, Luke W.; Thompson, David B.; Leichner, Chas; Clemons, Paul A.; Liu, David R.
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DNA Barcoding a Complete Matrix of Stereoisomeric Small Molecules
err2019-06-11
err81
errOAAI
errGerry, Christopher J.; Wawer, Mathias J.; Clemons, Paul A.; Schreiber, Stuart L.
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Stabilization of the Max Homodimer with a Small Molecule Attenuates Myc-Driven Transcription
err2019-05-01
err111
errOAAI
errStruntz, Nicholas B.; Chen, Andrew; Deutzmann, Anja; Wilson, Robert M.; Stefan, Eric; Evans, Helen L.; Ramirez, Maricela A.; Liang, Tong; Caballero, Francisco; Wildschut, Mattheus H. E.; Neel, Dylan V.; Freeman, David B.; Pop, Marius S.; McConkey, Marie; Muller, Sandrine; Curtin, Brice H.; Tseng, Hanna; Frombach, Kristen R.; Butty, Vincent L.; Levine, Stuart S.; Feau, Clementine; Elmiligy, Sarah; Hong, Jiyoung A.; Lewis, Timothy A.; Vetere, Amedeo; Clemons, Paul A.; Malstrom, Scott E.; Ebert, Benjamin L.; Lin, Charles Y.; Felsher, Dean W.; Koehler, Angela N.
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High-resolution specificity profiling and off-target prediction for site-specific DNA recombinases
err2019-04-26
err31
errOAAI
errBessen, Jeffrey L.; Afeyan, Lena K.; Dancik, Vlado; Koblan, Luke W.; Thompson, David B.; Leichner, Chas; Clemons, Paul A.; Liu, David R.
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A GPX4-dependent cancer cell state underlies the clear-cell morphology and confers sensitivity to ferroptosis
err2019-04-08
err643
errOAAI
errZou, Yilong; Palte, Michael J.; Deik, Amy A.; Li, Haoxin; Eaton, John K.; Wang, Wenyu; Tseng, Yuen-Yi; Deasy, Rebecca; Kost-Alimova, Maria; Dancik, Vlado; Leshchiner, Elizaveta S.; Viswanathan, Vasanthi S.; Signoretti, Sabina; Choueiri, Toni K.; Boehm, Jesse S.; Wagner, Bridget K.; Doench, John G.; Clish, Clary B.; Clemons, Paul A.; Schreiber, Stuart L.
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Renal medullary carcinomas depend upon SMARCB1 loss and are sensitive to proteasome inhibition
err2019-03-12
err37
errOAAI
errHong, Andrew L.; Tseng, Yuen-Yi; Wala, Jeremiah A.; Kim, Won-Jun; Kynnap, Bryan D.; Doshi, Mihir B.; Kugener, Guillaume; Sandoval, Gabriel J.; Howard, Thomas P.; Li, Ji; Yang, Xiaoping; Tillgren, Michelle; Ghandi, Mahmhoud; Sayeed, Abeer; Deasy, Rebecca; Ward, Abigail; McSteen, Brian; Labella, Katherine M.; Keskula, Paula; Tracy, Adam; Connor, Cora; Clinton, Catherine M.; Church, Alanna J.; Crompton, Brian D.; Janeway, Katherine A.; Van Hare, Barbara; Sandak, David; Gjoerup, Ole; Bandopadhayay, Pratiti; Clemons, Paul A.; Schreiber, Stuart L.; Root, David E.; Gokhale, Prafulla C.; Chi, Susan N.; Mullen, Elizabeth A.; Roberts, Charles W. M.; Kadoch, Cigall; Beroukhim, Rameen; Ligon, Keith L.; Boehm, Jesse S.; Hahn, William C.
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