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J

John C. Marioni

Guangzhou Laboratory

103H-index
394Paper Count
5.6WCitation Count
Published Papers 147
Publication Date
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Constructing the spatiotemporal atlas of single-cell lineage trajectories in stereotypic biological structures
errISCIENCE
IF4.1
err2026-01-16
err0
PREAI
errWang, Ran; Yang, Xianfa; Lian, Chengfei; Wang, Jianjie; Chen, Jiehui; Qian, Yun; Xu, Yaochen; Wang, Liantang; Marioni, John C.; Tam, Patrick P. L.; Jing, Naihe
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errSave
Spatiotemporal cellular map of the developing human reproductive tract
errNature
IF48.5
err2025-12-17
err0
errOAAI
errValentina Lorenzi; Cecilia Icoresi-Mazzeo; Charlotte Cassie; Nadav Yayon; Elias R. Ruiz-Morales; Carmen Sancho-Serra; Ryan Colligan; Frederick C. K. Wong; Magda Marečková; Elizabeth Tuck; Kenny Roberts; Tong Li; Marc-Antoine Jacques; James Ashcroft; Xiaoling He; Berta Crespo; Batuhan Cakir; Simon Murray; Yong Gu; Alexander V. Predeus; Martin Prete; Iva Kelava; Roger Barker; Luz Garcia-Alonso; John C. Marioni; Roser Vento-Tormo
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errSave
Photoinactivation of leishmania amazonensis by Soranjidiol and white LED: Unraveling photodynamic and cell death mechanisms
errBioorganic Chemistry
IF4.7
err2025-09-13
err0
PREAI
errJ.A. Dimmer; J. Marioni; C.N. Barrionuevo; D.A. Velázquez López; M.S. Lo Presti; H.W. Rivarola; S.C. Núñez Montoya
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errSave
A spatiotemporal atlas of mouse gastrulation and early organogenesis to explore axial patterning and project in vitro models onto in vivo space
errCell Reports
IF6.9
err2025-07-28
err0
errOAAI
errLuke T.G. Harland; Tim Lohoff; Noushin Koulena; Nico Pierson; Constantin Pape; Farhan Ameen; Jonathan Griffiths; Bart Theeuwes; Nicola K. Wilson; Anna Kreshuk; Wolf Reik; Jennifer Nichols; Long Cai; John C. Marioni; Berthold Göttgens; Shila Ghazanfar
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A single-cell and tissue-scale analysis suite resolves Mixl1's role in heart development
errISCIENCE
IF4.1
err2025-05-01
err0
errOAAI
errLimb, Intermediate; Strauss, Magdalena E.; Ton, Mai-Linh Nu; Mason, Samantha; Bagri, Jaana; Harland, Luke T. G.; Imaz-Rosshandler, Ivan; Wilson, Nicola K.; Nichols, Jennifer; Tyser, Richard C. V.; Marioni, John C.; Guibentif, Carolina
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Early human lung immune cell development and its role in epithelial cell fate
errEUROPEAN RESPIRATORY JOURNAL
IF21
err2024-10-30
err0
errOAAI
errBarnes, Josephine; Yoshida, Masahiro; He, Peng; Worlock, Kaylee; Lindeboom, Rik; Suo, Chenqu; Pett, J. Patrick; Wilbrey-Clark, Anna; Dann, Emma; Mamanova, Lira; Richardson, Laura; Polanski, Krzysztof; Pennycuick, Adam; Allen-Hytinnen, Jessica; Herczeg, Ivan; Arzili, Romina; Hynds, Robert; Teixeira, Vitor; Haniffa, Muzlifah; Lim, Kyungtae; Sun, Dawei; Rawlins, Emma; Oliver, Amanda; Lyons, Paul; Marioni, John; Ruhrberg, Christiana; Tuong, Zewen; Clatworthy, Menna; Reading, James; Janes, Sam; Teichmann, Sarah; Meyer, Kerstin; Nikolic, Marko
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errSave
Base editing screens define the genetic landscape of cancer drug resistance mechanisms
errNATURE GENETICS
IF31.8
err2024-10-18
err1
errOAAI
errCoelho, Matthew A.; Strauss, Magdalena E.; Watterson, Alex; Cooper, Sarah; Bhosle, Shriram; Illuzzi, Giuditta; Karakoc, Emre; Dincer, Cansu; Vieira, Sara F.; Sharma, Mamta; Moullet, Marie; Conticelli, Daniela; Koeppel, Jonas; Mccarten, Katrina; Cattaneo, Chiara M.; Veninga, Vivien; Picco, Gabriele; Parts, Leopold; Forment, Josep V.; Voest, Emile E.; Marioni, John C.; Bassett, Andrew; Garnett, Mathew J.
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errSave
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
errNATURE COMMUNICATIONS
IF15.7
err2024-09-01
err1
errOAAI
errNadalin, F.; Marzi, M. J.; Piscazzi, M. Pirra; Fuentes-Bravo, P.; Procaccia, S.; Climent, M.; Bonetti, P.; Rubolino, C.; Giuliani, B.; Papatheodorou, I.; Marioni, J. C.; Nicassio, F.
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errSave
Leveraging neighborhood representations of single-cell data to achieve sensitive DE testing with miloDE
errGENOME BIOLOGY
IF9.4
err2024-07-18
err1
errOAAI
errMissarova, Alsu; Dann, Emma; Rosen, Leah; Satija, Rahul; Marioni, John
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errSave
EmptyDropsMultiome discriminates real cells from background in single-cell multiomics assays
errGENOME BIOLOGY
IF9.4
err2024-05-13
err1
errOAAI
errMegas, Stathis; Lorenzi, Valentina; Marioni, John C.
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errSave
The Virtual Child
errCANCER DISCOVERY
IF33.3
err2024-04-04
err1
errOAAI
errGilbertson, Richard J.; Behjati, Sam; Boettcher, Anna-Lisa; Bronner, Marianne E.; Burridge, Matthew; Clausing, Henrick; Clifford, Harry; Danaher, Tracey; Donovan, Laura K.; Drost, Jarno; Eggermont, Alexander M. M.; Emerson, Chris; Flores, Mona G.; Hamerlik, Petra; Jabado, Nada; Jones, Andrew; Kaessmann, Henrick; Kleinman, Claudia L.; Kool, Marcel; Kutscher, Lena M.; Lindberg, Gavin; Linnane, Emily; Marioni, John C.; Maris, John M.; Monje, Michelle; Macaskill, Alexandra; Niederer, Steven; Northcott, Paul A.; Peeters, Elizabeth; Plieger-van Solkema, Willemijn; Preussner, Liane; Rios, Anne C.; Rippe, Karsten; Sandford, Peter; Sgourakis, Nikolaos G.; Shlien, Adam; Smith, Pete; Straathof, Karin; Sullivan, Patrick J.; Suva, Mario L.; Taylor, Michael D.; Thompson, Emma; Vento-Tormo, Roser; Wainwright, Brandon J.; Wechsler-Reya, Robert J.; Westermann, Frank; Winslade, Shannon; Al-Lazikani, Bissan; Pfister, Stefan M.
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errSave
The dynamic genetic determinants of increased transcriptional divergence in spermatids
errNATURE COMMUNICATIONS
IF15.7
err2024-02-10
err0
errOAAI
errPanten, Jasper; Heinen, Tobias; Ernst, Christina; Eling, Nils; Wagner, Rebecca E.; Satorius, Maja; Marioni, John C.; Stegle, Oliver; Odom, Duncan T.
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errSave
Tracking early mammalian organogenesis - prediction and validation of differentiation trajectories at whole organism scale
errDEVELOPMENT
IF3.6
err2024-01-31
err6
errOAAI
errImaz-Rosshandler, Ivan; Rode, Christina; Guibentif, Carolina; Harland, Luke T. G.; Ton, Mai-Linh N.; Dhapola, Parashar; Keitley, Daniel; Argelaguet, Ricard; Calero-Nieto, Fernando J.; Nichols, Jennifer; Marioni, John C.; de Bruijn, Marella F. T. R.; Gottgens, Berthold
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errSave
scSNV-seq: high-throughput phenotyping of single nucleotide variants by coupled single-cell genotyping and transcriptomics
errGENOME BIOLOGY
IF9.4
err2024-01-15
err5
errOAAI
errCooper, Sarah E.; Coelho, Matthew A.; Strauss, Magdalena E.; Gontarczyk, Aleksander M.; Wu, Qianxin; Garnett, Mathew J.; Marioni, John C.; Bassett, Andrew R.
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errSave
Early human lung immune cell development and its role in epithelial cell fate
errSCIENCE IMMUNOLOGY
IF16.3
err2023-12-22
err14
errOAAI
errBarnes, Josephine L.; Yoshida, Masahiro; He, Peng; Worlock, Kaylee B.; Lindeboom, Rik G. H.; Suo, Chenqu; Pett, J. Patrick; Wilbrey-Clark, Anna; Dann, Emma; Mamanova, Lira; Richardson, Laura; Polanski, Krzysztof; Pennycuick, Adam; Allen-Hyttinen, Jessica; Herczeg, Ivan T.; Arzili, Romina; Hynds, Robert E.; Teixeira, Vitor H.; Haniffa, Muzlifah; Lim, Kyungtae; Sun, Dawei; Rawlins, Emma L.; Oliver, Amanda J.; Lyons, Paul A.; Marioni, John C.; Ruhrberg, Christiana; Tuong, Zewen Kelvin; Clatworthy, Menna R.; Reading, James L.; Janes, Sam M.; Teichmann, Sarah A.; Meyer, Kerstin B.; Nikolic, Marko Z.
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errSave
Cytotoxic T lymphocytes require transcription for infiltration but not target cell lysis
errEMBO REPORTS
IF6.2
err2023-10-20
err0
errOAAI
errRichard, Arianne C.; Ma, Claire Y.; Marioni, John C.; Griffiths, Gillian M.
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errSave
Precise identification of cell states altered in disease using healthy single-cell references
errNATURE GENETICS
IF31.8
err2023-10-12
err9
errOAAI
errDann, Emma; Cujba, Ana-Maria; Oliver, Amanda J.; Meyer, Kerstin B.; Teichmann, Sarah A.; Marioni, John C.
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errSave
A transcriptional and regulatory map of mouse somite maturation
errDEVELOPMENTAL CELL
IF8.7
err2023-10-01
err3
errOAAI
errIbarra-Soria, Ximena; Thierion, Elodie; Mok, Gi Fay; Nsterberg, Andrea E. Mu euro; Odom, Duncan T.; Marioni, John C.
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errSave
Time space and single-cell resolved tissue lineage trajectories and laterality of body plan at gastrulation
errNATURE COMMUNICATIONS
IF15.7
err2023-09-14
err4
errOAAI
errWang, Ran; Yang, Xianfa; Chen, Jiehui; Zhang, Lin; Griffiths, Jonathan A.; Cui, Guizhong; Chen, Yingying; Qian, Yun; Peng, Guangdun; Li, Jinsong; Wang, Liantang; Marioni, John C.; Tam, Patrick P. L.; Jing, Naihe
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errSave
Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender
errNATURE METHODS
IF32.1
err2023-08-07
err111
errOAAI
errFleming, Stephen J.; Chaffin, Mark D.; Arduini, Alessandro; Akkad, Amer-Denis; Banks, Eric; Marioni, John C.; Philippakis, Anthony A.; Ellinor, Patrick T.; Babadi, Mehrtash
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Paul Flicek
H-index: 167 · Papers: 522
D
Don W. Cleveland
H-index: 165 · Papers: 525
C
Carlos Caldas
H-index: 158 · Papers: 1.4K
I
Ian O. Ellis
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