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Hypoxia-induced pulmonary hypertension drives mesenchymal remodeling and reveals a transitional fibroblast state contributing to neomuscularization Sotoodeh, L.; Khadim, A.; Shi, X.; Liu, X.; Li, Q.; Hadzic, S.; Zhou, Y.; Lingampally, A.; Vazquez-Armendariz, A., I; Pak, O.; Crnkovic, S.; Kraut, S.; Yang, W.; Koepke, J.; Samakovlis, C.; Alexopoulus, I; Herold, S.; Seeger, W.; Huang, X.; Weissmann, N.; Chao, C-M; Li, X.; Bellusci, S.; El Agha, E.; Chu, X. Share Save
Unraveling Alveolar Fibroblast and Activated Myofibroblast Heterogeneity and Differentiation Trajectories During Lung Fibrosis Development and Resolution in Young and Old Mice Lingampally, Arun; Truchi, Marin; Shi, Xianrong; Zhou, Yuqing; Vasquez-Pacheco, Esmeralda; Panagiotidis, Georgios-Dimitrios; Hadzic, Stefan; Koepke, Janine; Vazquez-Armendariz, Ana Ivonne; Herold, Susanne; Samakovlis, Christos; Cabrera-Fuentes, Hector A.; Chu, Xuran; Seeger, Werner; Zhang, Jin-San; El Agha, Elie; Mari, Bernard; Bellusci, Saverio; Chen, Chengshui Share Save
Probe set selection for targeted spatial transcriptomics Kuemmerle, Louis B.; Luecken, Malte D.; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Strasser, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor; Schaar, Anna C.; Mahbubani, Krishnaa T.; Sountoulidis, Alexandros; Balassa, Tamas; Kovacs, Ferenc; Horvath, Peter; Piraud, Marie; Erturk, Ali; Samakovlis, Christos; Theis, Fabian J. Share Save
GLI1+Cells Contribute to Vascular Remodeling in Pulmonary Hypertension Chu, Xuran; Kheirollahi, Vahid; Lingampally, Arun; Chelladurai, Prakash; Valasarajan, Chanil; Vazquez-Armendariz, Ana Ivonne; Hadzic, Stefan; Khadim, Ali; Pak, Oleg; Rivetti, Stefano; Wilhelm, Jochen; Bartkuhn, Marek; Crnkovic, Slaven; Moiseenko, Alena; Heiner, Monika; Kraut, Simone; Atefi, Leila Sotoodeh; Koepke, Janine; Valente, Guilherme; Ruppert, Clemens; Braun, Thomas; Samakovlis, Christos; Alexopoulos, Ioannis; Looso, Mario; Chao, Cho-Ming; Herold, Susanne; Seeger, Werner; Kwapiszewska, Grazyna; Huang, Xiaoying; Zhang, Jin-San; Pullamsetti, Soni Savai; Weissmann, Norbert; Li, Xiaokun; El Agha, Elie; Bellusci, Saverio Share Save
Sfrp1 inhibits lung fibroblast invasion during transition to injury-induced myofibroblasts Mayr, Christoph H.; Sengupta, Arunima; Asgharpour, Sara; Ansari, Meshal; Pestoni, Jeanine C.; Ogar, Paulina; Angelidis, Ilias; Liontos, Andreas; Rodriguez-Castillo, Jose Alberto; Lang, Niklas J.; Strunz, Maximilian; Porras-Gonzalez, Diana; Gerckens, Michael; De Sadeleer, Laurens J.; Oehrle, Bettina; Viteri-Alvarez, Valeria; Fernandez, Isis E.; Tallquist, Michelle; Irmler, Martin; Beckers, Johannes; Eickelberg, Oliver; Stoleriu, Gabriel Mircea; Behr, Juergen; Kneidinger, Nikolaus; Wuyts, Wim A.; Wasnick, Roxana Maria; Yildirim, Ali Oender; Ahlbrecht, Katrin; Morty, Rory E.; Samakovlis, Christos; Theis, Fabian J.; Burgstaller, Gerald; Schiller, Herbert B. Share Save
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Yorkie controls tube length and apical barrier integrity during airway development (vol 218, pg 2762, 2019) Skouloudaki, Kassiani; Christodoulou, Ioannis; Khalili, Dilan; Tsarouhas, Vasilios; Samakovlis, Christos; Tomancak, Pavel; Knust, Elisabeth; Papadopoulos, Dimitrios K. Share Save
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Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples Mirzazadeh, Reza; Andrusivova, Zaneta; Larsson, Ludvig; Newton, Phillip T.; Galicia, Leire Alonso; Abalo, Xesus M.; Avijgan, Mahtab; Kvastad, Linda; Denadai-Souza, Alexandre; Stakenborg, Nathalie; Firsova, Alexandra B.; Shamikh, Alia; Jurek, Aleksandra; Schultz, Niklas; Nister, Monica; Samakovlis, Christos; Boeckxstaens, Guy; Lundeberg, Joakim Share Save
A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung Sountoulidis, Alexandros; Marco Salas, Sergio; Braun, Emelie; Avenel, Christophe; Bergenstrahle, Joseph; Theelke, Jonas; Vicari, Marco; Czarnewski, Paulo; Liontos, Andreas; Abalo, Xesus; Andrusivova, Zaneta; Mirzazadeh, Reza; Asp, Michaela; Li, Xiaofei; Hu, Lijuan; Sariyar, Sanem; Martinez Casals, Anna; Ayoglu, Burcu; Firsova, Alexandra; Michaelsson, Jakob; Lundberg, Emma; Waehlby, Carolina; Sundstroem, Erik; Linnarsson, Sten; Lundeberg, Joakim; Nilsson, Mats; Samakovlis, Christos Share Save
GLI1+cells are a source of repair-supportive mesenchymal cells (RSMCs) during airway epithelial regeneration Chu, Xuran; Lingampally, Arun; Moiseenko, Alena; Kheirollahi, Vahid; Vazquez-Armendariz, Ana Ivonne; Koepke, Janine; Khadim, Ali; Kiliaris, Georgios; Felordi, Mahtab Shahriari; Zabihi, Mahsa; Shalashova, Irina; Alexopoulos, Ioannis; Guenther, Stefan; Lebrigand, Kevin; Truchi, Marin; Guenther, Andreas; Braun, Thomas; Mari, Bernard; Samakovlis, Christos; Li, Xiaokun; Seeger, Werner; Herold, Susanne; Zhang, Jin-San; Bellusci, Saverio; El Agha, Elie Share Save
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FGF10 Triggers de novo Alveologenesis in a Bronchopulmonary Dysplasia Model: Impact on Resident Mesenchymal Niche Cells Taghizadeh, Sara; Chao, Cho-Ming; Guenther, Stefan; Glaser, Lea; Gersmann, Luisa; Michel, Gabriela; Kraut, Simone; Goth, Kerstin; Koepke, Janine; Heiner, Monika; Vazquez-Armendariz, Ana Ivonne; Herold, Susanne; Samakovlis, Christos; Weissmann, Norbert; Ricci, Francesca; Aquila, Giorgio; Boyer, Laurent; Ehrhardt, Harald; Minoo, Parviz; Bellusci, Saverio; Rivetti, Stefano Share Save
An essential function for autocrine hedgehog signaling in epithelial proliferation and differentiation in the trachea Yin, Wenguang; Liontos, Andreas; Koepke, Janine; Ghoul, Maroua; Mazzocchi, Luciana; Liu, Xinyuan; Lu, Chunyan; Wu, Haoyu; Fysikopoulos, Athanasios; Sountoulidis, Alexandros; Seeger, Werner; Ruppert, Clemens; Gunther, Andreas; Stainier, Didier Y. R.; Samakovlis, Christos Share Save
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