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SavePopulation-specific reference panel improves imputation quality for genome-wide association studies conducted on the Japanese population
Flanagan, Jack; Liu, Xiaoxi; Ortega-Reyes, David; Tomizuka, Kohei; Matoba, Nana; Akiyama, Masato; Koido, Masaru; Ishigaki, Kazuyoshi; Ashikawa, Kyota; Takata, Sadaaki; Shi, Mingyang; Aoi, Tomomi; Momozawa, Yukihide; Ito, Kaoru; Murakami, Yoshinori; Matsuda, Koichi; Matsuda, Koichi; Yamanashi, Yuji; Furukawa, Yoichi; Morisaki, Takayuki; Murakami, Yoshinori; Kamatani, Yoichiro; Muto, Kaori; Nagai, Akiko; Obara, Wataru; Yamaji, Ken; Takahashi, Kazuhisa; Asai, Satoshi; Takahashi, Yasuo; Suzuki, Takao; Sinozaki, Nobuaki; Yamaguchi, Hiroki; Minami, Shiro; Murayama, Shigeo; Yoshimori, Kozo; Nagayama, Satoshi; Obata, Daisuke; Higashiyama, Masahiko; Masumoto, Akihide; Koretsune, Yukihiro; Kamatani, Yoichiro; Morris, Andrew P.; Horikoshi, Momoko; Terao, Chikashi Share Save Update of the FANTOM web resource: enhancement for studying noncoding genomesNobusada, Tomoe; Yip, Chi Wai; Agrawal, Saumya; Severin, Jessica; Abugessaisa, Imad; Hasegawa, Akira; Hon, Chung Chau; Ide, Satoru; Koido, Masaru; Kondo, Atsushi; Masuya, Hiroshi; Oki, Shinya; Tagami, Michihira; Takada, Toyoyuki; Terao, Chikashi; Thalhath, Nishad; Walker, Scott; Yasuzawa, Kayoko; Shin, Jay W.; de Hoon, Michiel J. L.; Carninci, Piero; Kawaji, Hideya; Kasukawa, Takeya Share Save Population-specific putative causal variants shape quantitative traitsKoyama, Satoshi; Liu, Xiaoxi; Koike, Yoshinao; Hikino, Keiko; Koido, Masaru; Li, Wei; Akaki, Kotaro; Tomizuka, Kohei; Ito, Shuji; Otomo, Nao; Suetsugu, Hiroyuki; Yoshino, Soichiro; Akiyama, Masato; Saito, Kohei; Ishikawa, Yuki; Benner, Christian; Natarajan, Pradeep; Ellinor, Patrick T.; Mushiroda, Taisei; Horikoshi, Momoko; Ikeda, Masashi; Iwata, Nakao; Matsuda, Koichi; Niida, Shumpei; Ozaki, Kouichi; Momozawa, Yukihide; Ikegawa, Shiro; Takeuchi, Osamu; Ito, Kaoru; Terao, Chikashi Share Save RNF213 Variants, Vasospastic Angina, and Risk of Fatal Myocardial InfarctionHikino, Keiko; Koyama, Satoshi; Ito, Kaoru; Koike, Yoshinao; Koido, Masaru; Matsumura, Takayoshi; Kurosawa, Ryo; Tomizuka, Kohei; Ito, Shuji; Liu, Xiaoxi; Ishikawa, Yuki; Momozawa, Yukihide; Morisaki, Takayuki; Kamatani, Yoichiro; Mushiroda, Taisei; Terao, Chikashi Share Save Causal relevance of different blood pressure traits on risk of cardiovascular diseases: GWAS and Mendelian randomisation in 100,000 Chinese adultsPozarickij, Alfred; Gan, Wei; Lin, Kuang; Clarke, Robert; Fairhurst-Hunter, Zammy; Koido, Masaru; Kanai, Masahiro; Okada, Yukinori; Kamatani, Yoichiro; Bennett, Derrick; Du, Huaidong; Chen, Yiping; Yang, Ling; Avery, Daniel; Guo, Yu; Yu, Min; Yu, Canqing; Valle, Dan Schmidt; Lv, Jun; Chen, Junshi; Peto, Richard; Collins, Rory; Li, Liming; Chen, Zhengming; Millwood, Iona Y.; Walters, Robin G. Share Save Genetically proxied HTRA1 protease activity and circulating levels independently predict risk of ischemic stroke and coronary artery diseaseMalik, Rainer; Beaufort, Nathalie; Li, Jiang; Tanaka, Koki; Georgakis, Marios K.; He, Yunye; Koido, Masaru; Terao, Chikashi; Japan, Biobank; Anderson, Christopher D.; Kamatani, Yoichiro; Zand, Ramin; Dichgans, Martin Share Save Decoding triancestral origins, archaic introgression, and natural selection in the Japanese population by whole-genome sequencingLiu, Xiaoxi; Koyama, Satoshi; Tomizuka, Kohei; Takata, Sadaaki; Ishikawa, Yuki; Ito, Shuji; Kosugi, Shunichi; Suzuki, Kunihiko; Hikino, Keiko; Koido, Masaru; Koike, Yoshinao; Horikoshi, Momoko; Gakuhari, Takashi; Ikegawa, Shiro; Matsuda, Kochi; Momozawa, Yukihide; Ito, Kaoru; Kamatani, Yoichiro; Terao, Chikashi Share Save Genotype imputation accuracy and the quality metrics of the minor ancestry in multi-ancestry reference panelsShi, Mingyang; Tanikawa, Chizu; Munter, Hans Markus; Akiyama, Masato; Koyama, Satoshi; Tomizuka, Kohei; Matsuda, Koichi; Lathrop, Gregory Mark; Terao, Chikashi; Koido, Masaru; Kamatani, Yoichiro Share Save East Asian-specific and cross-ancestry genome-wide meta-analyses provide mechanistic insights into peptic ulcer diseaseHe, Yunye; Koido, Masaru; Sutoh, Yoichi; Shi, Mingyang; Otsuka-Yamasaki, Yayoi; Munter, Hans Markus; Morisaki, Takayuki; Nagai, Akiko; Murakami, Yoshinori; Tanikawa, Chizu; Hachiya, Tsuyoshi; Matsuda, Koichi; Shimizu, Atsushi; Kamatani, Yoichiro Share Save Share Save Evidence of causality of low body mass index on risk of adolescent idiopathic scoliosis: a Mendelian randomization studyOtomo, Nao; Khanshour, Anas M.; Koido, Masaru; Takeda, Kazuki; Momozawa, Yukihide; Kubo, Michiaki; Kamatani, Yoichiro; Herring, John A.; Ogura, Yoji; Takahashi, Yohei; Minami, Shohei; Uno, Koki; Kawakami, Noriaki; Ito, Manabu; Sato, Tatsuya; Watanabe, Kei; Kaito, Takashi; Yanagida, Haruhisa; Taneichi, Hiroshi; Harimaya, Katsumi; Taniguchi, Yuki; Shigematsu, Hideki; Iida, Takahiro; Demura, Satoru; Sugawara, Ryo; Fujita, Nobuyuki; Yagi, Mitsuru; Okada, Eijiro; Hosogane, Naobumi; Kono, Katsuki; Nakamura, Masaya; Chiba, Kazuhiro; Kotani, Toshiaki; Sakuma, Tsuyoshi; Akazawa, Tsutomu; Suzuki, Teppei; Nishida, Kotaro; Kakutani, Kenichiro; Tsuji, Taichi; Sudo, Hideki; Iwata, Akira; Inami, Satoshi; Wise, Carol A.; Kochi, Yuta; Matsumoto, Morio; Ikegawa, Shiro; Watanabe, Kota; Terao, Chikashi Share Save Share Save Genetic Risk Score for Intracranial Aneurysms: Prediction of Subarachnoid Hemorrhage and Role in Clinical HeterogeneityBakker, Mark K.; Kanning, Jos P.; Abraham, Gad; Martinsen, Amy E.; Winsvold, Bendik S.; Zwart, John-Anker; Bourcier, Romain; Sawada, Tomonobu; Koido, Masaru; Kamatani, Yoichiro; Morel, Sandrine; Amouyel, Philippe; Debette, Stephanie; Bijlenga, Philippe; Berrandou, Takiy; Ganesh, Santhi K.; Bouatia-Naji, Nabila; Jones, Gregory; Bown, Matthew; HUNT All In Stroke, Gabriel J. E.; CADISP Grp, Jan H.; Int Consortium Blood Pressure, Ynte M.; Int Headache Genetics Consortium; ISGC; Intracranial Aneurysm Working Grp; Rinkel, Gabriel J. E.; Veldink, Jan; Ruigrok, Ynte Share Save Genetic Architectures Underlie Onset Age of Atopic DermatitisHikino, Keiko; Tanaka, Nao; Koido, Masaru; Tomizuka, Kohei; Koike, Yoshinao; Ito, Shuji; Suzuki, Akari; Momozawa, Yukihide; Kamatani, Yoichiro; Mushiroda, Taisei; Terao, Chikashi Share Save Prediction of the cell-type-specific transcription of non-coding RNAs from genome sequences via machine learningKoido, Masaru; Hon, Chung-Chau; Koyama, Satoshi; Kawaji, Hideya; Murakawa, Yasuhiro; Ishigaki, Kazuyoshi; Ito, Kaoru; Sese, Jun; Parrish, Nicholas F.; Kamatani, Yoichiro; Carninci, Piero; Terao, Chikashi Share Save Multi-ancestry genome-wide association analyses identify novel genetic mechanisms in rheumatoid arthritisIshigaki, Kazuyoshi; Sakaue, Saori; Terao, Chikashi; Luo, Yang; Sonehara, Kyuto; Yamaguchi, Kensuke; Amariuta, Tiffany; Too, Chun Lai; Laufer, Vincent A.; Scott, Ian C.; Viatte, Sebastien; Takahashi, Meiko; Ohmura, Koichiro; Murasawa, Akira; Hashimoto, Motomu; Ito, Hiromu; Hammoudeh, Mohammed; Al Emadi, Samar; Masri, Basel K.; Halabi, Hussein; Badsha, Humeira; Uthman, Imad W.; Wu, Xin; Lin, Li; Li, Ting; Plant, Darren; Barton, Anne; Orozco, Gisela; Verstappen, Suzanne M. M.; Bowes, John; MacGregor, Alexander J.; Honda, Suguru; Koido, Masaru; Tomizuka, Kohei; Kamatani, Yoichiro; Tanaka, Hiroaki; Tanaka, Eiichi; Suzuki, Akari; Maeda, Yuichi; Yamamoto, Kenichi; Miyawaki, Satoru; Xie, Gang; Zhang, Jinyi; Amos, Christopher, I; Keystone, Edward; Wolbink, Gertjan; Van der Horst-Bruinsma, Irene; Cui, Jing; Liao, Katherine P.; Carroll, Robert J.; Lee, Hye-Soon; Bang, So-Young; Siminovitch, Katherine A.; de Vries, Niek; Alfredsson, Lars; Rantapaa-Dahlqvist, Solbritt; Karlson, Elizabeth W.; Bae, Sang-Cheol; Kimberly, Robert P.; Edberg, Jeffrey C.; Mariette, Xavier; Huizinga, Tom; Dieude, Philippe; Schneider, Matthias; Kerick, Martin; Denny, Joshua C.; Matsuda, Koichi; Matsuo, Keitaro; Mimori, Tsuneyo; Matsuda, Fumihiko; Fujio, Keishi; Tanaka, Yoshiya; Kumanogoh, Atsushi; Traylor, Matthew; Lewis, Cathryn M.; Eyre, Stephen; Xu, Huji; Saxena, Richa; Arayssi, Thurayya; Kochi, Yuta; Ikari, Katsunori; Harigai, Masayoshi; Gregersen, Peter K.; Yamamoto, Kazuhiko; Bridges, S. Louis, Jr.; Padyukov, Leonid; Martin, Javier; Klareskog, Lars; Okada, Yukinori; Raychaudhuri, Soumya Share Save Contribution of Common Genetic Variants to Risk of Early-Onset Ischemic StrokeJaworek, Thomas; Xu, Huichun; Gaynor, Brady J.; Cole, John W.; Rannikmae, Kristiina; Stanne, Tara M.; Tomppo, Liisa; Abedi, Vida; Amouyel, Philippe; Armstrong, Nicole D.; Attia, John; Bell, Steven; Benavente, Oscar R.; Boncoraglio, Giorgio B.; Butterworth, Adam; Carcel-Marquez, Jara; Chen, Zhengming; Chong, Michael; Cruchaga, Carlos; Cushman, Mary; Danesh, John; Debette, Stephanie; Duggan, David J.; Durda, Jon Peter; Engstrom, Gunnar; Enzinger, Chris; Faul, Jessica D.; Fecteau, Natalie S.; Fernandez-Cadenas, Israel; Gieger, Christian; Giese, Anne-Katrin; Grewal, Raji P.; Grittner, Ulrike; Havulinna, Aki S.; Heitsch, Laura; Hochberg, Marc C.; Holliday, Elizabeth; Hu, Jie; Ilinca, Andreea; Irvin, Marguerite R.; Jackson, Rebecca D.; Jacob, Mina A.; Rabionet, Raquel; Jimenez-Conde, Jordi; Johnson, Julie A.; Kamatani, Yoichiro; Kardia, Sharon L. R.; Koido, Masaru; Kubo, Michiaki; Lange, Leslie; Lee, Jin-Moo; Lemmens, Robin; Levi, Christopher R.; Li, Jiang; Li, Liming; Lin, Kuang; Lopez, Haley; Luke, Sothear; Maguire, Jane; McArdle, Patrick F.; McDonough, Caitrin W.; Meschia, James F.; Metso, Tiina; Mueller-Nurasyid, Martina; O'Connor, Timothy D.; O'Donnell, Martin; Peddareddygari, Leema R.; Pera, Joanna; Perry, James A.; Peters, Annette; Putaala, Jukka; Ray, Debashree; Rexrode, Kathryn; Ribases, Marta; Rosand, Jonathan; Rothwell, Peter M.; Rundek, Tatjana; Ryan, Kathleen A.; Sacco, Ralph L.; Salomaa, Veikko; Sanchez-Mora, Cristina; Schmidt, Reinhold; Sharma, Pankaj; Slowik, Agnieszka; Smith, Jennifer A.; Smith, Nicholas L.; Wassertheil-Smoller, Sylvia; Soderholm, Martin; Stine, O. Colin; Strbian, Daniel; Sudlow, Cathie L. M.; Tatlisumak, Turgut; Terao, Chikashi; Thijs, Vincent; Torres-Aguila, Nuria P.; Tregouet, David-Alexandre; Tuladhar, Anil M.; Veldink, Jan H.; Walters, Robin G.; Weir, David R.; Woo, Daniel; Worrall, Bradford B.; Hong, Charles C.; Ross, Owen A.; Zand, Ramin; de Leeuw, Frank-Erik; Lindgren, Arne G.; Pare, Guillaume; Anderson, Christopher D.; Markus, Hugh S.; Jern, Christina; Malik, Rainer; Dichgans, Martin; Mitchell, Braxton D.; Kittner, Steven J. Share Save Share Save 
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