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Paul M. Thomas

university of texas austin

59H-index
185Paper Count
1.1WCitation Count
Published Papers 85
Publication Date
Proteoform-predictor: Increasing the Phylogenetic Reach of Top-Down Proteomics
err2025-03-01
err0
PREAI
errSu, Taojunfeng; Fellers, Ryan T.; Greer, Joseph B.; Leduc, Richard D.; Thomas, Paul M.; Kelleher, Neil L.
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Middle-Down Mass Spectrometry Reveals Activity-Modifying Phosphorylation Barcode in a Class C G Protein-Coupled Receptor
err2022-12-07
err7
errOAAI
errIves, Ashley N.; Dunn, Henry A.; Afsari, Hamid Samareh; Seckler, Henrique Dos Santos; Foroutan, Max J.; Chavez, Erica; Melani, Rafael D.; Fellers, Ryan T.; LeDuc, Richard D.; Thomas, Paul M.; Martemyanov, Kirill A.; Kelleher, Neil L.; Vafabakhsh, Reza
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Response to: Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
err2022-10-01
err1
errOAAI
errMeydan, Sezen; Klepacki, Dorota; Karthikeyan, Subbulakshmi; Margus, Tonu; Thomas, Paul; Jones, John E.; Khan, Yousuf A.; Briggs, Joseph; Dinman, Jonathan D.; Vazquez-Laslop, Nora; Mankin, Alexander S.
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Proteoform-Selective Imaging of Tissues Using Mass Spectrometry
err2022-05-17
err29
errOAAI
errYang, Manxi; Hu, Hang; Su, Pei; Thomas, Paul M.; Camarillo, Jeannie M.; Greer, Joseph B.; Early, Bryan P.; Fellers, Ryan T.; Kelleher, Neil L.; Laskin, Julia
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A mixed-valent Fe(II)Fe(III) species converts cysteine to an oxazolone/thioamide pair in methanobactin biosynthesis
err2022-03-23
err21
errOAAI
errPark, Yun Ji; Jodts, Richard J.; Slater, Jeffrey W.; Reyes, Reyvin M.; Winton, Valerie J.; Montaser, Rana A.; Thomas, Paul M.; Dowdle, William B.; Ruiz, Anahi; Kelleher, Neil L.; Bollinger, J. Martin, Jr.; Krebs, Carsten; Hoffman, Brian M.; Rosenzweig, Amy C.
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ProSight Annotator: Complete control and customization of protein entries in UniProt XML files
err2022-03-23
err8
errOAAI
errGreer, Joseph B.; Early, Bryan P.; Durbin, Kenneth R.; Patrie, Steven M.; Thomas, Paul M.; Kelleher, Neil L.; LeDuc, Richard D.; Fellers, Ryan T.
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Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms
err2022-03-15
err20
errOAAI
errLeDuc, Richard D.; Deutsch, Eric W.; Binz, Pierre-Alain; Fellers, Ryan T.; Cesnik, Anthony J.; Klein, Joshua A.; Van den Bossche, Tim; Gabriels, Ralf; Yalavarthi, Arshika; Perez-Riverol, Yasset; Carver, Jeremy; Bittremieux, Wout; Kawano, Shin; Pullman, Benjamin; Bandeira, Nuno; Kelleher, Neil L.; Thomas, Paul M.; Vizcaino, Juan Antonio
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The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms
err2021-11-19
err22
errOAAI
errHollas, Michael A. R.; Robey, Matthew T.; Fellers, Ryan T.; LeDuc, Richard D.; Thomas, Paul M.; Kelleher, Neil L.
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Deeper Protein Identification Using Field Asymmetric Ion Mobility Spectrometry in Top-Down Proteomics
err2021-04-12
err43
errOAAI
errGerbasi, Vincent R.; Melani, Rafael D.; Abbatiello, Susan E.; Belford, Michael W.; Huguet, Romain; McGee, John P.; Dayhoff, Dawson; Thomas, Paul M.; Kelleher, Neil L.
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Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma
err2020-11-25
err19
errOAAI
errAn, Shejuan; Camarillo, Jeannie M.; Huang, Tina Yi-Ting; Li, Daphne; Morris, Juliette A.; Zoltek, Madeline A.; Qi, Jin; Behbahani, Mandana; Kambhampati, Madhuri; Kelleher, Neil L.; Nazarian, Javad; Thomas, Paul M.; Saratsis, Amanda M.
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Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down de novo sequencing
err2020-10-20
err5
errOAAI
errDeighan, W. Ian; Winton, Valerie J.; Melani, Rafael D.; Anderson, Lissa C.; McGee, John P.; Schachner, Luis F.; Barnidge, David; Murray, David; Alexander, H. Denis; Gibson, David S.; Deery, Michael J.; McNicholl, Feargal P.; McLaughlin, Joseph; Kelleher, Neil L.; Thomas, Paul M.
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Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials
err2020-09-02
err10
errOAAI
errZhao, Dan; Cardona, Cesar; Gottel, Neil; Winton, Valerie J.; Thomas, Paul M.; Raba, Daniel A.; Kelley, Scott T.; Henry, Christopher; Gilbert, Jack A.; Stephens, Brent
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Heterologous Expression of the Unusual Terreazepine Biosynthetic Gene Cluster Reveals a Promising Approach for Identifying New Chemical Scaffolds
errMBIO
IF4.7
err2020-08-25
err14
errOAAI
errCaesar, Lindsay K.; Robey, Matthew T.; Swyers, Michael; Islam, Md N.; Ye, Rosa; Vagadia, Purav P.; Schiltz, Gary E.; Thomas, Paul M.; Wu, Chengcang C.; Kelleher, Neil L.; Keller, Nancy P.; Bok, Jin Woo
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The serine hydroxymethyltransferase-2 (SHMT2) initiates lymphoma development through epigenetic tumor suppressor silencing
err2020-06-22
err43
errOAAI
errParsa, Sara; Ortega-Molina, Ana; Ying, Hsia-Yuan; Jiang, Man; Teater, Matt; Wang, Jiahui; Zhao, Chunying; Reznik, Ed; Pasion, Joyce P.; Kuo, David; Mohan, Prathibha; Wang, Shenqiu; Camarillo, Jeannie M.; Thomas, Paul M.; Jain, Neeraj; Garcia-Bermudez, Javier; Cho, Byoung-kyu; Tam, Wayne; Kelleher, Neil L.; Socci, Nicholas; Dogan, Ahmet; De Stanchina, Elisa; Ciriello, Giovanni; Green, Michael R.; Li, Sheng; Birsoy, Kivanc; Melnick, Ari M.; Wendel, Hans-Guido
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NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle
err2020-02-26
err74
errOAAI
errKosciuk, Tatsiana; Price, Ian R.; Zhang, Xiaoyu; Zhu, Chengliang; Johnson, Kayla N.; Zhang, Shuai; Halaby, Steve L.; Komaniecki, Garrison P.; Yang, Min; DeHart, Caroline J.; Thomas, Paul M.; Kelleher, Neil L.; Fromme, J. Christopher; Lin, Hening
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Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics
err2020-02-01
err53
errOAAI
errFornelli, Luca; Srzentic, Kristina; Toby, Timothy K.; Doubleday, Peter F.; Huguet, Romain; Mullen, Christopher; Melani, Rafael D.; Seckler, Henrique dos Santos; DeHart, Caroline J.; Weisbrod, Chad R.; Durbin, Kenneth R.; Greer, Joseph B.; Early, Bryan P.; Fellers, Ryan T.; Zabrouskov, Vlad; Thomas, Paul M.; Compton, Philip D.; Kelleher, Neil L.
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A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli
err2019-12-01
err68
errOAAI
errDes Soye, Benjamin J.; Gerbasi, Vincent R.; Thomas, Paul M.; Kelleher, Neil L.; Jewett, Michael C.
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A clinically relevant murine model unmasks a two-hit mechanism for reactivation and dissemination of cytomegalovirus after kidney transplant
err2019-09-01
err25
errOAAI
errZhang, Zheng; Qiu, Longhui; Yan, Shixian; Wang, Jiao-Jing; Thomas, Paul M.; Kandpal, Manoj; Zhao, Lihui; Iovane, Andre; Liu, Xue-feng; Thorp, Edward B.; Chen, Qing; Hummel, Mary; Kanwar, Yashpal S.; Abecassis, Michael M.
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A five-level classification system for proteoform identifications
err2019-08-26
err67
errOAAI
errSmith, Lloyd M.; Thomas, Paul M.; Shortreed, Michael R.; Schaffer, Leah V.; Fellers, Ryan T.; Leduc, Richard D.; Tucholski, Trisha; Ge, Ying; Agar, Jeffrey N.; Anderson, Lissa C.; Chamot-Rooke, Julia; Gault, Joseph; Loo, Joseph A.; Pasa-Tolic, Ljiljana; Robinson, Carol V.; Schlueter, Hartmut; Tsybin, Yury O.; Vilaseca, Marta; Vizcaino, Juan Antonio; Danis, Paul O.; Kelleher, Neil L.
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Coupling Fluorescence-Activated Cell Sorting and Targeted Analysis of Histone Modification Profiles in Primary Human Leukocytes
err2019-07-08
err9
errOAAI
errCamarillo, Jeannie M.; Swaminathan, Suchitra; Abshiru, Nebiyu A.; Sikora, Jacek W.; Thomas, Paul M.; Kelleher, Neil L.
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