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Ben C. Collins

Institute of Molecular Systems Biology

36H-index
103Paper Count
8.7KCitation Count
Published Papers 61
Publication Date
Complex assembly and activity states as multifaceted protein attributes explaining phenotypic variability
err2026-07-22
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errOAAI
errGeorge Rosenberger; Peng Xue; Isabell Bludau; Claudia Martelli; Evan Williams; Ben C Collins; Andrea Califano; Yansheng Liu; Ruedi Aebersold
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Spatial distribution of the proteome in the human body and in cancers
errNature
IF48.5
err2026-06-17
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errOAAI
errLiang Yue; Wenhao Jiang; Sainan Li; Meng Luo; Ning Fan; Xiaolu Zhan; Rui Sun; Honghan Cheng; Zhangzhi Xue; Tong Liu; Qianhe Zhou; Kexin Chen; Tian Lu; Fang Guo; Dongwei Li; Weigang Ge; Zongxiang Nie; Mengge Lyu; Jun A; Yingrui Wang; Yingdan Chen; Zhenhai Fu; Nan Xiang; Lu Li; Fengchao Yu; Guo Ci Teo; Alexey I. Nesvizhskii; Meng Wang; Michael P. Snyder; Ben C. Collins; Qi Xiao; Ruedi Aebersold; Fei Xu; Hui Yang; Sijia Zhang; Yi Han; Yi Zhu; Yong Ji; Yan Li; Tiannan Guo
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LysG-driven transcriptional network rewiring underlies lineage-specific phenotypes in Mycobacterium tuberculosis
err2026-03-23
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errOAAI
errAmir Banaei-Esfahani; Sonia Borrell; Andrej Trauner; Sebastian M. Gygli; Tige R. Rustad; Julia Feldmann; Ludovic C. Gillet; Olga T. Schubert; Christian Beisel; David R. Sherman; Ruedi Aebersold; Sebastien Gagneux; Ben C. Collins
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The 2025 Westlake Autumn Symposium for Al Proteomics and Virtual Cell
err2026-03-07
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errOAAI
errRui Sun; Ruedi Aebersold; Qi Xiao; Matthias Mann; Yan Zhou; Albert J R Heck; Yingrui Wang; Uwe Völker; Xue Cai; Charles Boone; Zizhuo Zhou; Ming Li; Zhen Dong; Brenda Andrews; Shuaiyao Wang; Joseph Schacherer; Connie Jimenez; Bernd Wollscheid; Liang Yue; Ben C Collins; Heng Jiang; Dong Wang; Liujia Qian; Jia-Xing Yue; Yingying Sun; Edouard Nice; Xiaofan Zhang; Yasset Perez-Riverol; A Jun; Chris Sander; Henning Hermjakob; Wout Bittremieux; Wilson Goh Wen Bin; Ge Gao; Peijie Zhou; Siqi Sun; Han Wen; Ziyan Xu; Tiannan Guo
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Best practices for the collection and analysis of patient experience data from social media for patient-focused drug development
err2026-01-31
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errOAAI
errPhilipp Cimiano; Nicole Brazda; Matthias Hartung; Cornelius Starke-Knäusel; Ana Lucia Schmidt; Maria Carmela De Vuono; Aditya Tyagi; Jürgen Gottowik; Raul Rodriguez-Esteban; Ben Collins; Krzysztof Wieckowski; Thierry Escudier
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Emerging Technologies in Proteomics: Insights from the HUPO ETC Webinar Series
err2026-01-02
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PREAI
errChazarin, Blandine; Chatterjee, Sayantani; Collins, Ben C.; Fert-Bober, Justyna; Huang, Shixia; Kundu, Deepti J.; Lin, Qingsong; Liu, Yansheng; Low, Teck Yew; Saba, Julian; Sabido, Eduard; Searle, Brian C.; Palmisano, Giuseppe
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A dimensional analysis of autism: The role of basic socio-cognitive skills for social competence in children
err2026-01-01
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PREAI
errLangdon, Mahlee C.; Brown, Amy; Hearps, Stephen J. C.; Davies, Mia J.; Collins, Ben; McDonald, Skye; Turkstra, Lyn S.; Dooley, Julian; Darby, David; Darling, Simone J.; Beauchamp, Miriam H.; Anderson, Vicki A.
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Advancing Scientific Communication in Proteomics
err2025-02-07
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PREAI
errSearle, Brian C.; Chazarin, Blandine; Collins, Ben C.; Kundu, Deepti J.; Huang, Shixia; Lin, Qingsong; Liu, Yansheng; Low, Teck Yew; Saba, Julian; Guo, Tiannan; Palmisano, Giuseppe; Fert-Bober, Justyna
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Freeze-drying donor human milk allows compositional stability for 12 months at ambient temperatures
err2025-01-01
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errOAAI
errCheema, Simran Kaur; Grimwade-Mann, Mike; Weaver, Gillian; Collins, Ben; Shenker, Natalie; Cameron, Simon
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π-HuB: the proteomic navigator of the human body (Vol 636, pg 322, 2024)
errNATURE
IF48.5
err2024-12-23
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PREAI
errHe, Fuchu; Aebersold, Ruedi; Baker, Mark S.; Bian, Xiuwu; Bo, Xiaochen; Chan, Daniel W.; Chang, Cheng; Chen, Luonan; Chen, Xiangmei; Chen, Yu-Ju; Cheng, Heping; Collins, Ben C.; Corrales, Fernando; Cox, Juergen; E, Weinan; Van Eyk, Jennifer E.; Fan, Jia; Faridi, Pouya; Figeys, Daniel; Gao, George Fu; Gao, Wen; Gao, Zu-Hua; Goda, Keisuke; Goh, Wilson Wen Bin; Gu, Dongfeng; Guo, Changjiang; Guo, Tiannan; He, Yuezhong; Heck, Albert J. R.; Hermjakob, Henning; Hunter, Tony; Iyer, Narayanan Gopalakrishna; Jiang, Ying; Jimenez, Connie R.; Joshi, Lokesh; Kelleher, Neil L.; Li, Ming; Li, Yang; Lin, Qingsong; Liu, Cui Hua; Liu, Fan; Liu, Guang-Hui; Liu, Yansheng; Liu, Zhihua; Low, Teck Yew; Lu, Ben; Mann, Matthias; Meng, Anming; Moritz, Robert L.; Nice, Edouard; Ning, Guang; Omenn, Gilbert S.; Overall, Christopher M.; Palmisano, Giuseppe; Peng, Yaojin; Pineau, Charles; Poon, Terence Chuen Wai; Purcell, Anthony W.; Qiao, Jie; Reddel, Roger R.; Robinson, Phillip J.; Roncada, Paola; Sander, Chris; Sha, Jiahao; Song, Erwei; Srivastava, Sanjeeva; Sun, Aihua; Sze, Siu Kwan; Tang, Chao; Tang, Liujun; Tian, Ruijun; Vizcaino, Juan Antonio; Wang, Chanjuan; Wang, Chen; Wang, Xiaowen; Wang, Xinxing; Wang, Yan; Weiss, Tobias; Wilhelm, Mathias; Winkler, Robert; Wollscheid, Bernd; Wong, Limsoon; Xie, Linhai; Xie, Wei; Xu, Tao; Xu, Tianhao; Yan, Liying; Yang, Jing; Yang, Xiao; Yates, John; Yun, Tao; Zhai, Qiwei; Zhang, Bing; Zhang, Hui; Zhang, Lihua; Zhang, Lingqiang; Zhang, Pingwen; Zhang, Yukui; Zheng, Yu Zi; Zhong, Qing; IT-HuB Consortium, Daniel W.
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From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions (vol 17, e9536, 2021)
err2024-10-01
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errOAAI
errMori, Matteo; Zhang, Zhongge; Banaei-Esfahani, Amir; Lalanne, Jean-Benoit; Okano, Hiroyuki; Collins, Ben C.; Schmidt, Alexander; Schubert, Olga T.; Lee, Deok-Sun; Li, Gene-Wei; Aebersold, Ruedi; Hwa, Terence; Ludwig, Christina
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Proteomic Characterisation of Heart Failure Reveals a Unique Molecular Phenotype for Hypertrophic Cardiomyopathy
err2024-08-01
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errOAAI
errTonry, Claire; Linden, Katie; Collier, Patrick; Ledwidge, Mark; McDonald, Ken; Collins, Ben C.; Watson, Chris J.
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Patient listening on social media for patient-focused drug development: a synthesis of considerations from patients, industry and regulators
err2024-03-06
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errOAAI
errCimiano, Philipp; Collins, Ben; De Vuono, Maria Carmela; Escudier, Thierry; Gottowik, Juergen; Hartung, Matthias; Leddin, Mathias; Neupane, Bikalpa; Rodriguez-Esteban, Raul; Schmidt, Ana Lucia; Starke-Knaeusel, Cornelius; Voorhaar, Maarten; Wieckowski, Krzysztof
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Rapid Profiling of Protein Complex Reorganization in Perturbed Systems
err2023-04-14
err10
errOAAI
errBludau, Isabell; Nicod, Charlotte; Martelli, Claudia; Xue, Peng; Heusel, Moritz; Fossati, Andrea; Uliana, Federico; Frommelt, Fabian; Aebersold, Ruedi; Collins, Ben C.
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A gas phase fractionation acquisition scheme integrating ion mobility for rapid diaPASEF library generation
err2023-03-10
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errOAAI
errPenny, Jack; Arefian, Mohammad; Schroeder, Gunnar N.; Bengoechea, Jose A.; Collins, Ben C.
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Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation
err2021-12-01
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errOAAI
errSchreiber, Anne; Collins, Ben C.; Davis, Colin; Enchev, Radoslav, I; Sedra, Angie; D'Antuono, Rocco; Aebersold, Ruedi; Peter, Matthias
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Diagnostics and correction of batch effects in large-scale proteomic studies: a tutorial
err2021-08-25
err57
errOAAI
errCuklina, Jelena; Lee, Chloe H.; Williams, Evan G.; Sajic, Tatjana; Collins, Ben C.; Martinez, Maria Rodriguez; Sharma, Varun S.; Wendt, Fabian; Goetze, Sandra; Keele, Gregory R.; Wollscheid, Bernd; Aebersold, Ruedi; Pedrioli, Patrick G. A.
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Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance
err2021-08-17
err9
errOAAI
errTrauner, Andrej; Banaei-Esfahani, Amir; Gygli, Sebastian M.; Warmer, Philipp; Feldmann, Julia; Zampieri, Mattia; Borrell, Sonia; Collins, Ben C.; Beisel, Christian; Aebersold, Ruedi; Gagneux, Sebastien
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Systematic detection of functional proteoform groups from bottom-up proteomic datasets
err2021-06-21
err38
errOAAI
errBludau, Isabell; Frank, Max; Doerig, Christian; Cai, Yujia; Heusel, Moritz; Rosenberger, George; Picotti, Paola; Collins, Ben C.; Rost, Hannes; Aebersold, Ruedi
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IN-DEPTH PROTEOMIC CHARACTERISATION OF DIFFERENT AETIOLOGIES OF CARDIOMYOPATHY
errHEART
IF4.4
err2021-06-04
err0
errOAAI
errTonry, Claire; Collier, Patrick; Moravec, Christine; Ledwidge, Mark; McDonald, Ken; Collins, Ben
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