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D

Danny Incarnato

university of groningen

35H-index
111Paper Count
5.1KCitation Count
Published Papers 55
Publication Date
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Rapid and reversible regulation of cell cycle progression in budding yeast using optogenetics
errCell Reports Methods
IF4.5
err2026-07-30
err0
errOAAI
errAndriana Koutsoumpa; Catherine Loukogiannaki; Danny Incarnato; Andreas Milias-Argeitis
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FIRST-seq: a nanopore-based cDNA sequencing platform for RNA modification and structure profiling
errGenome Biology
IF9.4
err2026-05-30
err0
errOAAI
errOguzhan Begik; Gregor Diensthuber; Ivana Borovska; John S. Mattick; Danny Incarnato; Eva Maria Novoa
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errSave
Rational design of hammerhead ribozymes as CD93 silencing tools for vascular diseases
errMolecular Therapy Nucleic Acids
IF6.1
err2026-05-25
err0
errOAAI
errCosimo Damiano Perrone; Luisa Raucci; Sara Papini; Gian Marco Tosi; Federico Galvagni; Massimo Olivucci; Danny Incarnato; Maurizio Orlandini
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errSave
Condition-dependent amorphous protein agglomerates control cytoplasmic rheology
errMolecular Cell
IF16.6
err2026-04-10
err0
errOAAI
errJosé Losa; François Simon; Dmitrii Linnik; Saniye Gül Kaya; Marc C.A. Stuart; Artem Stetsenko; Rinse de Boer; Franz Y. Ho; Danny Incarnato; Jan Stevens; Jan van Eck; Marco W. Fraaije; Lucien E. Weiss; Sven van Teeffelen; Sanne Abeln; Albert Guskov; Siewert-Jan Marrink; Bert Poolman; Matthias Heinemann
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errSave
RNA functional modulation by Mitoxantrone via RNA structural ensemble repartitioning
errNature Communications
IF15.7
err2026-03-23
err0
errOAAI
errChundan Zhang; Ivana Borovská; Teona Iobashvili; Edoardo Morandi; Marta Lionnez; Oluwatosin S. Olayinka; Rinse de Boer; Massimiliano Clamer; Martin D. Witte; Klaus Pors; John S. Schneekloth; Danny Incarnato
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errSave
Site-Selective Ligand Selection by Mutational Profiling for Covalent RNA Targeting
errAngewandte Chemie International Edition
IF16.9
err2025-12-23
err0
errOAAI
errPhillip Yesley; Georgia Poulladofonou; Danny Incarnato; Willem A. Velema
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errSave
Nucleotide dependency analysis of genomic language models detects functional elements
errNature Genetics
IF29
err2025-10-10
err0
errOAAI
errPedro Tomaz da Silva; Alexander Karollus; Johannes Hingerl; Gihanna Sta. Teresa Galindez; Nils Wagner; Xavier Hernandez-Alias; Danny Incarnato; Julien Gagneur
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errSave
Identification of conserved RNA regulatory switches in living cells using RNA secondary structure ensemble mapping and covariation analysis
errNature Biotechnology
IF41.7
err2025-07-25
err0
errOAAI
errIvana Borovská; Chundan Zhang; Sarah-Luisa J. Dülk; Edoardo Morandi; Marta F. S. Cardoso; Billal M. Bourkia; Daphne A. L. van den Homberg; Michael T. Wolfinger; Willem A. Velema; Danny Incarnato
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errSave
Low butyrate concentrations exert anti-inflammatory and high concentrations exert pro-inflammatory effects on macrophages
errnutritional biochemistry
IF0
err2025-05-15
err0
PREAI
errMuwei Jiang; Danny Incarnato; Rutger Modderman; Aina Altimira Lazaro; Iris H. Jonkers; Frans Bianchi; Geert van den Bogaart
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errSave
Structural and biophysical dissection of RNA conformational ensembles
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2024-10-01
err0
errOAAI
errBonilla, Steve L.; Jones, Alisha N.; Incarnato, Danny
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errSave
SHAPEwarp-web: sequence-agnostic search for structurally homologous RNA regions across databases of chemical probing data
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-05-06
err0
errOAAI
errScholten, Niek R.; Haandrikman, Dennis; Tolhuis, Joshua O.; Morandi, Edoardo; Incarnato, Danny
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errSave
Investigating the NRAS 5′ UTR as a target for small molecules
errCELL CHEMICAL BIOLOGY
IF7.2
err2023-06-01
err11
errOAAI
errBalaratnam, Sumirtha; Torrey, Zachary R.; Calabrese, David R.; Banco, Michael T.; Yazdani, Kamyar; Liang, Xiao; Fullenkamp, Christopher R.; Seshadri, Srinath; Holewinski, Ronald J.; Andresson, Thorkell; Ferre-D'Amare, Adrian R.; Incarnato, Danny; Schneekloth, John S., Jr.
errShare
errSave
p140Cap inhibits β-Catenin in the breast cancer stem cell compartment instructing a protective anti-tumor immune response
errNATURE COMMUNICATIONS
IF15.7
err2023-05-11
err6
errOAAI
errSalemme, Vincenzo; Vedelago, Mauro; Sarcinella, Alessandro; Moietta, Federico; Piccolantonio, Alessio; Moiso, Enrico; Centonze, Giorgia; Manco, Marta; Guala, Andrea; Lamolinara, Alessia; Angelini, Costanza; Morellato, Alessandro; Natalini, Dora; Calogero, Raffaele; Incarnato, Danny; Oliviero, Salvatore; Conti, Laura; Iezzi, Manuela; Tosoni, Daniela; Bertalot, Giovanni; Freddi, Stefano; Tucci, Francesco A.; De Sanctis, Francesco; Frusteri, Cristina; Ugel, Stefano; Bronte, Vincenzo; Cavallo, Federica; Provero, Paolo; Gai, Marta; Taverna, Daniela; Turco, Emilia; Pece, Salvatore; Defilippi, Paola
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errSave
m6A-driven SF3B1 translation control steers splicing to direct genome integrity and leukemogenesis
errMOLECULAR CELL
IF16.6
err2023-04-01
err11
errOAAI
errCiesla, Maciej; Ngoc, Phuong Cao Thi; Muthukumar, Sowndarya; Todisco, Gabriele; Madej, Magdalena; Fritz, Helena; Dimitriou, Marios; Incarnato, Danny; Hellstrom-Lindberg, Eva; Bellodi, Cristian
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errSave
FOSL1 Controls the Assembly of Endothelial Cells into Capillary Tubes by Direct Repression of αv and β3 Integrin Transcription
errMOLECULAR AND CELLULAR BIOLOGY
IF2.7
err2023-03-20
err47
errOAAI
errEvellin, Sandrine; Galvagni, Federico; Zippo, Alessio; Neri, Francesco; Orlandini, Maurizio; Incarnato, Danny; Dettori, Daniela; Neubauer, Stefanie; Kessler, Horst; Wagner, Erwin F.; Oliviero, Salvatore
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errSave
DNMT3B supports meso-endoderm differentiation from mouse embryonic stem cells
errNATURE COMMUNICATIONS
IF15.7
err2023-01-23
err8
errOAAI
errLauria, Andrea; Meng, Guohua; Proserpio, Valentina; Rapelli, Stefania; Maldotti, Mara; Polignano, Isabelle Laurence; Anselmi, Francesca; Incarnato, Danny; Krepelova, Anna; Donna, Daniela; Levron, Chiara Levra; Donati, Giacomo; Molineris, Ivan; Neri, Francesco; Oliviero, Salvatore
errShare
errSave
Probing the dynamic RNA structurome and its functions
errNATURE REVIEWS GENETICS
IF52
err2022-11-08
err77
errOAAI
errSpitale, Robert C.; Incarnato, Danny
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errSave
Specific transcriptional programs differentiate ICOS from CD28 costimulatory signaling in human Naive CD4+ T cells
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2022-09-05
err1
errOAAI
errGigliotti, Casimiro Luca; Boggio, Elena; Favero, Francesco; Incarnato, Danny; Santoro, Claudio; Oliviero, Salvatore; Rojo, Jose Maria; Zucchelli, Silvia; Persichetti, Francesca; Baldanzi, Gianluca; Dianzani, Umberto; Cora, Davide
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errSave
SHAPE-guided RNA structure homology search and motif discovery
errNATURE COMMUNICATIONS
IF15.7
err2022-03-31
err10
errOAAI
errMorandi, Edoardo; van Hemert, Martijn J.; Incarnato, Danny
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errSave
The acetyltransferase p300 is recruited in trans to multiple enhancer sites by lncSmad7
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-02-07
err10
errOAAI
errMaldotti, Mara; Lauria, Andrea; Anselmi, Francesca; Molineris, Ivan; Tamburrini, Annalaura; Meng, Guohua; Polignano, Isabelle Laurence; Scrivano, Mirko Giuseppe; Campestre, Fabiola; Simon, Lisa Marie; Rapelli, Stefania; Morandi, Edoardo; Incarnato, Danny; Oliviero, Salvatore
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Research Directions

No research directions
Co-authors
Cooperation Journals
E
Erwin F. Wagner
H-index: 127 · Papers: 512
J
John S. Mattick
H-index: 124 · Papers: 490
G
Gianluca Gaïdano
H-index: 113 · Papers: 1.5K
H
Horst Kessler
H-index: 111 · Papers: 1.0K
G
Giovanni Camussi
H-index: 101 · Papers: 823
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