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Nick Goldman

European Bioinformatics Institute

66H-index
191Paper Count
3.9WCitation Count
Published Papers 75
Publication Date
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Rate variation and recurrent sequence errors in pandemic-scale phylogenetics
errNature Methods
IF32.1
err2026-02-09
err0
errOAAI
errNicola De Maio; Myrthe Willemsen; Samuel Martin; Zihao Guo; Abhratanu Saha; Martin Hunt; Nhan Ly-Trong; Bui Quang Minh; Zamin Iqbal; Nick Goldman
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errSave
Assessing phylogenetic confidence at pandemic scales
errNature
IF48.5
err2025-11-05
err0
errOAAI
errNicola De Maio; Nhan Ly-Trong; Samuel Martin; Bui Quang Minh; Nick Goldman
errShare
errSave
Highly Recurrent Multinucleotide Mutations in SARS-CoV-2
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-11-01
err0
errOAAI
errDe Maio, Nicola; Anoufa, Olivier; Smith, Kyle; Turakhia, Yatish; Goldman, Nick
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errSave
Raman identification of single nucleotides flowing through permeable plasmonic films
errNature Communications
IF15.7
err2025-10-14
err0
errOAAI
errKirill Khabarov; Maria Blanco Formoso; Ilaria Micol Baldi; Foroogh Khozeymeh Sarbishe; Riccardo Marongiu; Giulia Bruno; Bikash Bhandari; Veronica Storari; Henri Haka; Michele Dipalo; Paolo Canepa; Francesco Gentile; Nick Goldman; Federica Villa; Francesco Tantussi; Francesco De Angelis
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errSave
Detecting Interspecific Positive Selection Using Convolutional Neural Networks
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-07-01
err0
errOAAI
errWest, Charlotte; Walker, Conor R.; Arasti, Shayesteh; Vasilev, Viacheslav; Xu, Xingze; De Maio, Nicola; Goldman, Nick
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errSave
A Protocol Using Compact 3D Printed Micro-Optical Elements for Protein Identification from Low-Intensity Amino-Acid Raman Signals
errADVANCED MATERIALS TECHNOLOGIES
IF6.2
err2025-01-23
err0
errOAAI
errWeinacker, Jannis; Bhandari, Bikash Kumar; Rodriguez, Alba Viejo; West, Charlotte; De Angelis, Francesco; Tantussi, Francesco; Maccaferri, Nicolo; Goldman, Nick; Wegener, Martin
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errSave
A generalized protein identification method for novel and diverse sequencing technologies
errgenomics proteomics bioinformatics
IF2.8
err2024-09-18
err1
errOAAI
errBhandari, Bikash Kumar; Goldman, Nick
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errSave
Diversity and specificity of molecular functions in cyanobacterial symbionts
errSCIENTIFIC REPORTS
IF3.9
err2024-08-12
err2
errOAAI
errCameron, Ellen S.; Sanchez, Santiago; Goldman, Nick; Blaxter, Mark L.; Finn, Robert D.
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errSave
Detection of hidden antibiotic resistance through real-time genomics
errNATURE COMMUNICATIONS
IF15.7
err2024-06-28
err2
errOAAI
errSauerborn, Ela; Corredor, Nancy Carolina; Reska, Tim; Perlas, Albert; Atum, Samir Vargas da Fonseca; Goldman, Nick; Wantia, Nina; da Costa, Clarissa Prazeres; Foster-Nyarko, Ebenezer; Urban, Lara
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errSave
DNA Sequences Are as Useful as Protein Sequences for Inferring Deep Phylogenies
errSYSTEMATIC BIOLOGY
IF5.7
err2023-06-27
err9
errOAAI
errKapli, Paschalia; Kotari, Ioanna; Telford, Maximilian J.; Goldman, Nick; Yang, Ziheng
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errSave
Maximum likelihood pandemic-scale phylogenetics
errNATURE GENETICS
IF31.8
err2023-04-10
err21
errOAAI
errDe Maio, Nicola; Kalaghatgi, Prabhav; Turakhia, Yatish; Corbett-Detig, Russell; Minh, Bui Quang; Goldman, Nick
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errSave
Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design
errNATURE BIOTECHNOLOGY
IF41.7
err2023-01-02
err26
errOAAI
errWeilguny, Lukas; De Maio, Nicola; Munro, Rory; Manser, Charlotte; Birney, Ewan; Loose, Matthew; Goldman, Nick
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errSave
A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2021-09-01
err53
errOAAI
errMcBroome, Jakob; Thornlow, Bryan; Hinrichs, Angie S.; Kramer, Alexander; De Maio, Nicola; Goldman, Nick; Haussler, David; Corbett-Detig, Russell; Turakhia, Yatish
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errSave
Genetic Variability of the SARS-CoV-2 Pocketome
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2021-06-28
err23
errOAAI
errYazdani, Setayesh; De Maio, Nicola; Ding, Yining; Shahani, Vijay; Goldman, Nick; Schapira, Matthieu
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errSave
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2021-04-24
err73
errOAAI
errDe Maio, Nicola; Walker, Conor R.; Turakhia, Yatish; Lanfear, Robert; Corbett-Detig, Russell; Goldman, Nick
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errSave
Short-range template switching in great ape genomes explored using pair hidden Markov models
errPLOS GENETICS
IF3.7
err2021-03-02
err13
errOAAI
errWalker, Conor R.; Scally, Aylwyn; De Maio, Nicola; Goldman, Nick
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errSave
Want to track pandemic variants faster? Fix the bioinformatics bottleneck Comment
errNATURE
IF48.5
err2021-03-01
err62
PREAI
errHodcroft, Emma B.; De Maio, Nicola; Lanfear, Rob; MacCannell, Duncan R.; Minh, Bui Quang; Schmidt, Heiko A.; Stamatakis, Alexandros; Goldman, Nick; Dessimoz, Christophe
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errSave
Stability of SARS-CoV-2 phylogenies
errPLOS GENETICS
IF3.7
err2020-11-18
err64
errOAAI
errTurakhia, Yatish; De Maio, Nicola; Thornlow, Bryan; Gozashti, Landen; Lanfear, Robert; Walker, Conor R.; Hinrichs, Angie S.; Fernandes, Jason D.; Borges, Rui; Slodkowicz, Greg; Weilguny, Lukas; Haussler, David; Goldman, Nick; Corbett-Detig, Russell
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errSave
Ambiguity Coding Allows Accurate Inference of Evolutionary Parameters from Alignments in an Aggregated State-Space
errSYSTEMATIC BIOLOGY
IF5.7
err2020-04-30
err1
errOAAI
errWeber, Claudia C.; Perron, Umberto; Casey, Dearbhaile; Yang, Ziheng; Goldman, Nick
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errSave
Integrated structural and evolutionary analysis reveals common mechanisms underlying adaptive evolution in mammals
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-03-02
err31
errOAAI
errSlodkowicz, Greg; Goldman, Nick
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
D
David Haussler
H-index: 175 · Papers: 720
R
Rasmus Nielsen
H-index: 151 · Papers: 525
S
Stylianos E. Antonarakis
H-index: 146 · Papers: 918
E
Ewan Birney
H-index: 142 · Papers: 500
D
David Hume
H-index: 140 · Papers: 1.9K
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