John F. Marko - Publications, H-index & Citations

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John F. Marko

Universite PSL

72H-index

339Paper Count

2.0WCitation Count

Published Papers 105

Publication Date

Compaction and swelling of single stretched DNAs driven by molecular crowding

Physical Review E

IF2.4

2026-05-06

PREAI

Gupta, Paritosh; Marko, John F.; Scolari, Vittore F.

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RNA interacts with topoisomerase I to adjust DNA topology

MOLECULAR CELL

IF16.6

2024-09-01

PREAI

Bhola, Mannan; Abe, Kouki; Orozco, Paola; Rahnamoun, Homa; Avila-Lopez, Pedro; Taylor, Elijah; Muhammad, Nefertiti; Liu, Bei; Patel, Prachi; Marko, John F.; Starner, Anne C.; He, Chuan; Nostrand, Eric L. Van; Mondragon, Alfonso; Lauberth, Shannon M.

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DNA tension-modulated translocation and loop extrusion by SMC complexes revealed by molecular dynamics simulations

NUCLEIC ACIDS RESEARCH

IF13.1

2022-04-26

OAAI

Nomidis, Stefanos K.; Carlon, Enrico; Gruber, Stephan; Marko, John F.

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High-resolution, genome-wide mapping of positive supercoiling in chromosomes

ELIFE

IF0

2021-07-19

OAAI

Guo, Monica S.; Kawamura, Ryo; Littlehale, Megan L.; Marko, John F.; Laub, Michael T.

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HP1α is a chromatin crosslinker that controls nuclear and mitotic chromosome mechanics

ELIFE

IF0

2021-06-09

OAAI

Strom, Amy R.; Biggs, Ronald J.; Banigan, Edward J.; Wang, Xiaotao; Chiu, Katherine; Herman, Cameron; Collado, Jimena; Yue, Feng; Politz, Joan C. Ritland; Tait, Leah J.; Scalzo, David; Telling, Agnes; Groudine, Mark; Brangwynne, Clifford P.; Marko, John F.; Stephens, Andrew D.

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Single-molecule micromanipulation studies of methylated DNA

BIOPHYSICAL JOURNAL

IF3.1

2021-06-01

OAAI

Zaichuk, Tetiana; Marko, John F.

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Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics

NATURE GENETICS

IF31.8

2021-02-11

OAAI

Belaghzal, Houda; Borrman, Tyler; Stephens, Andrew D.; Lafontaine, Denis L.; Venev, Sergey V.; Weng, Zhiping; Marko, John F.; Dekker, Job

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The Smc5/6 Core Complex Is a Structure-Specific DNA Binding and Compacting Machine

MOLECULAR CELL

IF16.6

2020-12-01

OAAI

Serrano, Diego; Cordero, Gustavo; Kawamura, Ryo; Sverzhinsky, Aleksandr; Sarker, Muzaddid; Roy, Shamayita; Malo, Catherine; Pascal, John M.; Marko, John F.; D'Amours, Damien

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Coarse-grained modelling of DNA plectoneme pinning in the presence of base-pair mismatches

NUCLEIC ACIDS RESEARCH

IF13.1

2020-10-12

OAAI

Desai, Parth Rakesh; Brahmachari, Sumitabha; Marko, John F.; Das, Siddhartha; Neuman, Keir C.

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Micromanipulation of prophase I chromosomes from mouse spermatocytes reveals high stiffness and gel-like chromatin organization

COMMUNICATIONS BIOLOGY

IF5.1

2020-09-30

OAAI

Biggs, Ronald J.; Liu, Ning; Peng, Yiheng; Marko, John F.; Qiao, Huanyu

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Chromosome organization by one-sided and two-sided loop extrusion

ELIFE

IF0

2020-04-06

OAAI

Banigan, Edward J.; van den Berg, Aafke A.; Brandao, Hugo B.; Marko, John F.; Mirny, Leonid A.

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How do DNA-bound proteins leave their binding sites? The role of facilitated dissociation

CURRENT OPINION IN CHEMICAL BIOLOGY

IF6.1

2019-12-01

OAAI

Erbas, Aykut; Marko, John F.

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Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2019-11-22

OAAI

Brahmachari, Sumitabha; Marko, John F.

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Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation

MOLECULAR BIOLOGY OF THE CELL

IF2.7

2019-08-01

OAAI

Stephens, Andrew D.; Liu, Patrick Z.; Kandula, Viswajit; Chen, Haimei; Almassalha, Luay M.; Herman, Cameron; Backman, Vadim; O'Halloran, Thomas; Adam, Stephen A.; Goldman, Robert D.; Banigan, Edward J.; Marko, John F.

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Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force

SCIENTIFIC REPORTS

IF3.9

2019-07-31

OAAI

Renn, J. P.; Bhattacharyya, S.; Bai, H.; He, C.; Li, H.; Oberhauser, A. F.; Marko, J. F.; Makarov, D. E.; Matouschek, A.

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DNA-segment-capture model for loop extrusion by structural maintenance of chromosome (SMC) protein complexes

NUCLEIC ACIDS RESEARCH

IF13.1

2019-06-08

OAAI

Marko, John F.; De Los Rios, Paolo; Barducci, Alessandro; Gruber, Stephan

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Chromatin's physical properties shape the nucleus and its functions

CURRENT OPINION IN CELL BIOLOGY

IF4.3

2019-06-01

131

OAAI

Stephens, Andrew D.; Banigan, Edward J.; Marko, John F.

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Receptor-Ligand Rebinding Kinetics in Confinement

BIOPHYSICAL JOURNAL

IF3.1

2019-05-01

OAAI

Erbas, Aykut; Olvera de la Cruz, Monica; Marko, John F.

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Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm

NATURE COMMUNICATIONS

IF15.7

2019-04-10

OAAI

Gladstein, Scott; Almassalha, Luay M.; Cherkezyan, Lusik; Chandler, John E.; Eshein, Adam; Eid, Aya; Zhang, Di; Wu, Wenli; Bauer, Greta M.; Stephens, Andrew D.; Morochnik, Simona; Subramanian, Hariharan; Marko, John F.; Ameer, Guillermo A.; Szleifer, Igal; Backman, Vadim

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Effects of altering histone posttranslational modifications on mitotic chromosome structure and mechanics

MOLECULAR BIOLOGY OF THE CELL

IF2.7

2019-03-21

OAAI

Biggs, Ronald; Liu, Patrick Z.; Stephens, Andrew D.; Marko, John F.

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Research Directions