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Michael E. Alfaro

University of California, Los Angeles

64H-index
216Paper Count
1.5WCitation Count
Published Papers 82
Publication Date
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charisma: An R package to perform reproducible colour characterization of digital images for biological studies
errMethods in Ecology and Evolution
IF6.2
err2026-04-27
err0
errOAAI
errShawn T. Schwartz; Whitney L. E. Tsai; Elizabeth A. Karan; Mark S. Juhn; Allison J. Shultz; John E. McCormack; Thomas B. Smith; Michael E. Alfaro
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Explosion of goby fish diversity at the Eocene-Oligocene transition
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2025-06-01
err0
PREAI
errMcCraney, W. Tyler; Thacker, Christine E.; Faircloth, Brant C.; Harrington, Richard C.; Near, Thomas J.; Alfaro, Michael E.
errShare
errSave
Assessment of a non-invasive approach for pressure volume loop prediction in mice
errSCIENTIFIC REPORTS
IF3.9
err2025-05-25
err0
errOAAI
errReyes, Liliana Jelu; Alfaro, Maria Emilia; Kireta, Janet Akoth; Joyner, Michele Lynn; Ullas, Soumya; Laviolette, Brianna; Hirenallur-Shanthappa, Dinesh; Tania, Nessy
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errSave
Considering Decoupled Phenotypic Diversification Between Ontogenetic Phases in Macroevolution: An Example Using Triggerfishes (Balistidae)
errSYSTEMATIC BIOLOGY
IF5.7
err2024-03-15
err0
errOAAI
errDornburg, Alex; Zapfe, Katerina L.; Williams, Rachel; Alfaro, Michael E.; Morris, Richard; Adachi, Haruka; Flores, Joseph; Santini, Francesco; Near, Thomas J.; Frederich, Bruno
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errSave
A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia)
errJOURNAL OF HEREDITY
IF2.5
err2024-02-24
err1
errOAAI
errTsai, Whitney L. E.; Escalona, Merly; Garrett, Kimball L.; Terrill, Ryan S.; Sahasrabudhe, Ruta; Nguyen, Oanh; Beraut, Eric; Seligmann, William; Fairbairn, Colin W.; Harrigan, Ryan J.; Mccormack, John E.; Alfaro, Michael E.; Smith, Thomas B.; Bay, Rachael A.
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errSave
Mechanisms of equality and inequality in mammalian societies
errPHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF4.7
err2023-06-26
err7
errOAAI
errSmith, Jennifer E.; Natterson-Horowitz, Barbara; Mueller, Maddison M.; Alfaro, Michael E.
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errSave
Prolonged morphological expansion of spiny-rayed fishes following the end-Cretaceous
errNATURE ECOLOGY & EVOLUTION
IF14.5
err2022-07-14
err60
errOAAI
errGhezelayagh, Ava; Harrington, Richard C.; Burress, Edward D.; Campbell, Matthew A.; Buckner, Janet C.; Chakrabarty, Prosanta; Glass, Jessica R.; McCraney, W. Tyler; Unmack, Peter J.; Thacker, Christine E.; Alfaro, Michael E.; Friedman, Sarah T.; Ludt, William B.; Cowman, Peter F.; Friedman, Matt; Price, Samantha A.; Dornburg, Alex; Faircloth, Brant C.; Wainwright, Peter C.; Near, Thomas J.
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errSave
Keels of boxfish carapaces strongly improve stabilization against roll
errJOURNAL OF THE ROYAL SOCIETY INTERFACE
IF3.5
err2022-04-27
err2
errOAAI
errVan Gorp, Merel J. W.; Goyens, Jana; Alfaro, Michael E.; Van Wassenbergh, Sam
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errSave
Sashimi: A toolkit for facilitating high-throughput organismal image segmentation using deep learning
errMETHODS IN ECOLOGY AND EVOLUTION
IF6.2
err2021-09-18
err14
errOAAI
errSchwartz, Shawn T.; Alfaro, Michael E.
errShare
errSave
SARS-CoV-2: Cross-scale Insights from Ecology and Evolution
errTRENDS IN MICROBIOLOGY
IF14.9
err2021-07-01
err10
errOAAI
errSnedden, Celine E.; Makanani, Sara K.; Schwartz, Shawn T.; Gamble, Amandine; Blakey, Rachel, V; Borremans, Benny; Helman, Sarah K.; Espericueta, Luisa; Valencia, Alondra; Endo, Andrew; Alfaro, Michael E.; Lloyd-Smith, James O.
errShare
errSave
Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes
errSYSTEMATIC BIOLOGY
IF5.7
err2021-06-07
err49
errOAAI
errMelo, Bruno F.; Sidlauskas, Brian L.; Near, Thomas J.; Roxo, Fabio F.; Ghezelayagh, Ava; Ochoa, Luz E.; Stiassny, Melanie L. J.; Arroyave, Jairo; Chang, Jonathan; Faircloth, Brant C.; MacGuigan, Daniel J.; Harrington, Richard C.; Benine, Ricardo C.; Burns, Michael D.; Hoekzema, Kendra; Sanches, Natalia C.; Maldonado-Ocampo, Javier A.; Castro, Ricardo M. C.; Foresti, Fausto; Alfaro, Michael E.; Oliveira, Claudio
errShare
errSave
Supermatrix phylogeny resolves goby lineages and reveals unstable root of Gobiaria
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2020-10-01
err45
PREAI
errMcCraney, W. Tyler; Thacker, Christine E.; Alfaro, Michael E.
errShare
errSave
On the Effect of Asymmetrical Trait Inheritance on Models of Trait Evolution
errSYSTEMATIC BIOLOGY
IF5.7
err2020-07-18
err15
errOAAI
errDuchen, Pablo; Alfaro, Michael L.; Rolland, Jonathan; Salamin, Nicolas; Silvestro, Daniele
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errSave
Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements
errSCIENTIFIC REPORTS
IF3.9
err2020-02-14
err58
errOAAI
errOchoa, Luz E.; Datovo, Alessio; DoNascimiento, Carlos; Roxo, Fabio F.; Sabaj, Mark H.; Chang, Jonathan; Melo, Bruno F.; Silva, Gabriel S. C.; Foresti, Fausto; Alfaro, Michael; Oliveira, Claudio
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errSave
Estimating Diversification Rates on Incompletely Sampled Phylogenies: Theoretical Concerns and Practical Solutions
errSYSTEMATIC BIOLOGY
IF5.7
err2019-12-05
err70
PREAI
errChang, Jonathan; Rabosky, Daniel L.; Alfaro, Michael E.
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errSave
A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean
errPROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF3.5
err2019-09-11
err38
errOAAI
errFriedman, Matt; Feilich, Kara L.; Beckett, Hermione T.; Alfaro, Michael E.; Faircloth, Brant C.; Cerny, David; Miya, Masaki; Near, Thomas J.; Harrington, Richard C.
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errSave
Phylogenomic reappraisal of the Neotropical catfish family Loricariidae (Teleostei: Siluriformes) using ultraconserved elements
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2019-06-01
err84
PREAI
errRoxo, Fabio F.; Ochoa, Luz E.; Sabaj, Mark H.; Lujan, Nathan K.; Covain, Raphael; Silva, Gabriel S. C.; Melo, Bruno F.; Albert, James S.; Chang, Jonathan; Foresti, Fausto; Alfaro, Michael E.; Oliveira, Claudio
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errSave
An r package and online resource for macroevolutionary studies using the ray-finned fish tree of life
errMETHODS IN ECOLOGY AND EVOLUTION
IF6.2
err2019-04-22
err104
errOAAI
errChang, Jonathan; Rabosky, Daniel L.; Smith, Stephen A.; Alfaro, Michael E.
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errSave
Lack of Signal for the Impact of Conotoxin Gene Diversity on Speciation Rates in Cone Snails
errSYSTEMATIC BIOLOGY
IF5.7
err2019-02-28
err16
errOAAI
errPhuong, Mark A.; Alfaro, Michael E.; Mahardika, Gusti N.; Marwoto, Ristiyanti M.; Prabowo, Romanus Edy; von Rintelen, Thomas; Vogt, Philipp W. H.; Hendricks, Jonathan R.; Puillandre, Nicolas
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errSave
Pleiotropic jaw morphology links the evolution of mechanical modularity and functional feeding convergence in Lake Malawi cichlids
errPROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF3.5
err2019-02-20
err25
errOAAI
errHulsey, C. Darrin; Alfaro, Michael E.; Zheng, Jimmy; Meyer, Axel; Holzman, Roi
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Research Directions

No research directions
Co-authors
Cooperation Journals
A
Axel Meyer
H-index: 118 · Papers: 686
M
Marc A. Suchard
H-index: 104 · Papers: 684
D
David R. Bellwood
H-index: 101 · Papers: 450
P
Philippe Lemey
H-index: 95 · Papers: 618
D
David S. Hibbett
H-index: 87 · Papers: 263
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