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Tatsuhiko Tsunoda

university of tokyo

120H-index
592Paper Count
6.7WCitation Count
Published Papers 201
Publication Date
An ensemble-based model comprising deep learning for predicting peptide-binding residues in proteins
err2025-12-01
err0
PREAI
errChandra, Abel; Dehzangi, Iman; Tsunoda, Tatsuhiko; Sattar, Abdul; Sharma, Alok
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Voltage-Matrix Nanopore Profiling for the Discrimination of Protein Mixtures
err2025-09-24
err0
errOAAI
errRyo Akita; Artem Lysenko; Keith Anthony Boroevich; Tatsuya Yokota; Daiki Kawai; Ryo Iizuka; Tatsuhiko Tsunoda; Sotaro Uemura
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scHDeepInsight: a hierarchical deep learning framework for precise immune cell annotation in single-cell RNA-seq data
err2025-09-01
err0
PREAI
errJia, Shangru; Lysenko, Artem; Boroevich, Keith A.; Sharma, Alok; Tsunoda, Tatsuhiko
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Comprehensive analysis of prognosis markers with molecular features derived from pan-cancer whole-genome sequences
err2025-04-12
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errOAAI
errKato, Mamoru; Nishino, Jo; Nagai, Momoko; Rokutan, Hirofumi; Narushima, Daichi; Ono, Hanako; Hasegawa, Takanori; Imoto, Seiya; Matsui, Shigeyuki; Tsunoda, Tatsuhiko; Shibata, Tatsuhiro
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Genetic landscape in undiagnosed patients with syndromic hearing loss revealed by whole exome sequencing and phenotype similarity search
err2025-01-04
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PREAI
errMutai, Hideki; Miya, Fuyuki; Nara, Kiyomitsu; Yamamoto, Nobuko; Inoue, Satomi; Murakami, Haruka; Namba, Kazunori; Shitara, Hiroshi; Minami, Shujiro; Nakano, Atsuko; Arimoto, Yukiko; Morimoto, Noriko; Kawasaki, Taiji; Wasano, Koichiro; Fujioka, Masato; Uchida, Yasue; Kaga, Kimitaka; Yamazawa, Kazuki; Kikkawa, Yoshiaki; Kosaki, Kenjiro; Tsunoda, Tatsuhiko; Matsunaga, Tatsuo
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Biallelic structural variants in three patients with ERCC8-related Cockayne syndrome and a potential pitfall of copy number variation analysis
err2024-08-26
err1
errOAAI
errWatanabe, Daisuke; Okamoto, Nobuhiko; Kobayashi, Yuichi; Suzuki, Hisato; Kato, Mitsuhiro; Saitoh, Shinji; Kanemura, Yonehiro; Takenouchi, Toshiki; Yamada, Mamiko; Nakato, Daisuke; Sato, Masayuki; Tsunoda, Tatsuhiko; Kosaki, Kenjiro; Miya, Fuyuki
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Biallelic null variants in PNPLA8 cause microcephaly by reducing the number of basal radial glia
errBRAIN
IF11.7
err2024-07-31
err2
errOAAI
errNakamura, Yuji; Shimada, Issei S.; Maroofian, Reza; Falabella, Micol; Zaki, Maha S.; Fujimoto, Masanori; Sato, Emi; Takase, Hiroshi; Aoki, Shiho; Miyauchi, Akihiko; Koshimizu, Eriko; Miyatake, Satoko; Arioka, Yuko; Honda, Mizuki; Higashi, Takayoshi; Miya, Fuyuki; Okubo, Yukimune; Ogawa, Isamu; Scardamaglia, Annarita; Miryounesi, Mohammad; Alijanpour, Sahar; Ahmadabadi, Farzad; Herkenrath, Peter; Dafsari, Hormos Salimi; Velmans, Clara; Al Balwi, Mohammed; Vitobello, Antonio; Denomme-Pichon, Anne-Sophie; Jeanne, Mederic; Civit, Antoine; Abdel-Hamid, Mohamed S.; Naderi, Hamed; Darvish, Hossein; Bakhtiari, Somayeh; Kruer, Michael C.; Carroll, Christopher J.; Karimiani, Ehsan Ghayoor; Khailany, Rozhgar A.; Abdulqadir, Talib Adil; Ozaslan, Mehmet; Bauer, Peter; Zifarelli, Giovanni; Seifi, Tahere; Zamani, Mina; Al Alam, Chadi; Alvi, Javeria Raza; Sultan, Tipu; Efthymiou, Stephanie; Pope, Simon A. S.; Haginoya, Kazuhiro; Matsunaga, Tamihide; Osaka, Hitoshi; Matsumoto, Naomichi; Ozaki, Norio; Ohkawa, Yasuyuki; Oki, Shinya; Tsunoda, Tatsuhiko; Pitceathly, Robert D. S.; Taketomi, Yoshitaka; Houlden, Henry; Murakami, Makoto; Kato, Yoichi; Saitoh, Shinji
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Enhanced analysis of tabular data through Multi-representation DeepInsight
err2024-06-04
err1
errOAAI
errSharma, Alok; Lopez, Yosvany; Jia, Shangru; Lysenko, Artem; Boroevich, Keith A.; Tsunoda, Tatsuhiko
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Time-dependent cell-state selection identifies transiently expressed genes regulating ILC2 activation
err2023-09-06
err1
errOAAI
errTanaka, Yumiko; Yamagishi, Mai; Motomura, Yasutaka; Kamatani, Takashi; Oguchi, Yusuke; Suzuki, Nobutake; Kiniwa, Tsuyoshi; Kabata, Hiroki; Irie, Misato; Tsunoda, Tatsuhiko; Miya, Fuyuki; Goda, Keisuke; Ohara, Osamu; Funatsu, Takashi; Fukunaga, Koichi; Moro, Kazuyo; Uemura, Sotaro; Shirasaki, Yoshitaka
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scDeepInsight: a supervised cell-type identification method for scRNA-seq data with deep learning
err2023-07-31
err15
errOAAI
errJia, Shangru; Lysenko, Artem; Boroevich, Keith A.; Sharma, Alok; Tsunoda, Tatsuhiko
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The early neutrophil-committed progenitors aberrantly differentiate into immunoregulatory monocytes during emergency myelopoiesis
err2023-03-01
err15
errOAAI
errIkeda, Naoki; Kubota, Hiroaki; Suzuki, Risa; Morita, Mitsuki; Yoshimura, Ayana; Osada, Yuya; Kishida, Keigo; Kitamura, Daiki; Iwata, Ayaka; Yotsumoto, Satoshi; Kurotaki, Daisuke; Nishimura, Koutarou; Nishiyama, Akira; Tamura, Tomohiko; Kamatani, Takashi; Tsunoda, Tatsuhiko; Murakawa, Miyako; Asahina, Yasuhiro; Hayashi, Yoshihiro; Harada, Hironori; Harada, Yuka; Yokota, Asumi; Hirai, Hideyo; Seki, Takao; Kuwahara, Makoto; Yamashta, Masakatsu; Shichino, Shigeyuki; Tanaka, Masato; Asano, Kenichi
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DeepInsight-3D architecture for anti-cancer drug response prediction with deep-learning on multi-omics
err2023-02-11
err19
errOAAI
errSharma, Alok; Lysenko, Artem; Boroevich, Keith A.; Tsunoda, Tatsuhiko
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Splicing QTL analysis focusing on coding sequences reveals mechanisms for disease susceptibility loci
err2022-08-24
err17
errOAAI
errYamaguchi, Kensuke; Ishigaki, Kazuyoshi; Suzuki, Akari; Tsuchida, Yumi; Tsuchiya, Haruka; Sumitomo, Shuji; Nagafuchi, Yasuo; Miya, Fuyuki; Tsunoda, Tatsuhiko; Shoda, Hirofumi; Fujio, Keishi; Yamamoto, Kazuhiko; Kochi, Yuta
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Association between high immune activity and worse prognosis in uveal melanoma and low-grade glioma in TCGA transcriptomic data
err2022-05-07
err9
errOAAI
errMatsuo, Hitoshi; Kamatani, Takashi; Hamba, Yu; Boroevich, Keith A.; Tsunoda, Tatsuhiko
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Unique characteristics of tertiary lymphoid structures in kidney clear cell carcinoma: prognostic outcome and comparison with bladder cancer
err2022-03-21
err36
errOAAI
errMasuda, Tsukasa; Tanaka, Nobuyuki; Takamatsu, Kimiharu; Hakozaki, Kyohei; Takahashi, Ryohei; Anno, Tadatsugu; Kufukihara, Ryohei; Shojo, Kazunori; Mikami, Shuji; Shinojima, Toshiaki; Kakimi, Kazuhiro; Tsunoda, Tatsuhiko; Aimono, Eriko; Nishihara, Hiroshi; Mizuno, Ryuichi; Oya, Mototsugu
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Landscape of prognostic signatures and immunogenomics of the AXL/GAS6 axis in renal cell carcinoma
err2021-10-05
err14
errOAAI
errHakozaki, Kyohei; Tanaka, Nobuyuki; Takamatsu, Kimiharu; Takahashi, Ryohei; Yasumizu, Yota; Mikami, Shuji; Shinojima, Toshiaki; Kakimi, Kazuhiro; Kamatani, Takashi; Miya, Fuyuki; Tsunoda, Tatsuhiko; Aimono, Eriko; Nishihara, Hiroshi; Mizuno, Ryuichi; Oya, Mototsugu
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Profiling the inhibitory receptors LAG-3, TIM-3, and TIGIT in renal cell carcinoma reveals malignancy
err2021-09-20
err46
errOAAI
errTakamatsu, Kimiharu; Tanaka, Nobuyuki; Hakozaki, Kyohei; Takahashi, Ryohei; Teranishi, Yu; Murakami, Tetsushi; Kufukihara, Ryohei; Niwa, Naoya; Mikami, Shuji; Shinojima, Toshiaki; Sasaki, Takashi; Sato, Yusuke; Kume, Haruki; Ogawa, Seishi; Kakimi, Kazuhiro; Kamatani, Takashi; Miya, Fuyuki; Tsunoda, Tatsuhiko; Aimono, Eriko; Nishihara, Hiroshi; Sawada, Kazuaki; Imamura, Takeshi; Mizuno, Ryuichi; Oya, Mototsugu
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DeepFeature: feature selection in nonimage data using convolutional neural network
err2021-08-06
err32
errOAAI
errSharma, Alok; Lysenko, Artem; Boroevich, Keith A.; Vans, Edwin; Tsunoda, Tatsuhiko
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