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A. Ercüment Çiçek

ihsan dogramaci bilkent university

28H-index
138Paper Count
1.0WCitation Count
Published Papers 34
Publication Date
A reinforcement learning-based approach for dynamic privacy protection in genomic data sharing beacons
err2025-11-24
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errMasoud Poorghaffar Aghdam; Sobhan Shukueian Tabrizi; Kerem Ayöz; Erman Ayday; Sinem Sav; A. Ercüment Çiçek
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RNAtranslator: Modeling protein-conditional RNA design as sequence-to-sequence natural language translation
err2025-10-01
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PREAI
errShukueian Tabrizi, Sobhan; Barazandeh, Sina; Hashemi Aghdam, Helyasadat; Cicek, A. Ercument
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LYCEUM: learning to call copy number variants on low-coverage ancient genomes
err2025-07-01
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errOAAI
errYilmaz, Mehmet Alper; Ceylan, Ahmet Arda; Kaynar, Gun; Cicek, A. Ercument
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ECOLE: Learning to call copy number variants on whole exome sequencing data
err2024-01-02
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errOAAI
errMandiracioglu, Berk; Ozden, Furkan; Kaynar, Gun; Yilmaz, Mehmet Alper; Alkan, Can; Cicek, A. Ercument
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DeepSide: A Deep Learning Approach for Drug Side Effect Prediction
err2023-01-01
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errOAAI
errUner, Onur Can; Kuru, Halil Ibrahim; Cinbis, R. Gokberk; Tastan, Oznur; Cicek, A. Ercument
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DeepND: Deep multitask learning of gene risk for comorbid neurodevelopmental disorders
err2022-07-01
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errOAAI
errBeyreli, Ilayda; Karakahya, Oguzhan; Cicek, A. Ercument
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Polishing copy number variant calls on exome sequencing data via deep learning
err2022-06-13
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errOAAI
errOzden, Furkan; Alkan, Can; Cicek, A. Ercument
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AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data
err2021-09-01
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errOAAI
errThibodeau, Asa; Eroglu, Alper; McGinnis, Christopher S.; Lawlor, Nathan; Nehar-Belaid, Djamel; Kursawe, Romy; Marches, Radu; Conrad, Daniel N.; Kuchel, George A.; Gartner, Zev J.; Banchereau, Jacques; Stitzel, Michael L.; Cicek, A. Ercument; Ucar, Duygu
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DORMAN: Database of Reconstructed MetAbolic Networks
err2021-07-01
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PREAI
errOzden, Furkan; Siper, Metin Can; Acarsoy, Necmi; Elmas, Tugrulcan; Marty, Bryan; Qi, Xinjian; Cicek, A. Ercument
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Genetic circuits combined with machine learning provides fast responding living sensors
err2021-04-01
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errSaltepe, Behide; Bozkurt, Eray Ulas; Gungen, Murat Alp; Cicek, A. Ercument; Seker, Urartu Ozgur Safak
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Robust inference of kinase activity using functional networks
err2021-02-19
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errOAAI
errYilmaz, Serhan; Ayati, Marzieh; Schlatzer, Daniela; Cicek, A. Ercument; Chance, Mark R.; Koyuturk, Mehmet
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Revisiting the complex architecture of ALS in Turkey: Expanding genotypes, shared phenotypes, molecular networks, and a public variant database
err2020-06-24
err14
errOAAI
errTunca, Ceren; Seker, Tuncay; Akcimen, Fulya; Coskun, Cemre; Bayraktar, Elif; Palvadeau, Robin; Zor, Seyit; Kocoglu, Cemile; Kartal, Ece; Sen, Nesli Ece; Hamzeiy, Hamid; Erimis, Aslihan Ozoguz; Norman, Utku; Karakahya, Oguzhan; Olgun, Gulden; Akgun, Tahsin; Durmus, Hacer; Sahin, Erdi; Cakar, Arman; Gursoy, Esra Baar; Yildiz, Gulsen Babacan; Isak, Baris; Uluc, Kayihan; Hanagasi, Hasmet; Bilgic, Basar; Turgut, Nilda; Aysal, Fikret; Ertas, Mustafa; Boz, Cavit; Kotan, Dilcan; Idrisoglu, Halil; Soysal, Aysun; Adatepe, Nurten Uzun; Akalin, Mehmet Ali; Koc, Filiz; Tan, Ersin; Oflazer, Piraye; Deymeer, Feza; Tastan, Oznur; Cicek, A. Ercument; Kavak, Ersen; Parman, Yesim; Basak, A. Nazli
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Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal Cortex
err2020-04-01
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errOAAI
errWerling, Donna M.; Pochareddy, Sirisha; Choi, Jinmyung; An, Joon-Yong; Sheppard, Brooke; Peng, Minshi; Li, Zhen; Dastmalchi, Claudia; Santpere, Gabriel; Sousa, Andre M. M.; Tebbenkamp, Andrew T. N.; Kaur, Navjot; Gulden, Forrest O.; Breen, Michael S.; Liang, Lindsay; Gilson, Michael C.; Zhao, Xuefang; Dong, Shan; Klei, Lambertus; Cicek, A. Ercument; Buxbaum, Joseph D.; Adle-Biassette, Homa; Thomas, Jean-Leon; Aldinger, Kimberly A.; O'Day, Diana R.; Glass, Ian A.; Zaitlen, Noah A.; Talkowski, Michael E.; Roeder, Kathryn; State, Matthew W.; Devlin, Bernie; Sanders, Stephan J.; Sestan, Nenad
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Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
errCELL
IF42.5
err2020-02-01
err1.3K
errOAAI
errSatterstrom, F. Kyle; Kosmicki, Jack A.; Wang, Jiebiao; Breen, Michael S.; De Rubeis, Silvia; An, Joon-Yong; Peng, Minshi; Collins, Ryan; Grove, Jakob; Klei, Lambertus; Stevens, Christine; Reichert, Jennifer; Mulhern, Maureen S.; Artomov, Mykyta; Gerges, Sherif; Sheppard, Brooke; Xu, Xinyi; Bhaduri, Aparna; Norman, Utku; Brand, Harrison; Schwartz, Grace; Nguyen, Rachel; Guerrero, Elizabeth E.; Dias, Caroline; Betancur, Catalina; Cook, Edwin H.; Gallagher, Louise; Gill, Michael; Sutcliffe, James S.; Thurm, Audrey; Zwick, Michael E.; Borglum, Anders D.; State, Matthew W.; Cicek, A. Ercument; Talkowski, Michael E.; Cutler, David J.; Devlin, Bernie; Sanders, Stephan J.; Roeder, Kathryn; Daly, Mark J.; Buxbaum, Joseph D.; Aleksic, Branko; Anney, Richard; Barbosa, Mafalda; Bishop, Somer; Brusco, Alfredo; Bybjerg-Grauholm, Jonas; Carracedo, Angel; Chan, Marcus C. Y.; Chiocchetti, Andreas G.; Chung, Brian H. Y.; Coon, Hilary; Cuccaro, Michael L.; Curro, Aurora; Dalla Bernardina, Bernardo; Doan, Ryan; Domenici, Enrico; Dong, Shan; Fallerini, Chiara; Fernandez-Prieto, Montserrat; Ferrero, Giovanni Battista; Freitag, Christine M.; Fromer, Menachem; Gargus, J. Jay; Geschwind, Daniel; Giorgio, Elisa; Gonzalez-Penas, Javier; Guter, Stephen; Halpern, Danielle; Hansen-Kiss, Emily; He, Xin; Herman, Gail E.; Hertz-Picciotto, Irva; Hougaard, David M.; Hultman, Christina M.; Ionita-Laza, Iuliana; Jacob, Suma; Jamison, Jesslyn; Jugessur, Astanand; Kaartinen, Miia; Knudsen, Gun Peggy; Kolevzon, Alexander; Kushima, Itaru; Lee, So Lun; Lehtimaki, Terho; Lim, Elaine T.; Lintas, Carla; Lipkin, W. Ian; Lopergolo, Diego; Lopes, Fatima; Ludena, Yunin; Maciel, Patricia; Magnus, Per; Mahjani, Behrang; Maltman, Nell; Manoach, Dara S.; Meiri, Gal; Menashe, Idan; Miller, Judith; Minshew, Nancy; Montenegro, Eduarda M. S.; Moreira, Danielle; Morrow, Eric M.; Mors, Ole; Mortensen, Preben Bo; Mosconi, Matthew; Muglia, Pierandrea; Neale, Benjamin M.; Nordentoft, Merete; Ozaki, Norio; Palotie, Aarno; Parellada, Mara; Passos-Bueno, Maria Rita; Pericak-Vance, Margaret; Persico, Antonio M.; Pessah, Isaac; Puura, Kaija; Reichenberg, Abraham; Renieri, Alessandra; Riberi, Evelise; Robinson, Elise B.; Samocha, Kaitlin E.; Sandin, Sven; Santangelo, Susan L.; Schellenberg, Gerry; Scherer, Stephen W.; Schlitt, Sabine; Schmidt, Rebecca; Schmitt, Lauren; Silva, Isabela M. W.; Singh, Tarjinder; Siper, Paige M.; Smith, Moyra; Soares, Gabriela; Stoltenberg, Camilla; Suren, Pal; Susser, Ezra; Sweeney, John; Szatmari, Peter; Tang, Lara; Tassone, Flora; Teufel, Karoline; Trabetti, Elisabetta; Trelles, Maria del Pilar; Walsh, Christopher A.; Weiss, Lauren A.; Werge, Thomas; Werling, Donna M.; Wigdor, Emilie M.; Wilkinson, Emma; Willsey, A. Jeremy; Yu, Timothy W.; Yu, Mullin Hc; Yuen, Ryan; Zachi, Elaine; Agerbo, Esben; Als, Thomas Damm; Appadurai, Vivek; Baekvad-Hansen, Marie; Belliveau, Rich; Buil, Alfonso; Carey, Caitlin E.; Cerrato, Felecia; Chambert, Kimberly; Churchhouse, Claire; Dalsgaard, Soren; Demontis, Ditte; Dumont, Ashley; Goldstein, Jacqueline; Hansen, Christine S.; Hauberg, Mads Engel; Hollegaard, Mads, V; Howrigan, Daniel P.; Huang, Hailiang; Maller, Julian; Martin, Alicia R.; Martin, Joanna; Mattheisen, Manuel; Moran, Jennifer; Pallesen, Jonatan; Palmer, Duncan S.; Pedersen, Carsten Bocker; Pedersen, Marianne Giortz; Poterba, Timothy; Poulsen, Jesper Buchhave; Ripke, Stephan; Schork, Andrew J.; Thompson, Wesley K.; Turley, Patrick; Walters, Raymond K.
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Metabolomics of Small Intestine Neuroendocrine Tumors and Related Hepatic Metastases
err2019-12-11
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errImperiale, Alessio; Poncet, Gilles; Addeo, Pietro; Ruhland, Elisa; Roche, Colette; Battini, Stephanie; Cicek, A. Ercument; Chenard, Marie Pierrette; Hervieu, Valerie; Goichot, Bernard; Bachellier, Philippe; Walter, Thomas; Namer, Izzie Jacques
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Metabolomic Profile of Aggressive Meningiomas by Using High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance
err2019-11-04
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errBender, Laura; Somme, Francois; Ruhland, Elisa; Cicek, A. Ercument; Bund, Caroline; Namer, Izzie Jacques
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