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Lingyun Song

fudan university

47H-index
122Paper Count
1.8WCitation Count
Published Papers 51
Publication Date
Diagnostic performance of the Sanity 2.0 assay to detect resistance to rifampicin, isoniazid, and fluoroquinolones in tuberculosis
err2025-12-01
err0
PREAI
errFeng, Zhen; Ge, Shijia; Miao, Peiwen; Liu, Mei; Li, Qing; Li, Rong; Song, Lingyun; Zhang, Yilin; Sun, Feng; Chen, Xinchang; Li, Yang; Zhang, Wenhong
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Acquired Resistance during Short-Course Treatment for Rifampicin-Resistant Tuberculosis
err2025-11-04
err0
errOAAI
errXinchang Chen; Cui Cai; Lingyun Song; Yuanbo Lan; Hongying Yu; Yuanyuan Chen; Hengzhong Yi; Qianhong Wu; Yuan Qian; Jichan Shi; Ya Huang; Yungui Zhang; Shun Feng; Mingying Xiao; Jing Wang; Yiming Li; Hua Wang; Zebao He; Haiqing Liu; Yena Zhang; Yong Zhou; Yuqing Wu; Feng Sun; Yilin Zhang; Yang Li; Wenhong Zhang
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Comparative efficacy and safety of high-dose rifamycin regimens for tuberculosis treatment: a Bayesian network meta-analysis
err2025-10-04
err0
errOAAI
errFeng, Zhen; Wu, Hailan; Li, Qian; Zhang, Xiaoqiang; He, Qingfeng; Wang, Hangxing; Yu, Jianping; Ge, Shijia; Song, Lingyun; Zhang, Yilin; Zhou, Xian; Sun, Feng; Zhang, Jing; Li, Yang; Zhang, Wenhong
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Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness
errScience
IF45.8
err2025-09-25
err0
PREAI
errBrian D. Cosgrove; Lexi R. Bounds; Carson Key Taylor; Alan L. Su; Anthony J. Rizzo; Alejandro Barrera; Tongyu Sun; Alexias Safi; Lingyun Song; Thomas Whitlow; Aleksandra Tata; Nahid Iglesias; Yarui Diao; Purushothama Rao Tata; Brenton D. Hoffman; Gregory E. Crawford; Charles A. Gersbach
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A Short, All-oral Regimen for Preextensively Drug-resistant Tuberculosis: A Multicenter Open-label Single-arm Study
err2025-08-01
err0
errOAAI
errLi, Yang; Zhang, Yilin; Song, Lingyun; Cai, Cui; Chen, Yuanyuan; Yi, Hengzhong; Wu, Qianhong; Qian, Yuan; Yu, Hongying; Lan, Yuanbo; Shi, Jichan; Huang, Ya; Zhang, Yungui; Feng, Shun; Xiao, Mingying; Wang, Jing; Li, Yiming; Wang, Hua; He, Zebao; Liu, Haiqing; Zhang, Yena; Zhou, Yong; Wu, Yuqing; Sun, Feng; Zhang, Wenhong
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Prevalence, Progression, and Treatment of Asymptomatic Tuberculosis: A Prospective Cohort Study in Lanxi County, Zhejiang Province, China
err2025-05-12
err0
errOAAI
errGe, Shijia; Liu, Kui; Jiang, Xineng; Feng, Zhen; Chen, Songhua; Feng, Yaling; Jiang, Guoyong; Yu, Zhicheng; Song, Lingyun; Shao, Lingyun; Zhang, Yilin; Sun, Feng; Li, Tao; Li, Yang; Zhang, Wenhong
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Epstein-Barr virus induces germinal center light zone chromatin architecture and promotes survival through enhancer looping at the BCL2A1 locus
errMBIO
IF4.7
err2024-01-16
err2
errOAAI
errDai, Joanne; Sorelle, Elliott D.; Heckenberg, Emma; Song, Lingyun; Cable, Jana M.; Crawford, Gregory E.; Luftig, Micah A.; Engelman, Alan N.
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Optimizing (O) rifapentine-based (RI) regimen and shortening (EN) the treatment of drug-susceptible tuberculosis (T) (ORIENT) using an adaptive seamless design: study protocol of a multicenter randomized controlled trial
err2023-05-08
err3
errOAAI
errFeng, Zhen; Miao, Yan; Peng, Ying; Sun, Feng; Zhang, Yilin; Li, Rong; Ge, Shijia; Chen, Xinchang; Song, Lingyun; Li, Yang; Wang, Xiaomeng; Zhang, Wenhong
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Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data
err2022-05-24
err2
errOAAI
errLuo, Kaixuan; Zhong, Jianling; Safi, Alexias; Hong, Linda K.; Tewari, Alok K.; Song, Lingyun; Reddy, Timothy E.; Ma, Li; Crawford, Gregory E.; Hartemink, Alexander J.
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Enhancer selection dictates gene expression responses in remote organs during tissue regeneration
err2022-05-05
err23
errOAAI
errSun, Fei; Ou, Jianhong; Shoffner, Adam R.; Luan, Yu; Yang, Hongbo; Song, Lingyun; Safi, Alexias; Cao, Jingli; Yue, Feng; Crawford, Gregory E.; Poss, Kenneth D.
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Sex dependent glial-specific changes in the chromatin accessibility landscape in late-onset Alzheimer's disease brains
err2021-08-24
err5
errOAAI
errBarrera, Julio; Song, Lingyun; Gamache, Julia E.; Garrett, Melanie E.; Safi, Alexias; Yun, Young; Premasinghe, Ivana; Sprague, Daniel; Chipman, Danielle; Li, Jeffrey; Fradin, Helene; Soldano, Karen; Gordan, Raluca; Ashley-Koch, Allison E.; Crawford, Gregory E.; Chiba-Falek, Ornit
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Integrated chromatin and transcriptomic profiling of patient-derived colon cancer organoids identifies personalized drug targets to overcome oxaliplatin resistance
err2021-03-01
err14
errOAAI
errTung, Kuei-Ling; Chen, Kai-Yuan; Negrete, Marcos; Chen, Tianyi; Safi, Alexias; Aljamal, Abed Alhalim; Song, Lingyun; Crawford, Gregory E.; Ding, Shengli; Hsu, David S.; Shen, Xiling
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Identification and requirements of enhancers that direct gene expression during zebrafish fin regeneration
err2020-07-30
err40
errOAAI
errThompson, John D.; Ou, Jianhong; Lee, Nutishia; Shin, Kwangdeok; Cigliola, Valentina; Song, Lingyun; Crawford, Gregory E.; Kang, Junsu; Poss, Kenneth D.
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Effects of long term antiprogestine mifepristone (RU486) exposure on sexually dimorphic lncRNA expression and gonadal masculinization in Nile tilapia (Oreochromis niloticus)
err2019-10-01
err21
PREAI
errCai, Jing; Li, Lu; Song, Lingyun; Xie, Lang; Luo, Feng; Sun, Shaohua; Chakraborty, Tapas; Zhou, Linyan; Wang, Deshou
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Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants
err2018-08-23
err22
errOAAI
errLee, Dongwon; Kapoor, Ashish; Safi, Alexias; Song, Lingyun; Halushka, Marc K.; Crawford, Gregory E.; Chakravarti, Aravinda
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Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding
err2018-08-10
err90
errOAAI
errMcDowell, Ian C.; Barrera, Alejandro; D'Ippolito, Anthony M.; Vockley, Christopher M.; Hong, Linda K.; Leichter, Sarah M.; Bartelt, Luke C.; Majoros, William H.; Song, Lingyun; Safi, Alexias; Kocak, D. Dewran; Gersbach, Charles A.; Hartemink, Alexander J.; Crawford, Gregory E.; Engelhardt, Barbara E.; Reddy, Timothy E.
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Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia
err2018-08-07
err113
errOAAI
errBryois, Julien; Garrett, Melanie E.; Song, Lingyun; Safi, Alexias; Giusti-Rodriguez, Paola; Johnson, Graham D.; Shieh, Annie W.; Buil, Alfonso; Fullard, John F.; Roussos, Panos; Sklar, Pamela; Akbarian, Schahram; Haroutunian, Vahram; Stockmeier, Craig A.; Wray, Gregory A.; White, Kevin P.; Liu, Chunyu; Reddy, Timothy E.; Ashley-Koch, Allison; Sullivan, Patrick F.; Crawford, Gregory E.
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Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids
err2018-08-01
err71
errOAAI
errD'lppolito, Anthony M.; McDowell, Ian C.; Barrera, Alejandro; Hong, Linda K.; Leichter, Sarah M.; Bartelt, Luke C.; Vockley, Christopher M.; Majoros, William H.; Safi, Alexias; Song, Lingyun; Gersbach, Charles A.; Crawford, Gregory E.; Reddy, Timothy E.
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