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D

Daifeng Wang

university of wisconsin

34H-index
173Paper Count
1.4WCitation Count
Published Papers 45
Publication Date
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Large-scale, spatially resolved panoramic CRISPR screening in native tissue environments using Perturb-DBiT
errNature Biotechnology
IF41.7
err2026-06-11
err0
errOAAI
errAlev Baysoy; Xiaolong Tian; Paul Renauer; Feifei Zhang; Zhiliang Bai; Hao Shi; Mingyu Yang; Dingyao Zhang; Miao Liu; Haikuo Li; Bo Tao; Archibald Enninful; Yao Lu; Fu Gao; Guangchuan Wang; Wanqiu Zhang; Thao Tran; Nathan Heath Patterson; Jie Sheng; Shuozhen Bao; Chuanpeng Dong; Shan Xin; Binfan Chen; Mei Zhong; Sherri Rankin; Cliff Guy; Yan Wang; Jon P. Connelly; Shondra M. Pruett-Miller; Daifeng Wang; Mina Xu; Mark B. Gerstein; Hongbo Chi; Sidi Chen; Rong Fan
errShare
errSave
Molecular and cellular processes disrupted in the early postnatal Down syndrome prefrontal cortex
errScience
IF45.8
err2026-04-23
err0
PREAI
errRyan D. Risgaard; Kalpana Hanthanan Arachchilage; Sara A. Knaack; Masoumeh Hosseini; Rachel J. Chen; Pubudu Kumarage; Danielle K. Schmidt; Xiang Huang; Jie Sheng; Carlos J. Wang; Elisa Giusti; Shuang Liu; Su-Chun Zhang; Daifeng Wang; Anita Bhattacharyya; Andre M. M. Sousa
errShare
errSave
Cooperative multi-view integration with a scalable and interpretable model explainer
errNature Machine Intelligence
IF23.9
err2025-10-21
err0
PREAI
errJerome J. Choi; Noah Cohen Kalafut; Tim Gruenloh; Corinne D. Engelman; Tianyuan Lu; Daifeng Wang
errShare
errSave
Network-based drug repurposing for psychiatric disorders using single-cell genomics
errCell Genomics
IF9
err2025-09-18
err0
PREAI
errChirag Gupta; Noah Cohen Kalafut; Declan Clarke; Jerome J. Choi; Kalpana Hanthanan Arachchilage; Saniya Khullar; Yan Xia; Xiao Zhou; Cagatay Dursun; Mark Gerstein; Daifeng Wang
errShare
errSave
ARTEMIS integrates autoencoders and Schrödinger Bridges to predict continuous dynamics of gene expression, cell population, and perturbation from time-series single-cell data
errBIOINFORMATICS
IF5.4
err2025-07-01
err2
errOAAI
errAlatkar, Sayali Anil; Wang, Daifeng
errShare
errSave
CoTF-reg reveals cooperative transcription factors in oligodendrocyte gene regulation using single-cell multi-omics
errCOMMUNICATIONS BIOLOGY
IF5.1
err2025-02-05
err0
errOAAI
errChoi, Jerome J.; Svaren, John; Wang, Daifeng
errShare
errSave
Rigor and reproducibility in human brain organoid research: Where we are and where we need to go
errSTEM CELL REPORTS
IF5.1
err2024-06-01
err10
errOAAI
errSandoval, Soraya O.; Cappuccio, Gerarda; Kruth, Karina; Osenberg, Sivan; Khalil, Saleh M.; Mendez-Albelo, Natasha M.; Padmanabhan, Krishnan; Wang, Daifeng; Niciu, Mark J.; Bhattacharyya, Anita; Stein, Jason L.; Sousa, Andre M. M.; Waxman, Elisa A.; Buttermore, Elizabeth D.; Whye, Dosh; Sirois, Carissa L.; Williams, Aislinn; Maletic-Savatic, Mirjana; Zhao, Xinyu
errShare
errSave
Species-specific FMRP regulation of RACK1 is critical for prenatal cortical development
errNEURON
IF15
err2023-12-01
err12
errOAAI
errShen, Minjie; Sirois, Carissa L.; Guo, Yu; Li, Meng; Dong, Qiping; Mendez-Albelo, Natasha M.; Gao, Yu; Khullar, Saniya; Kissel, Lee; Sandoval, Soraya O.; Wolkoff, Natalie E.; Huang, Sabrina X.; Xu, Zhiyan; Bryan, Jonathan E.; Contractor, Amaya M.; Korabelnikov, Tomer; Glass, Ian A.; Doherty, Dan; Levine, Jon E.; Sousa, Andre M. M.; Chang, Qiang; Bhattacharyya, Anita; Wang, Daifeng; Werling, Donna M.; Zhao, Xinyu
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errSave
MANGEM: A web app for multimodal analysis of neuronal gene expression, electrophysiology, and morphology
errPATTERNS
IF7.4
err2023-11-01
err0
errOAAI
errOlson, Robert Hermod; Kalafut, Noah Cohen; Wang, Daifeng
errShare
errSave
CMOT: Cross-Modality Optimal Transport for multimodal inference
errGENOME BIOLOGY
IF9.4
err2023-07-11
err3
errOAAI
errAlatkar, Sayali Anil; Wang, Daifeng
errShare
errSave
Joint variational autoencoders for multimodal imputation and embedding
errNATURE MACHINE INTELLIGENCE
IF23.9
err2023-05-29
err12
errOAAI
errKalafut, Noah Cohen; Huang, Xiang; Wang, Daifeng
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errSave
BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids
errCELL REPORTS METHODS
IF4.5
err2023-02-01
err10
errOAAI
errHe, Chenfeng; Kalafut, Noah Cohen; Sandoval, Soraya O.; Risgaard, Ryan; Sirois, Carissa L.; Yang, Chen; Khullar, Saniya; Suzuki, Marin; Huang, Xiang; Chang, Qiang; Zhao, Xinyu; Sousa, Andre M. M.; Wang, Daifeng
errShare
errSave
Predicting brain-regional gene regulatory networks from multi-omics for Alzheimer's disease phenotypes and Covid-19 severity
errHUMAN MOLECULAR GENETICS
IF3.2
err2023-01-16
err5
errOAAI
errKhullar, Saniya; Wang, Daifeng
errShare
errSave
Computational approaches to address data challenges in intellectual and developmental disabilities research
errJOURNAL OF NEURODEVELOPMENTAL DISORDERS
IF4
err2023-01-12
err0
errOAAI
errWang, Daifeng; Pruett, John R.
errShare
errSave
Altered patterning of trisomy 21 interneuron progenitors
errSTEM CELL REPORTS
IF5.1
err2022-06-01
err17
errOAAI
errGiffin-Rao, Yathindar; Sheng, Jie; Strand, Bennett; Xu, Ke; Huang, Leslie; Medo, Margaret; Risgaard, Kirstin A.; Dantinne, Samuel; Mohan, Sruti; Keshan, Aratrika; Daley, Roger A., Jr.; Levesque, Bradley; Amundson, Lindsey; Reese, Rebecca; Sousa, Andre M. M.; Tao, Yunlong; Wang, Daifeng; Zhang, Su-Chun; Bhattacharyya, Anita
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errSave
Sustained correction of hippocampal neurogenic and cognitive deficits after a brief treatment by Nutlin-3 in a mouse model of fragile X syndrome
errBMC MEDICINE
IF8.3
err2022-05-13
err5
errOAAI
errJavadi, Sahar; Li, Yue; Sheng, Jie; Zhao, Lucy; Fu, Yao; Wang, Daifeng; Zhao, Xinyu
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errSave
Bringing machine learning to research on intellectual and developmental disabilities: taking inspiration from neurological diseases
errJOURNAL OF NEURODEVELOPMENTAL DISORDERS
IF4
err2022-05-02
err21
errOAAI
errGupta, Chirag; Chandrashekar, Pramod; Jin, Ting; He, Chenfeng; Khullar, Saniya; Chang, Qiang; Wang, Daifeng
errShare
errSave
A deep manifold-regularized learning model for improving phenotype prediction from multi-modal data
errNATURE COMPUTATIONAL SCIENCE
IF18.3
err2022-01-31
err21
errOAAI
errNguyen, Nam D.; Huang, Jiawei; Wang, Daifeng
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errSave
Chemically induced senescence in human stem cell-derived neurons promotes phenotypic presentation of neurodegeneration
errAGING CELL
IF7.1
err2021-12-24
err12
errOAAI
errFathi, Ali; Mathivanan, Sakthikumar; Kong, Linghai; Petersen, Andrew J.; Harder, Cole R. K.; Block, Jasper; Miller, Julia Marie; Bhattacharyya, Anita; Wang, Daifeng; Zhang, Su-Chun
errShare
errSave
Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics
errCOMMUNICATIONS BIOLOGY
IF5.1
err2021-11-19
err5
errOAAI
errHuang, Jiawei; Sheng, Jie; Wang, Daifeng
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
M
M Snyder
H-index: 210 · Papers: 3.3K
M
Mark Gerstein
H-index: 191 · Papers: 1.2K
D
Daniel H. Geschwind
H-index: 188 · Papers: 966
Y
Yusuf A. Hannun
H-index: 138 · Papers: 741
G
George M. Weinstock
H-index: 133 · Papers: 622
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