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L

Lloyd M. Smith

department of chemistry

77H-index
504Paper Count
3.1WCitation Count
Published Papers 197
Publication Date
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Interactome screening implicates BAG6 as a suppressor of UBQLN2 misfolding in ALS/FTD
errFrontiers in Molecular Neuroscience
IF3.8
err2026-01-06
err0
errOAAI
errSang Hwa Kim†; Claire E. Boos†; Mark Scalf; Akasha K. Wilkemeyer; Lloyd M. Smith; Randal S. Tibbetts
errShare
errSave
DNA-damage dependent isoform switching modulates RIF1 DNA repair complex assembly and phase separation
errJournal of Biological Chemistry
IF3.9
err2025-10-24
err0
errOAAI
errAdenine Si-Hui Koo; Weiyan Jia; Sang Hwa Kim; Mark Scalf; Claire E. Boos; Yuhong Chen; Demin Wang; Andrew F. Voter; Aditya Bajaj; Lloyd M. Smith; James L. Keck; Christopher J. Bakkenist; Lin Guo; Randal S. Tibbetts
errShare
errSave
A needed nomenclature for nucleosomes
errMolecular Cell
IF16.6
err2025-10-02
err0
PREAI
errMichael-Christopher Keogh; Genevieve Almouzni; Andrew J. Andrews; Karim-Jean Armache; Cheryl H. Arrowsmith; Sung Hee Baek; Mark T. Bedford; Emily Bernstein; Jacques Côté; Yael David; John M. Denu; Beat Fierz; Benjamin A. Garcia; Karen C. Glass; Or Gozani; Kristian Helin; Steven Henikoff; Ole N. Jensen; Steven Z. Josefowicz; Neil L. Kelleher; Tatiana G. Kutateladze; Herbert H. Lindner; Chao Lu; Karolin Luger; Parag Mallick; Catherine A. Musselman; Tom W. Muir; Ljiljana Paša-Tolić; Robert Schneider; Xiaobing Shi; Yang Shi; Simone Sidoli; Lloyd M. Smith; Jessica K. Tyler; Cynthia Wolberger; Jerry L. Workman; Brian D. Strahl; Nicolas L. Young
errShare
errSave
Chemoselective Characterization of New Extracellular Matrix Deposition in Bioengineered Tumor Tissues
errAdvanced Materials
IF26.8
err2025-09-06
err0
errOAAI
errZihan Ling; Burke Niego; Qingyang Li; Dhruv Bhattaram; Vanessa Serna Villa; Michael Hu; Zhuowei Gong; Lloyd M. Smith; Brian L. Frey; Xi Ren
errShare
errSave
Dehydroamino acids and their crosslinks in Alzheimer's disease aggregates
errBRAIN COMMUNICATIONS
IF4.5
err2025-01-16
err0
errOAAI
errMarkovich, Samuel W.; Frey, Brian L.; Scalf, Mark; Shortreed, Michael R.; Smith, Lloyd M.
errShare
errSave
Intact Mass Proteomics Using a Proteoform Atlas
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-12-11
err0
PREAI
errPavek, John G.; Whitworth, Isabella T.; Nakayama, Lisa; Scalf, Mark; Frey, Brian L.; Smith, Lloyd M.
errShare
errSave
Identification of Host Proteins Involved in Hepatitis B Virus Genome Packaging
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-07-30
err0
PREAI
errWhitworth, Isabella T.; Romero, Sofia; Kissi-Twum, Abena; Knoener, Rachel; Scalf, Mark; Sherer, Nathan M.; Smith, Lloyd M.
errShare
errSave
Quantitative proteome-wide O-glycoproteomics analysis with FragPipe
errANALYTICAL AND BIOANALYTICAL CHEMISTRY
IF3.8
err2024-06-15
err5
errOAAI
errPolasky, Daniel A.; Lu, Lei; Yu, Fengchao; Li, Kai; Shortreed, Michael R.; Smith, Lloyd M.; Nesvizhskii, Alexey I.
errShare
errSave
Identifying Conditional Dependence of Proteins Regulating Islet Biology with Machine Learning
errDIABETES
IF7.5
err2024-06-14
err0
PREAI
errEmfinger, Christopher; Freiberger, Elyse; Rabaglia, Mary; Kolic, Jelena; Simonett, Shane; Shortreed, Michael; Clark, Lauren; Stapleton, Donnie; Schueler, Kathryn; Mitok, Kelly; Price, Tara R.; Coon, Joshua J.; Smith, Lloyd; Merrins, Matthew J.; Johnson, James D.; Keller, Mark; Attie, Alan D.
errShare
errSave
Spectral averaging with outlier rejection algorithms to increase identifications in top-down proteomics
errPROTEOMICS
IF3.9
err2024-03-15
err2
errOAAI
errCarr, Austin V.; Bollis, Nicholas E.; Pavek, John G.; Shortreed, Michael R.; Smith, Lloyd M.
errShare
errSave
Defining Distinct RNA-Protein Interactomes of SARS-CoV-2 Genomic and Subgenomic RNAs
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2023-12-03
err4
errOAAI
errWhitworth, Isabella T.; Knoener, Rachel A.; Puray-Chavez, Maritza; Halfmann, Peter; Romero, Sofia; Baddouh, M'bark; Scalf, Mark; Kawaoka, Yoshihiro; Kutluay, Sebla B.; Smith, Lloyd M.; Sherer, Nathan M.
errShare
errSave
Cysteine Counting via Isotopic Chemical Labeling for Intact Mass Proteoform Identifications in Tissue
errANALYTICAL CHEMISTRY
IF6.7
err2023-10-04
err2
errOAAI
errPavek, John G.; Frey, Brian L.; Frost, Dustin C.; Gu, Ting-Jia; Li, Lingjun; Smith, Lloyd M.
errShare
errSave
Elucidating the RNA-Protein Interactomes of Target RNAs in Tissue
errANALYTICAL CHEMISTRY
IF6.7
err2023-04-24
err2
errOAAI
errWhitworth, Isabella T.; Henke, Katherine B.; Yang, Bing; Scalf, Mark; Frey, Brian L.; Jarrard, David F.; Smith, Lloyd M.
errShare
errSave
Axon guidance genes modulate neurotoxicity of ALS-associated UBQLN2
errELIFE
IF0
err2023-04-11
err6
errOAAI
errKim, Sang Hwa; Nichols, Kye D.; Anderson, Eric N.; Liu, Yining; Ramesh, Nandini; Jia, Weiyan; Kuerbis, Connor J.; Scalf, Mark; Smith, Lloyd M.; Pandey, Udai Bhan; Tibbetts, Randal S.; Chin, Jeannie
errShare
errSave
Overview and considerations in bottom-up proteomics
errANALYST
IF3.3
err2023-01-01
err44
errOAAI
errMiller, Rachel M.; Smith, Lloyd M.
errShare
errSave
A Hybrid Spectral Library and Protein Sequence Database Search Strategy for Bottom-Up and Top-Down Proteomic Data Analysis
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2022-10-07
err5
errOAAI
errDai, Yuling; Millikin, Robert J.; Rolfs, Zach; Shortreed, Michael R.; Smith, Lloyd M.
errShare
errSave
Multi-step recognition of potential 5' splice sites by the Saccharomyces cerevisiae U1 snRNP
errELIFE
IF0
err2022-08-12
err6
errOAAI
errHansen, Sarah R.; White, David S.; Scalf, Mark; Correa, Ivan R.; Smith, Lloyd M.; Hoskins, Aaron A.; Staley, Jonathan P.
errShare
errSave
Enhanced protein isoform characterization through long-read proteogenomics
errGENOME BIOLOGY
IF9.4
err2022-03-03
err42
errOAAI
errMiller, Rachel M.; Jordan, Ben T.; Mehlferber, Madison M.; Jeffery, Erin D.; Chatzipantsiou, Christina; Kaur, Simi; Millikin, Robert J.; Dai, Yunxiang; Tiberi, Simone; Castaldi, Peter J.; Shortreed, Michael R.; Luckey, Chance John; Conesa, Ana; Smith, Lloyd M.; Mays, Anne Deslattes; Sheynkman, Gloria M.
errShare
errSave
Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics?
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2022-02-27
err47
errOAAI
errPlubell, Deanna L.; Kall, Lukas; Webb-Robertson, Bobbie-Jo; Bramer, Lisa M.; Ives, Ashley; Kelleher, Neil L.; Smith, Lloyd M.; Montine, Thomas J.; Wu, Christine C.; MacCoss, Michael J.
errShare
errSave
Discovery of Dehydroamino Acid Residues in the Capsid and Matrix Structural Proteins of HIV-1
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2022-02-22
err4
errOAAI
errMiller, Rachel M.; Knoener, Rachel A.; Benner, Bayleigh E.; Frey, Brian L.; Scalf, Mark; Shortreed, Michael R.; Sherer, Nathan M.; Smith, Lloyd M.
errShare
errSave

Research Directions

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Co-authors
Cooperation Journals
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John R. Yates
H-index: 188 · Papers: 1.5K
K
Kun‐Liang Guan
H-index: 168 · Papers: 621
Y
Yoshihiro Kawaoka
H-index: 158 · Papers: 1.9K
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