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Inhibitory specificity from a connectomic census of mouse visual cortex (vol 640, pg 448, 2025) Schneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico Share Save
Perisomatic ultrastructure efficiently classifies cells in mouse cortex Elabbady, Leila; Seshamani, Sharmishtaa; Mu, Shang; Mahalingam, Gayathri; Schneider-Mizell, Casey M.; Bodor, Agnes L.; Bae, J. Alexander; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Dorkenwald, Sven; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Seung, H. Sebastian; Reid, R. Clay; da Costa, Nuno Macarico Share Save
Connectomics of predicted Sst transcriptomic types in mouse visual cortex Gamlin, Clare R.; Schneider-Mizell, Casey M.; Mallory, Matthew; Elabbady, Leila; Gouwens, Nathan; Williams, Grace; Mukora, Alice; Dalley, Rachel; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Joyce, Emily; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Takeno, Marc; Torres, Russel; Yin, Wenjing; Nicovich, Philip R.; Bae, J. Alexander; Castro, Manuel A.; Dorkenwald, Sven; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Berg, Jim; Jarsky, Tim; Lee, Brian; Seung, H. Sebastian; Zeng, Hongkui; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico Share Save
Functional connectomics reveals general wiring rule in mouse visual cortex Ding, Zhuokun; Fahey, Paul G.; Papadopoulos, Stelios; Wang, Eric Y.; Celii, Brendan; Papadopoulos, Christos; Chang, Andersen; Kunin, Alexander B.; Tran, Dat; Fu, Jiakun; Ding, Zhiwei; Patel, Saumil; Ntanavara, Lydia; Froebe, Rachel; Ponder, Kayla; Muhammad, Taliah; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Yatsenko, Dimitri; Froudarakis, Emmanouil; Sinz, Fabian; Josic, Kresimir; Rosenbaum, Robert; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Walker, Edgar Y.; Pitkow, Xaq; Reimer, Jacob Share Save
NEURD offers automated proofreading and feature extraction for connectomics Celii, Brendan; Papadopoulos, Stelios; Ding, Zhuokun; Fahey, Paul G.; Wang, Eric; Papadopoulos, Christos; Kunin, Alexander B.; Patel, Saumil; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Castro, Manuel A.; Cobos, Erick; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Schneider-Mizell, Casey M.; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yu, Szi-chieh; Yin, Wenjing; Xenes, Daniel; Kitchell, Lindsey M.; Rivlin, Patricia K.; Rose, Victoria A.; Bishop, Caitlyn A.; Wester, Brock; Froudarakis, Emmanouil; Walker, Edgar Y.; Sinz, Fabian; Seung, H. Sebastian; Collman, Forrest; da Costa, Nuno Macarico; Reid, R. Clay; Pitkow, Xaq; Tolias, Andreas S.; Reimer, Jacob Share Save
An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex Weis, Marissa A.; Papadopoulos, Stelios; Hansel, Laura; Lueddecke, Timo; Celii, Brendan; Fahey, Paul G.; Wang, Eric Y.; Bae, J. Alexander; Bodor, Agnes L.; Brittain, Derrick; Buchanan, JoAnn; Bumbarger, Daniel J.; Castro, Manuel A.; Collman, Forrest; da Costa, Nuno Macarico; Dorkenwald, Sven; Elabbady, Leila; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kapner, Dan; Kemnitz, Nico; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Reid, R. Clay; Schneider-Mizell, Casey M.; Seung, H. Sebastian; Silversmith, William; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reimer, Jacob; Berens, Philipp; Tolias, Andreas S. Share Save
CAVE: Connectome Annotation Versioning Engine Dorkenwald, Sven; Schneider-Mizell, Casey M.; Brittain, Derrick; Halageri, Akhilesh; Jordan, Chris; Kemnitz, Nico; Castro, Manual A.; Silversmith, William; Maitin-Shephard, Jeremy; Troidl, Jakob; Pfister, Hanspeter; Gillet, Valentin; Xenes, Daniel; Bae, J. Alexander; Bodor, Agnes L.; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Jia, Zhen; Kapner, Daniel; Kinn, Sam; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mahalingam, Gayathri; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Takeno, Marc; Torres, Russel; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Yin, Wenjing; Yu, Szi-chieh; Reid, R. Clay; da Costa, Nuno Macarico; Seung, H. Sebastian Share Save
Inhibitory specificity from a connectomic census of mouse visual cortex Schneider-Mizell, Casey M.; Bodor, Agnes L.; Brittain, Derrick; Buchanan, Joann; Bumbarger, Daniel J.; Elabbady, Leila; Gamlin, Clare; Kapner, Daniel; Kinn, Sam; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Suckow, Shelby; Takeno, Marc; Torres, Russel; Yin, Wenjing; Dorkenwald, Sven; Bae, J. Alexander; Castro, Manuel A.; Halageri, Akhilesh; Jia, Zhen; Jordan, Chris; Kemnitz, Nico; Lee, Kisuk; Li, Kai; Lu, Ran; Macrina, Thomas; Mitchell, Eric; Mondal, Shanka Subhra; Mu, Shang; Nehoran, Barak; Popovych, Sergiy; Silversmith, William; Turner, Nicholas L.; Wong, William; Wu, Jingpeng; Reimer, Jacob; Tolias, Andreas S.; Seung, H. Sebastian; Reid, R. Clay; Collman, Forrest; da Costa, Nuno Macarico Share Save
Oligodendrocyte precursor cells ingest axons in the mouse neocortex Buchanan, JoAnn; Elabbady, Leila; Collman, Forrest; Jorstad, Nikolas L.; Bakken, Trygve E.; Ott, Carolyn; Glatzer, Jenna; Bleckert, Adam A.; Bodor, Agnes L.; Brittain, Derrick; Bumbarger, Daniel J.; Mahalingam, Gayathri; Seshamani, Sharmishtaa; Schneider-Mizell, Casey; Takeno, Marc M.; Torres, Russel; Yin, Wenjing; Hodge, Rebecca D.; Castro, Manuel; Dorkenwald, Sven; Ih, Dodam; Jordan, Chris S.; Kemnitz, Nico; Lee, Kisuk; Lu, Ran; Macrina, Thomas; Mu, Shang; Popovych, Sergiy; Silversmith, William M.; Tartavull, Ignacio; Turner, Nicholas L.; Wilson, Alyssa M.; Wong, William; Wu, Jingpeng; Zlateski, Aleksandar; Zung, Jonathan; Lippincott-Schwartz, Jennifer; Lein, Ed S.; Seung, H. Sebastian; Bergles, Dwight E.; Reid, R. Clay; da Costa, Nuno Macarico Share Save
Binary and analog variation of synapses between cortical pyramidal neurons Dorkenwald, Sven; Turner, Nicholas L.; Macrina, Thomas; Lee, Kisuk; Lu, Ran; Wu, Jingpeng; Bodor, Agnes L.; Bleckert, Adam A.; Brittain, Derrick; Kemnitz, Nico; Silversmith, William M.; Ih, Dodam; Zung, Jonathan; Zlateski, Aleksandar; Tartavull, Ignacio; Yu, Szi-Chieh; Popovych, Sergiy; Wong, William; Castro, Manuel; Jordan, Chris S.; Wilson, Alyssa M.; Froudarakis, Emmanouil; Buchanan, JoAnn; Takeno, Marc M.; Torres, Russel; Mahalingam, Gayathri; Collman, Forrest; Schneider-Mizell, Casey M.; Bumbarger, Daniel J.; Li, Yang; Becker, Lynne; Suckow, Shelby; Reimer, Jacob; Tolias, Andreas S.; Macarico da Costa, Nuno; Reid, R. Clay; Seung, H. Sebastian Share Save
A scalable and modular automated pipeline for stitching of large electron microscopy datasets Mahalingam, Gayathri; Torres, Russel; Kapner, Daniel; Trautman, Eric T.; Fliss, Tim; Seshamani, Shamishtaa; Perlman, Eric; Young, Rob; Kinn, Samuel; Buchanan, JoAnn; Takeno, Marc M.; Yin, Wenjing; Bumbarger, Daniel J.; Gwinn, Ryder P.; Nyhus, Julie; Lein, Ed; Smith, Steven J.; Reid, R. Clay; Khairy, Khaled A.; Saalfeld, Stephan; Collman, Forrest; Macarico da Costa, Nuno Share Save
A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues Glaser, Adam K.; Bishop, Kevin W.; Barner, Lindsey A.; Susaki, Etsuo A.; Kubota, Shimpei I.; Gao, Gan; Serafin, Robert B.; Balaram, Pooja; Turschak, Emily; Nicovich, Philip R.; Lai, Hoyin; Lucas, Luciano A. G.; Yi, Yating; Nichols, Eva K.; Huang, Hongyi; Reder, Nicholas P.; Wilson, Jasmine J.; Sivakumar, Ramya; Shamskhou, Elya; Stoltzfus, Caleb R.; Wei, Xing; Hempton, Andrew K.; Pende, Marko; Murawala, Prayag; Dodt, Hans-Ulrich; Imaizumi, Takato; Shendure, Jay; Beliveau, Brian J.; Gerner, Michael Y.; Xin, Li; Zhao, Hu; True, Lawrence D.; Reid, R. Clay; Chandrashekar, Jayaram; Ueda, Hiroki R.; Svoboda, Karel; Liu, Jonathan T. C. Share Save
Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex Zhuang, Jun; Wang, Yun; Ouellette, Naveen D.; Turschak, Emily E.; Larsen, Rylan S.; Takasaki, Kevin T.; Daigle, Tanya L.; Tasic, Bosiljka; Waters, Jack; Zeng, Hongkui; Reid, R. Clay Share Save
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Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice Huang, Lawrence; Ledochowitsch, Peter; Knoblich, Ulf; Lecoq, Jerome; Murphy, Gabe J.; Reid, R. Clay; de Vries, Saskia E. J.; Koch, Christof; Zeng, Hongkui; Buice, Michael A.; Waters, Jack; Li, Lu Share Save
Survey of spiking in the mouse visual system reveals functional hierarchy Siegle, Joshua H.; Jia, Xiaoxuan; Durand, Severine; Gale, Sam; Bennett, Corbett; Graddis, Nile; Heller, Greggory; Ramirez, Tamina K.; Choi, Hannah; Luviano, Jennifer A.; Groblewski, Peter A.; Ahmed, Ruweida; Arkhipov, Anton; Bernard, Amy; Billeh, Yazan N.; Brown, Dillan; Buice, Michael A.; Cain, Nicolas; Caldejon, Shiella; Casal, Linzy; Cho, Andrew; Chvilicek, Maggie; Cox, Timothy C.; Dai, Kael; Denman, Daniel J.; de Vries, Saskia E. J.; Dietzman, Roald; Esposito, Luke; Farrell, Colin; Feng, David; Galbraith, John; Garrett, Marina; Gelfand, Emily C.; Hancock, Nicole; Harris, Julie A.; Howard, Robert; Hu, Brian; Hytnen, Ross; Iyer, Ramakrishnan; Jessett, Erika; Johnson, Katelyn; Kato, India; Kiggins, Justin; Lambert, Sophie; Lecoq, Jerome; Ledochowitsch, Peter; Lee, Jung Hoon; Leon, Arielle; Li, Yang; Liang, Elizabeth; Long, Fuhui; Mace, Kyla; Melchior, Jose; Millman, Daniel; Mollenkopf, Tyler; Nayan, Chelsea; Ng, Lydia; Ngo, Kiet; Nguyen, Thuyahn; Nicovich, Philip R.; North, Kat; Ocker, Gabriel Koch; Ollerenshaw, Doug; Oliver, Michael; Pachitariu, Marius; Perkins, Jed; Reding, Melissa; Reid, David; Robertson, Miranda; Ronellenfitch, Kara; Seid, Sam; Slaughterbeck, Cliff; Stoecklin, Michelle; Sullivan, David; Sutton, Ben; Swapp, Jackie; Thompson, Carol; Turner, Kristen; Wakeman, Wayne; Whitesell, Jennifer D.; Williams, Derric; Williford, Ali; Young, Rob; Zeng, Hongkui; Naylor, Sarah; Phillips, John W.; Reid, R. Clay; Mihalas, Stefan; Olsen, Shawn R.; Koch, Christof Share Save
A petascale automated imaging pipeline for mapping neuronal circuits with high-throughput transmission electron microscopy Yin, Wenjing; Brittain, Derrick; Borseth, Jay; Scott, Marie E.; Williams, Derric; Perkins, Jedediah; Own, Christopher S.; Murfitt, Matthew; Torres, Russel M.; Kapner, Daniel; Mahalingam, Gayathri; Bleckert, Adam; Castelli, Daniel; Reid, David; Lee, Wei-Chung Allen; Graham, Brett J.; Takeno, Marc; Bumbarger, Daniel J.; Farrell, Colin; Reid, R. Clay; da Costa, Nuno Macarico Share Save
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